- s -

• SafeReleaseThreadId() : anima::NumberedThreadImageToImageFilter< TInputImage, TOutputImage >
• sameModel() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SampleFromDiffusionModels() : anima::PatientToGroupComparisonImageFilter< PixelScalarType > , anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >
• save() : anima::SegPerfResults
• SaveRealignTransformFile() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SaveResultFile() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SaveTransformFile() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• ScanFirst() : anima::Block< Type >
• ScanNext() : anima::Block< Type >
• SegmentationMeasuresImageFilter() : anima::SegmentationMeasuresImageFilter< TLabelImage >
• SegPerfApp() : anima::SegPerfApp
• SegPerfCAnalyzer() : anima::SegPerfCAnalyzer
• SegPerfLabelSetMeasures() : anima::SegPerfLabelSetMeasures
• SegPerfResults() : anima::SegPerfResults
• selectCluster() : anima::SegPerfCAnalyzer
• SeStoppingThreshold() : anima::LTSWTransformAgregator< NDimensions > , anima::MEstTransformAgregator< NDimensions >
• set_active() : anima::Graph< captype, tcaptype, flowtype >
• set_orphan_front() : anima::Graph< captype, tcaptype, flowtype >
• set_orphan_rear() : anima::Graph< captype, tcaptype, flowtype >
• set_rcap() : anima::Graph< captype, tcaptype, flowtype >
• set_trcap() : anima::Graph< captype, tcaptype, flowtype >
• SetAbsoluteCostChange() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetAffineDirection() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension >
• SetAgregator() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetAgregThreshold() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetAlgorithm() : anima::NLOPTOptimizers
• SetAlpha() : anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetAlphas() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput >
• SetAngleMax() : anima::BaseAffineBlockMatcher< TInputImageType >
• SetAngles() : anima::LogRigid3DTransform< TScalarType >
• SetAngleUpperBound() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetAtlasImage1() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage >
• SetAtlasImage2() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage >
• SetAtlasImage3() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage >
• SetAValue() : anima::KummerIntegrand
• SetAverageSignalThreshold() : anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• setAverageSurfaceDist() : anima::SegPerfResults
• SetAxialDiffusivity() : anima::BaseCompartment , anima::NODDICompartment , anima::StaniszCompartment , anima::TensorCompartment
• SetAxialDiffusivityValue() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetB0Image() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetB0Threshold() : anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType > , anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetB0ValueThreshold() : anima::GradientFileReader< GradientType, BValueScalarType >
• SetB1DerivativeFlag() : anima::B1GammaDerivativeDistributionIntegrand
• SetB1Map() : anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetB1MaximumOptimizerIterations() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetB1OptimizerInitialStep() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetB1OptimizerStopCondition() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetB1Tolerance() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetB1Value() : anima::T2EPGRelaxometryCostFunction
• SetBackwardImage() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetBasisParameters() : anima::ODFMaximaCostFunction
• SetBCHCompositionOrder() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetBetaParameter() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansPatchSearcher< ImageType, DataImageType > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >
• SetBigDelta() : anima::ApproximateMCMSmoothingCostFunction , anima::BaseMCMCost , anima::GradientFileReader< GradientType, BValueScalarType > , anima::MCMBlockMatcher< TInputImageType > , anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >
• SetBlockGenerationMask() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetBlockIndex() : anima::ImageDataSplitter< TInputImage >
• SetBlockMargin() : anima::ImageDataSplitter< TInputImage >
• SetBlockMatcher() : anima::BaseBMRegistrationMethod< TInputImageType >
• SetBlockPercentageKept() : anima::BaseBlockMatcher< TInputImageType >
• SetBlockPositions() : anima::BaseBlockMatcher< TInputImageType >
• SetBlockRegions() : anima::BaseBlockMatcher< TInputImageType >
• SetBlockSize() : anima::BaseBlockMatcher< TInputImageType > , anima::BlockMatchingInitializer< PixelType, NDimensions > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetBlockSpacing() : anima::BaseBlockMatcher< TInputImageType > , anima::BlockMatchingInitializer< PixelType, NDimensions > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetBlockTransformType() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType >
• SetBlockVarianceThreshold() : anima::BaseBlockMatcher< TInputImageType >
• SetBlockWeights() : anima::BaseBlockMatcher< TInputImageType >
• SetBValue() : anima::KummerIntegrand
• SetBValueBaseString() : anima::GradientFileReader< GradientType, BValueScalarType >
• SetBValueShellSelected() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetBValuesList() : anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType > , anima::DWISimulatorFromDTIImageFilter< PixelScalarType > , anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetBValueWeightIndexes() : anima::ApproximateMCMSmoothingCostFunction
• SetBYCorrection() : anima::FDRCorrectImageFilter< PixelScalarType >
• SetCatchGetValueException() : anima::BobyqaOptimizer
• SetClusterDistance() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetCMeansAverageType() : anima::SpectralClusteringFilter< ScalarType >
• SetCommonConcentrationParameters() : anima::MultiCompartmentModel
• SetCommonDiffusivityParameters() : anima::MultiCompartmentModel
• SetCommonExtraAxonalFractionParameters() : anima::MultiCompartmentModel
• SetCompartmentType() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetCompartmentVector() : anima::BaseCompartment , anima::BaseIsotropicCompartment , anima::NODDICompartment , anima::StaniszCompartment , anima::StickCompartment , anima::TensorCompartment , anima::ZeppelinCompartment
• SetCompartmentWeights() : anima::MultiCompartmentModel
• SetComputationMask() : anima::ImageDataSplitter< TInputImage > , anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge , anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge , anima::MaskedImageToImageFilter< TInputImage, TOutputImage >
• SetComputationRegion() : anima::NumberedThreadImageToImageFilter< TInputImage, TOutputImage >
• SetComputeDeterminant() : anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >
• SetComputeLocalColors() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetConstrainedParameters() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType >
• setContourMeanDist() : anima::SegPerfResults
• SetConvergenceThreshold() : anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions >
• SetCostFunctionTolerance() : anima::BaseRootFindingAlgorithm
• SetCostTolerance() : anima::BoundedLevenbergMarquardtOptimizer
• SetCurrentCost() : anima::BobyqaOptimizer , anima::NLOPTOptimizers
• SetCurrentLinearTransform() : anima::BaseTransformAgregator< NDimensions >
• SetCurrentTransform() : anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >
• SetCurvatureScale() : anima::ODFProbabilisticTractographyImageFilter
• SetCutMask() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetDatabaseCovarianceDistanceAverage() : anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetDatabaseCovarianceDistanceAverageFileName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetDatabaseCovarianceDistanceStd() : anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetDatabaseCovarianceDistanceStdFileName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetDatabaseMeanDistanceAverage() : anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetDatabaseMeanDistanceAverageFileName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetDatabaseMeanDistanceStd() : anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetDatabaseMeanDistanceStdFileName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetDatabaseNames() : anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge , anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetDataLTFileNames() : anima::LowMemoryPatientToGroupComparisonBridge
• SetDataMask() : anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetDataMatrix() : anima::BVLSOptimizer , anima::NNLSOptimizer
• SetDataODFFileNames() : anima::LowMemoryPatientToGroupODFComparisonBridge
• SetDataWeights() : anima::FuzzyCMeansFilter< ScalarType > , anima::SpectralClusteringFilter< ScalarType >
• SetDefaultBackgroundValue() : anima::AnatomicalBlockMatcher< TInputImageType > , anima::FastCorrelationImageToImageMetric< TFixedImage, TMovingImage > , anima::FastMeanSquaresImageToImageMetric< TFixedImage, TMovingImage >
• SetDefaultPixelValue() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetDeltaAganjRegularization() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetDeltaParameter() : anima::BLMLambdaCostFunction
• SetDescriptionModel() : anima::MCMImage< TPixel, VImageDimension >
• setDetectionThresholdAlpha() : anima::SegPerfCAnalyzer
• setDetectionThresholdBeta() : anima::SegPerfCAnalyzer
• setDetectionThresholdGamma() : anima::SegPerfCAnalyzer
• setDice() : anima::SegPerfResults
• SetDimensionGaussian() : anima::RandomInitializer
• SetDirection() : anima::DistortionCorrectionImageFilter< TInputImage > , anima::RecursiveLineYvvGaussianImageFilter< TInputImage, TOutputImage >
• SetDirectionTransform() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetDistanceBoundary() : anima::DenseSVFTransformAgregator< NDimensions > , anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions >
• SetDistributionSamplesT2Correspondences() : anima::B1T2RelaxometryDistributionCostFunction
• SetDMatrix() : anima::CholeskyDecomposition
• SetDValues() : anima::BLMLambdaCostFunction
• SetEchoNumber() : anima::B1GammaDistributionIntegrand , anima::B1GMMDistributionIntegrand
• SetEchoSpacing() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::B1GMMRelaxometryCostFunction , anima::B1T2RelaxometryDistributionCostFunction , anima::EPGSignalSimulator , anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::MultiT2EPGRelaxometryCostFunction , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetElasticSigma() : anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetEM_before_concentration() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetEM_Mode() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetEmIter() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetEmIter_concentration() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetErrorCode() : anima::NLOPTOptimizers
• SetEstimateAxialDiffusivity() : anima::BaseIsotropicCompartment , anima::NODDICompartment , anima::StaniszCompartment , anima::StickCompartment
• SetEstimateDiffusivities() : anima::TensorCompartment , anima::ZeppelinCompartment
• SetEstimateExtraAxonalFraction() : anima::NODDICompartment
• SetEstimateOrientationConcentration() : anima::NODDICompartment
• SetEstimateTissueRadius() : anima::StaniszCompartment
• SetEstimator() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetExcitationFlipAngle() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::B1GMMRelaxometryCostFunction , anima::B1T2RelaxometryDistributionCostFunction , anima::EPGSignalSimulator , anima::MultiT2EPGRelaxometryCostFunction , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetExplainedRatio() : anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge , anima::PatientToGroupComparisonImageFilter< PixelScalarType >
• SetExponentiationOrder() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::SVFExponentialImageFilter< TPixelType, Dimension > , anima::TransformSeriesReader< TScalarType, NDimensions >
• SetExtraAxonalFraction() : anima::BaseCompartment , anima::NODDICompartment
• SetExtrapolationSigma() : anima::BalooExternalExtrapolateImageFilter< TScalarType, NDegreesOfFreedom, NDimensions > , anima::BalooSVFTransformAgregator< NDimensions > , anima::DenseSVFTransformAgregator< NDimensions > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• setF1test() : anima::SegPerfResults
• SetFA() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochSPGRE< TImage >
• SetFastRegistration() : anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetFAThreshold() : anima::DTIProbabilisticTractographyImageFilter
• SetFiberTrashThreshold() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetFieldSmoothingSigma() : anima::DistortionCorrectionImageFilter< TInputImage >
• SetFileName() : anima::MCMFileReader< PixelType, ImageDimension > , anima::MCMFileWriter< PixelType, ImageDimension > , anima::ShapesReader , anima::ShapesWriter
• SetFileNames() : anima::ImageDataSplitter< TInputImage >
• SetFileNameSphereTesselation() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetFilteringMask() : anima::BaseTractographyImageFilter
• SetFilterMask() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetFinalRadius() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetFindOptimalNumberOfCompartments() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetFiniteStrainImageReorientation() : anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetFiniteStrainReorientation() : anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
• SetFirstAngle() : anima::SplitAffine3DTransform< TScalarType >
• SetFirstFieldJacobian() : anima::SVFLieBracketImageFilter< TPixelType, Dimension >
• SetFixedfile() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SetFixedImage() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetFixedImageMask() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetFixedImageRegion() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetFlagSpectralClustering() : anima::FuzzyCMeansFilter< ScalarType >
• SetFlipAngle() : anima::B1GammaDistributionIntegrand , anima::B1GMMDistributionIntegrand , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetFlipAngles() : anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetFlippedAxis() : anima::FlipTensorImageFilter< TPixelType, TImageDimension >
• SetFloatingBackgroundValue() : anima::KissingSymmetricBMRegistrationMethod< TInputImageType >
• SetFloatingImage() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetFloSymmetryTransform() : anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetFluidSigma() : anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions >
• SetForbiddenMask() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetForceApproximation() : anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetForceComputeBlocks() : anima::BaseBlockMatcher< TInputImageType >
• SetForwardImage() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetFreeWaterDiffusivityValue() : anima::MultiCompartmentModelCreator
• SetFTolAbs() : anima::NLOPTOptimizers
• SetFTolerance() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetFTolRel() : anima::NLOPTOptimizers
• SetFunctionValueAtInitialLowerBound() : anima::BaseRootFindingAlgorithm
• SetFunctionValueAtInitialUpperBound() : anima::BaseRootFindingAlgorithm
• SetFuzzyRuleMax() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetFuzzyRuleMin() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetGammaIntegralTolerance() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetGammaMean() : anima::B1GammaDistributionIntegrand
• SetGammaMeans() : anima::B1GammaMixtureT2RelaxometryCostFunction
• SetGammaVariance() : anima::B1GammaDistributionIntegrand
• SetGammaVariances() : anima::B1GammaMixtureT2RelaxometryCostFunction
• SetGaussianIntegralTolerance() : anima::B1GMMRelaxometryCostFunction , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetGaussianMean() : anima::B1GMMDistributionIntegrand
• SetGaussianMeans() : anima::B1GMMRelaxometryCostFunction , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetGaussianModel() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput >
• SetGaussianVariance() : anima::B1GMMDistributionIntegrand
• SetGaussianVariances() : anima::B1GMMRelaxometryCostFunction , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetGeometry() : anima::DirectionScaleSkewTransform< TScalarType > , anima::VoxelExhaustiveOptimizer
• SetGeometryInformation() : anima::BalooSVFTransformAgregator< NDimensions > , anima::DenseSVFTransformAgregator< NDimensions >
• SetGFAThreshold() : anima::ODFProbabilisticTractographyImageFilter
• SetGradientDirections() : anima::ApproximateMCMSmoothingCostFunction , anima::MCMBlockMatcher< TInputImageType > , anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >
• SetGradientFileName() : anima::GradientFileReader< GradientType, BValueScalarType >
• SetGradientIndependentNormalization() : anima::GradientFileReader< GradientType, BValueScalarType >
• SetGradients() : anima::BaseMCMCost
• SetGradientStrengths() : anima::ApproximateMCMSmoothingCostFunction , anima::BaseMCMCost , anima::MCMBlockMatcher< TInputImageType > , anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >
• SetGraph() : anima::NLinksFilter< TInput, TOutput >
• setHausdorffDist() : anima::SegPerfResults
• SetHistogramSize() : anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetIdentity() : anima::AxisRotationTransform< TScalarType > , anima::DirectionScaleSkewTransform< TScalarType > , anima::LogRigid3DTransform< TScalarType > , anima::SplitAffine3DTransform< TScalarType > , anima::SymmetryPlaneTransform< TScalarType >
• SetImageResampler() : anima::PyramidImageFilter< TInputImage, TOutputImage >
• SetIncludeIsotropicWeights() : anima::MCMScalarMapsImageFilter< TPixelType >
• SetInitialAlphas() : anima::GaussianEMEstimator< TInputImage, TMaskImage >
• SetInitialB1Map() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetInitialColinearityDirection() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetInitialDirectionMode() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetInitialGaussianModel() : anima::GaussianEMEstimator< TInputImage, TMaskImage >
• SetInitializer() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetInitialM0Map() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetInitialT2Map() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetInitialTransform() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetInitialTransformField() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetInitMethodType() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInput() : anima::MatrixLoggerFilter< TInputScalarType, TOutputScalarType, NDimensions, NDegreesOfFreedom > , anima::TransformSeriesReader< TScalarType, NDimensions >
• SetInputB1() : anima::SimuBlochSPGRE< TImage > , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetInputClassification() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >
• SetInputCSFAtlas() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputData() : anima::FuzzyCMeansFilter< ScalarType > , anima::KMeansFilter< DataType, PointDimension > , anima::ShapesWriter , anima::SpectralClusteringFilter< ScalarType >
• SetInputGMAtlas() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputImage() : anima::BaseTractographyImageFilter , anima::dtiTractographyImageFilter , anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::MCMFileWriter< PixelType, ImageDimension > , anima::MCMLinearInterpolateImageFunction< TInputImage, TCoordRep > , anima::NonLocalPatchBaseSearcher< ImageType > , anima::RecursiveLineYvvGaussianImageFilter< TInputImage, TOutputImage > , anima::TLinksFilter< TInput, TOutput >
• SetInputImage1() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputImage2() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputImage3() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputImage4() : anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputImage5() : anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputImageDP() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputImageFLAIR() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputImageSeg() : anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetInputImageT1() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputImageT1Gd() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputImageT2() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputLesionPrior() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputM0() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochGRE< TImage > , anima::SimuBlochIRGRE< TImage > , anima::SimuBlochIRSE< TImage > , anima::SimuBlochSE< TImage > , anima::SimuBlochSPGRE< TImage > , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetInputMap() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >
• SetInputMatrix() : anima::CholeskyDecomposition
• SetInputModelImage() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetInputModels() : anima::MCMWeightedAverager
• SetInputOrigins() : anima::BaseTransformAgregator< NDimensions >
• SetInputRegions() : anima::BaseTransformAgregator< NDimensions >
• SetInputSeedProbaSinks() : anima::Graph3DFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputSeedProbaSources() : anima::Graph3DFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetInputSeedSinksMask() : anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetInputSeedSinksProba() : anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetInputSeedSourcesMask() : anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetInputSeedSourcesProba() : anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetInputT1() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochGRE< TImage > , anima::SimuBlochIRGRE< TImage > , anima::SimuBlochIRSE< TImage > , anima::SimuBlochSE< TImage > , anima::SimuBlochSPGRE< TImage > , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetInputT2() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochIRSE< TImage > , anima::SimuBlochSE< TImage > , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetInputT2s() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochGRE< TImage > , anima::SimuBlochIRGRE< TImage > , anima::SimuBlochSPGRE< TImage >
• SetInputTransforms() : anima::BaseTransformAgregator< NDimensions >
• SetInputTransformType() : anima::BaseTransformAgregator< NDimensions >
• SetInputWeight() : anima::BaseTransformAgregator< NDimensions >
• SetInputWeights() : anima::BaseTransformAgregator< NDimensions > , anima::MCMWeightedAverager
• SetInputWMAtlas() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInputWorkMatricesAndVectorsFromQRDerivative() : anima::BLMLambdaCostFunction
• SetIntensityDPFactor() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetIntensityFLAIRFactor() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetIntensityT2Factor() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetInterestZone() : anima::GaussLaguerreQuadrature
• SetInternalCost() : anima::GaussianMCMVariableProjectionMultipleValuedCostFunction , anima::GaussianMCMVariableProjectionSingleValuedCostFunction , anima::MCMMultipleValuedCostFunction , anima::MCMSingleValuedCostFunction
• SetInterpolator() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetInversePivotVector() : anima::BLMLambdaCostFunction
• SetInvertTransform() : anima::TransformSeriesReader< TScalarType, NDimensions >
• SetIRWDiffusivityValue() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• setJaccard() : anima::SegPerfResults
• SetJRank() : anima::BLMLambdaCostFunction
• SetKappaOfPriorDistribution() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetKappaPolynomialCoefficients() : anima::DTIProbabilisticTractographyImageFilter
• SetKappaSplitThreshold() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetL() : anima::SphericalHarmonic
• SetLabeledImage() : anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetLabelToCheck() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >
• SetLambda() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetLastPyramidLevel() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetLesionPriorProportion() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetLesionSegmentationType() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetLikelihood() : anima::GaussianEMEstimator< TInputImage, TMaskImage >
• SetLMatrix() : anima::CholeskyDecomposition
• SetLocalOptimizer() : anima::NLOPTOptimizers
• SetLogFirstSkew() : anima::DirectionScaleSkewTransform< TScalarType >
• SetLogScale() : anima::DirectionScaleSkewTransform< TScalarType > , anima::SplitAffine3DTransform< TScalarType >
• SetLogSecondSkew() : anima::DirectionScaleSkewTransform< TScalarType >
• SetLOrder() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetLowerBound() : anima::BaseRootFindingAlgorithm
• SetLowerBoundGaussianSigma() : anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetLowerBoundParameters() : anima::NLOPTOptimizers
• SetLowerBounds() : anima::BobyqaOptimizer , anima::BoundedLevenbergMarquardtOptimizer , anima::BVLSOptimizer
• SetLowerBoundsPermutted() : anima::BLMLambdaCostFunction
• SetLowerT2Bound() : anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetLowPassGaussianSigma() : anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MultiTensorSmoothingCostFunction
• SetLTSCut() : anima::LTSWTransformAgregator< NDimensions >
• SetM() : anima::SphericalHarmonic
• SetM0UpperBound() : anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetM0UpperBoundValue() : anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetM0Value() : anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2EPGRelaxometryCostFunction
• SetMahalanobisThCSF() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetMahalanobisThGM() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetMahalanobisThWM() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetMAPMergeFibers() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetMarginalEstimation() : anima::GaussianMCMCost
• SetMask() : anima::AtlasInitializer< TInputImage, TMaskImage, TAtlasImage > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput > , anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetMaskImage() : anima::FDRCorrectImageFilter< PixelScalarType >
• SetMatFilename() : anima::Graph3DFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetMatrix() : anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetMatrixGradFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::GraphCutFilter< TInput, TOutput >
• SetMaxAbsDisp() : anima::NonLocalPatchBaseSearcher< ImageType >
• SetMaxEval() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::NLOPTOptimizers
• SetMaxFiberAngle() : anima::BaseTractographyImageFilter
• SetMaximalDisplacementAmplitude() : anima::SVFExponentialImageFilter< TPixelType, Dimension >
• SetMaximize() : anima::BobyqaOptimizer , anima::NLOPTOptimizers , anima::VoxelExhaustiveOptimizer
• SetMaximumIteration() : anima::BobyqaOptimizer
• SetMaximumIterations() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetMaximumNumberOfIterations() : anima::BaseRootFindingAlgorithm
• SetMaximumOptimizerIterations() : anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetMaxIterations() : anima::FuzzyCMeansFilter< ScalarType > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::KMeansFilter< DataType, PointDimension > , anima::SpectralClusteringFilter< ScalarType >
• SetMaxIterationsConc() : anima::GaussianREMEstimator< TInputImage, TMaskImage >
• SetMaxLengthFiber() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetMaxNumIterations() : anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions >
• SetMaxTime() : anima::NLOPTOptimizers
• SetMaxValues() : anima::RandomInitializer
• SetMCMStructure() : anima::BaseMCMCost
• SetMeanImage() : anima::NonLocalMeansPatchSearcher< ImageType, DataImageType >
• SetMeanMinThreshold() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansPatchSearcher< ImageType, DataImageType > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >
• SetMeanThreshold() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >
• SetMEstimateConvergenceThreshold() : anima::DenseSVFTransformAgregator< NDimensions > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetMEstimateFactor() : anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions > , anima::MEstTransformAgregator< NDimensions >
• SetMetric() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetMetricOrientation() : anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetMetricWorstPossibleValue() : anima::BobyqaOptimizer
• SetMinDistance() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetMinimalDiffusionProbability() : anima::ODFProbabilisticTractographyImageFilter
• SetMinimalNumberOfParticlesPerClass() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetMinimalTransformError() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetMinLengthFiber() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetMinLesionsSize() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• setMinLesionVolumeDetection() : anima::SegPerfCAnalyzer
• SetMinValues() : anima::RandomInitializer
• SetMLEstimationStrategy() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetModelDimension() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetModelMinDistance() : anima::GaussianEMEstimator< TInputImage, TMaskImage >
• SetModelRotation() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetModelRotationType() : anima::MCMBlockMatcher< TInputImageType > , anima::TensorBlockMatcher< TInputImageType >
• SetModelVector() : anima::MultiCompartmentModel
• SetModelWithFreeWaterComponent() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetModelWithRestrictedWaterComponent() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetModelWithStaniszComponent() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetModelWithStationaryWaterComponent() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetModified() : anima::GradientFileReader< GradientType, BValueScalarType >
• SetMoseVolume() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetMovingImage() : anima::BaseBlockMatcher< TInputImageType > , anima::BaseBMRegistrationMethod< TInputImageType > , anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetMovingImageMask() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetMovingImageResampler() : anima::BaseBMRegistrationMethod< TInputImageType >
• SetMovingModels() : anima::ApproximateMCMSmoothingCostFunction , anima::MultiTensorSmoothingCostFunction
• SetMultiVarSinks() : anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetMultiVarSources() : anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetMValue() : anima::FuzzyCMeansFilter< ScalarType > , anima::SpectralClusteringFilter< ScalarType >
• SetMyelinThreshold() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetNbClass() : anima::FuzzyCMeansFilter< ScalarType > , anima::SpectralClusteringFilter< ScalarType >
• SetNbGaussian() : anima::RandomInitializer
• SetNbModalities() : anima::NLinksFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetNbSplits() : anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge , anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge
• setNbThreads() : anima::SegPerfCAnalyzer
• SetNegativeWeightBounds() : anima::MultiCompartmentModel
• SetNeighborhoodApproximation() : anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetNeighborhoodHalfSize() : anima::DenseSVFTransformAgregator< NDimensions >
• SetNLEstimation() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetNoContour() : anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetNoIdentity() : anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >
• SetNoiseCovariance() : anima::NonLocalMeansPatchSearcher< ImageType, DataImageType >
• SetNoiseCovariances() : anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >
• SetNoiseImage() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetNoiseSigma() : anima::NoiseGeneratorImageFilter< ImageType >
• SetNoiseType() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetNormalize() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetNormalizeAcrossScale() : anima::RecursiveLineYvvGaussianImageFilter< TInputImage, TOutputImage > , anima::SmoothingRecursiveYvvGaussianImageFilter< TInputImage, TOutputImage >
• setNPV() : anima::SegPerfResults
• SetNumberOfBlocks() : anima::ImageDataSplitter< TInputImage >
• SetNumberOfClasses() : anima::KMeansFilter< DataType, PointDimension >
• SetNumberOfCoils() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetNumberOfCompartments() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetNumberOfEchoes() : anima::EPGSignalSimulator , anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• SetNumberOfEstimators() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetNumberOfFibersPerPixel() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetNumberOfIterations() : anima::BoundedLevenbergMarquardtOptimizer , anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetNumberOfLevels() : anima::PyramidImageFilter< TInputImage, TOutputImage >
• SetNumberOfOutputDirectionalCompartments() : anima::MCMWeightedAverager
• SetNumberOfParticles() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetNumberOfPointsToProcess() : anima::NumberedThreadImageToImageFilter< TInputImage, TOutputImage >
• SetNumberOfPyramidLevels() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetNumberOfReplicates() : anima::NoiseGeneratorImageFilter< ImageType >
• SetNumberOfSteps() : anima::VoxelExhaustiveOptimizer
• SetNumberOfT2Compartments() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetNumberOfThreads() : anima::BlockMatchingInitializer< PixelType, NDimensions >
• SetNumberOfWorkUnits() : anima::BalooSVFTransformAgregator< NDimensions > , anima::BaseBlockMatcher< TInputImageType > , anima::DenseSVFTransformAgregator< NDimensions > , anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge , anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge , anima::MatrixLoggerFilter< TInputScalarType, TOutputScalarType, NDimensions, NDegreesOfFreedom > , anima::SmoothingRecursiveYvvGaussianImageFilter< TInputImage, TOutputImage > , anima::TransformSeriesReader< TScalarType, NDimensions >
• SetNumberSamplingPoints() : anima::BobyqaOptimizer
• SetNumEigenValuesPCA() : anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge , anima::PatientToGroupComparisonImageFilter< PixelScalarType >
• SetObservedSignals() : anima::BaseMCMCost
• SetODFSHOrder() : anima::ODFMaximaCostFunction , anima::ODFProbabilisticTractographyImageFilter
• SetOneToOneMapping() : anima::MCMPairingMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetOptimizer() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetOptimizerInitialStep() : anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetOptimizerMaximumIterations() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetOptimizerMaxIterations() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SetOptimizerStopCondition() : anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetOptimizerType() : anima::BaseBlockMatcher< TInputImageType >
• SetOptimizeWeights() : anima::MultiCompartmentModel
• SetOrientationConcentration() : anima::BaseCompartment , anima::NODDICompartment
• SetOrientationPenalty() : anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetOrientationPhi() : anima::BaseCompartment , anima::NODDICompartment , anima::TensorCompartment
• SetOrientationTheta() : anima::BaseCompartment , anima::NODDICompartment , anima::TensorCompartment
• SetOrientedModelVarianceThreshold() : anima::BlockMatchingInitializer< PixelType, NDimensions >
• SetOrthogonalDirectionMatrix() : anima::BaseTransformAgregator< NDimensions >
• SetOutlierRejectionSigma() : anima::BalooSVFTransformAgregator< NDimensions > , anima::DenseSVFTransformAgregator< NDimensions >
• SetOutlierSigma() : anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetOutput() : anima::BaseTransformAgregator< NDimensions >
• SetOutputCSFFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputDirection() : anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetOutputFilename() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::ImageClassifierFilter< TInput, TMask, TOutput >
• SetOutputFuzzyObjectFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputGCFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputGMFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputIntensityImage1Filename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputIntensityImage2Filename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputLargestPossibleRegion() : anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
• SetOutputLesionFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMahaCSFFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMahaGMFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMahaMaximumFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMahaMinimumFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMahaWMFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputMeanName() : anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge
• SetOutputModel() : anima::MCMWeightedAverager
• SetOutputName() : anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge
• SetOutputNearestRigidTransformFile() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetOutputNearestSimilarityTransformFile() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetOutputNonTouchingBorderFilename() : anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetOutputNPatchesName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetOutputOrigin() : anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetOutputParametersFromImage() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetOutputPValName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge
• SetOutputRealignTransformFile() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SetOutputScoreName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetOutputSpacing() : anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetOutputStartIndex() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetOutputStdName() : anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge
• SetOutputStremCSFFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputStremFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputStremGMFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputStremWMFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputTouchingBorderFilename() : anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput >
• SetOutputTransform() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetOutputTransformFile() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetOutputTransformType() : anima::BaseTransformAgregator< NDimensions > , anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetOutputWholeFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetOutputWMFilename() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetParameters() : anima::AxisRotationTransform< TScalarType > , anima::DirectionScaleSkewTransform< TScalarType > , anima::DirectionScaleTransform< TScalarType > , anima::DirectionTransform< TScalarType > , anima::LogRigid3DTransform< TScalarType > , anima::SplitAffine3DTransform< TScalarType > , anima::SymmetryPlaneTransform< TScalarType >
• SetParameterScale() : anima::ApproximateMCMSmoothingCostFunction
• SetParametersFromVector() : anima::BaseCompartment , anima::BaseIsotropicCompartment , anima::MultiCompartmentModel , anima::NODDICompartment , anima::StaniszCompartment , anima::StickCompartment , anima::TensorCompartment , anima::ZeppelinCompartment
• SetPatchHalfSize() : anima::LocalPatchCovarianceDistanceImageFilter< PixelScalarType > , anima::LocalPatchMeanDistanceImageFilter< PixelScalarType > , anima::LowMemoryLocalPatchCovarianceDistanceBridge , anima::LowMemoryLocalPatchMeanDistanceBridge , anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalPatchBaseSearcher< ImageType >
• SetPercentageKept() : anima::BlockMatchingInitializer< PixelType, NDimensions > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetPerpendicularAngle() : anima::BaseCompartment , anima::TensorCompartment
• SetPivotVector() : anima::BLMLambdaCostFunction
• SetPoints() : anima::BVLSOptimizer , anima::NNLSOptimizer
• SetPopulationSize() : anima::NLOPTOptimizers
• SetPositionDistanceFuseThreshold() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• setPPV() : anima::SegPerfResults
• setPPVL() : anima::SegPerfResults
• SetPreviousParametersPermutted() : anima::BLMLambdaCostFunction
• SetProgressCallback() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SetPunctureWeight() : anima::dtiTractographyImageFilter
• SetQValue() : anima::FDRCorrectImageFilter< PixelScalarType >
• SetRadialDiffusivity1() : anima::BaseCompartment , anima::TensorCompartment , anima::ZeppelinCompartment
• SetRadialDiffusivity1Value() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetRadialDiffusivity2() : anima::BaseCompartment , anima::TensorCompartment
• SetRadialDiffusivity2Value() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetRadius() : anima::MeanAndVarianceImagesFilter< TInputImage, TOutputImage >
• SetRatio() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >
• SetRatioContourWM() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetReferenceB0Image() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetReferenceBackgroundValue() : anima::KissingSymmetricBMRegistrationMethod< TInputImageType >
• SetReferenceImage() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetReferenceImageResampler() : anima::BaseBMRegistrationMethod< TInputImageType >
• SetReferenceModels() : anima::ApproximateMCMSmoothingCostFunction , anima::MultiTensorSmoothingCostFunction
• SetReferenceOutputModel() : anima::MCMAverageImagesImageFilter< TPixelType > , anima::MCMLinearInterpolateImageFunction< TInputImage, TCoordRep > , anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >
• SetReferencePlaneNormal() : anima::AxisRotationTransform< TScalarType >
• SetRefSymmetryTransform() : anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetRegularizationIntensity() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetRejectionRatio() : anima::GaussianREMEstimator< TInputImage, TMaskImage >
• SetRejRatio() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetRejRatioHierar() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetRelaxometrySignals() : anima::T1SERelaxometryCostFunction
• SetRelStopCriterion() : anima::FuzzyCMeansFilter< ScalarType > , anima::SpectralClusteringFilter< ScalarType >
• SetRemoveBorder() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetRequestedRegion() : anima::BlockMatchingInitializer< PixelType, NDimensions >
• SetResamplingThreshold() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• SetResultFile() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetReverseBlockMatcher() : anima::SymmetricBMRegistrationMethod< TInputImageType >
• SetRhoBegin() : anima::BobyqaOptimizer
• SetRhoEnd() : anima::BobyqaOptimizer
• SetRobust() : anima::HierarchicalInitializer< TInputImage, TMaskImage >
• SetRootFindingFunction() : anima::BaseRootFindingAlgorithm , anima::RootFindingFunctionBoostBridge
• SetRootRelativeTolerance() : anima::BaseRootFindingAlgorithm , anima::RootToleranceBoostBridge
• SetRotationCenter() : anima::SymmetryPlaneTransform< TScalarType >
• setRVE() : anima::SegPerfResults
• SetS0Image() : anima::DWISimulatorFromDTIImageFilter< PixelScalarType >
• SetS0Value() : anima::DWISimulatorFromDTIImageFilter< PixelScalarType >
• SetSampleDirections() : anima::LowMemoryPatientToGroupODFComparisonBridge , anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >
• SetScalarVarianceThreshold() : anima::BlockMatchingInitializer< PixelType, NDimensions >
• SetScaleIntensities() : anima::FastCorrelationImageToImageMetric< TFixedImage, TMovingImage > , anima::FastMeanSquaresImageToImageMetric< TFixedImage, TMovingImage >
• SetScaleIntensitiesWithJacobian() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetScaleMax() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType >
• SetScaleNonDiagonal() : anima::ExpTensorImageFilter< TScalarType, NDimensions > , anima::LogTensorImageFilter< TScalarType, NDimensions >
• SetScaleUpperBound() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• setScreen() : anima::SegPerfResults
• SetSearchAngleRadius() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetSearchNeighborhood() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansTemporalImageFilter< TInputImage >
• SetSearchRadius() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetSearchScaleRadius() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetSearchSkewRadius() : anima::DistortionCorrectionBlockMatcher< TInputImageType > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetSearchStepSize() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalPatchBaseSearcher< ImageType >
• SetSecondAngle() : anima::SplitAffine3DTransform< TScalarType >
• SetSecondFieldJacobian() : anima::SVFLieBracketImageFilter< TPixelType, Dimension >
• SetSeedingMask() : anima::BaseTractographyImageFilter
• SetSeedMask() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType >
• setSensibility() : anima::SegPerfResults
• setSensL() : anima::SegPerfResults
• SetSeStoppingThreshold() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetSharpen() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetSharpnessRatio() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetSigma() : anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput > , anima::RecursiveLineYvvGaussianImageFilter< TInputImage, TOutputImage > , anima::SmoothingRecursiveYvvGaussianImageFilter< TInputImage, TOutputImage >
• SetSigmaArray() : anima::SmoothingRecursiveYvvGaussianImageFilter< TInputImage, TOutputImage >
• SetSigmaWeighting() : anima::SpectralClusteringFilter< ScalarType >
• SetSimilarityType() : anima::AnatomicalBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType > , anima::MCMBlockMatcher< TInputImageType > , anima::TensorBlockMatcher< TInputImageType >
• SetSinksMask() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetSize() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetSkewMax() : anima::DistortionCorrectionBlockMatcher< TInputImageType >
• SetSkewUpperBound() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetSmallDelta() : anima::ApproximateMCMSmoothingCostFunction , anima::BaseMCMCost , anima::GradientFileReader< GradientType, BValueScalarType > , anima::MCMBlockMatcher< TInputImageType > , anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MCML2DistanceComputer , anima::MCMMeanSquaresImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >
• SetSolutionReadFilename() : anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetSolutionWriteFilename() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetSourceImage() : anima::SegmentationMeasuresImageFilter< TLabelImage >
• SetSourcesMask() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetSpaceDimension() : anima::BobyqaOptimizer
• SetSpecificAveragerParameters() : anima::MCMLinearInterpolateImageFunction< TInputImage, TCoordRep >
• setSpecificity() : anima::SegPerfResults
• SetSphereWeights() : anima::ApproximateMCMSmoothingCostFunction
• SetSphericalAverageType() : anima::FuzzyCMeansFilter< ScalarType >
• SetSquaredCorrelation() : anima::FastCorrelationImageToImageMetric< TFixedImage, TMovingImage >
• SetSquaredDistance() : anima::MCML2DistanceComputer
• SetSquaredProblem() : anima::NNLSOptimizer
• SetStaniszDiffusivityValue() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetStatisticalTestType() : anima::LowMemoryPatientToGroupComparisonBridge , anima::LowMemoryPatientToGroupODFComparisonBridge , anima::PatientToGroupComparisonImageFilter< PixelScalarType >
• SetStDevThreshold() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetStepProgression() : anima::BaseProbabilisticTractographyImageFilter< TInputModelImageType > , anima::BaseTractographyImageFilter
• SetStepSize() : anima::BaseBlockMatcher< TInputImageType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetStopADCThreshold() : anima::dtiTractographyImageFilter
• SetStopFAThreshold() : anima::dtiTractographyImageFilter
• SetStopVal() : anima::NLOPTOptimizers
• SetStrategy() : anima::ClassificationStrategy< TInputImage, TMaskImage >
• SetStremMode() : anima::GaussianREMEstimator< TInputImage, TMaskImage >
• SetSVFElasticRegSigma() : anima::BaseBMRegistrationMethod< TInputImageType >
• SetSymmetryType() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension >
• SetT1Map() : anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT1UpperBound() : anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT1UpperBoundValue() : anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT1Value() : anima::B1GammaDistributionIntegrand , anima::B1GammaMixtureT2RelaxometryCostFunction , anima::B1GMMDistributionIntegrand , anima::B1GMMRelaxometryCostFunction , anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2EPGRelaxometryCostFunction , anima::T2EPGRelaxometryCostFunction , anima::T2RelaxometryCostFunction
• SetT2DistributionSamples() : anima::B1T2RelaxometryDistributionCostFunction
• SetT2EchoSpacing() : anima::T2EPGRelaxometryCostFunction , anima::T2RelaxometryCostFunction
• SetT2ExcitationFlipAngle() : anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::T2EPGRelaxometryCostFunction , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT2FlipAngles() : anima::B1T2RelaxometryDistributionCostFunction , anima::GammaMixtureT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::MultiT2EPGRelaxometryCostFunction , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::T2EPGRelaxometryCostFunction , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT2IntegrationStep() : anima::B1T2RelaxometryDistributionCostFunction
• SetT2RelaxometrySignals() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::B1GMMRelaxometryCostFunction , anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2EPGRelaxometryCostFunction , anima::T2EPGRelaxometryCostFunction , anima::T2RelaxometryCostFunction
• SetT2UpperBound() : anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT2UpperBoundValue() : anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetT2Value() : anima::T2EPGRelaxometryCostFunction , anima::T2RelaxometryCostFunction
• SetT2Values() : anima::MultiT2EPGRelaxometryCostFunction
• SetT2Weights() : anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2EPGRelaxometryCostFunction
• SetT2WorkingValues() : anima::B1T2RelaxometryDistributionCostFunction
• SetTargetImage() : anima::SegmentationMeasuresImageFilter< TLabelImage >
• SetTE() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochGRE< TImage > , anima::SimuBlochIRGRE< TImage > , anima::SimuBlochIRSE< TImage > , anima::SimuBlochSE< TImage > , anima::SimuBlochSPGRE< TImage >
• SetTensorsScale() : anima::MultiTensorSmoothingCostFunction
• SetTestFileName() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge
• SetTestLTFileName() : anima::LowMemoryPatientToGroupComparisonBridge
• SetTestODFFileName() : anima::LowMemoryPatientToGroupODFComparisonBridge
• SetThirdIsFLAIR() : anima::HierarchicalInitializer< TInputImage, TMaskImage >
• SetThresholdForProlateTensor() : anima::DTIProbabilisticTractographyImageFilter
• SetThresoldWMmap() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetTI() : anima::SimuBlochIRGRE< TImage > , anima::SimuBlochIRSE< TImage >
• SetTissueRadius() : anima::BaseCompartment , anima::StaniszCompartment
• SetTLinkMode() : anima::GraphCutFilter< TInput, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetTol() : anima::CheckStructureNeighborFilter< TInput, TMask, TOutput > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::HierarchicalInitializer< TInputImage, TMaskImage > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::NLinksFilter< TInput, TOutput > , anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput > , anima::TLinksFilter< TInput, TOutput >
• SetTolerance() : anima::NLOPTParametersConstraintFunction
• SetTR() : anima::SimuBlochCoherentGRE< TImage > , anima::SimuBlochGRE< TImage > , anima::SimuBlochIRGRE< TImage > , anima::SimuBlochIRSE< TImage > , anima::SimuBlochSE< TImage > , anima::SimuBlochSPGRE< TImage >
• SetTranlateUpperBound() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetTransform() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage > , anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetTransformDirection() : anima::DistortionCorrectionBlockMatcher< TInputImageType > , anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetTransformInitializationType() : anima::PyramidalBlockMatchingBridge< ImageDimension >
• SetTransformKind() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetTransformParameters() : anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >
• SetTranslateMax() : anima::BaseAffineBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType >
• SetTranslateUpperBound() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetTRValue() : anima::T1RelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2EPGRelaxometryEstimationImageFilter< TInputImage, TOutputImage > , anima::T2RelaxometryCostFunction , anima::T2RelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• SetTRValues() : anima::T1SERelaxometryCostFunction , anima::T1SERelaxometryEstimationImageFilter< TInputImage, TOutputImage >
• setTxt() : anima::SegPerfResults
• SetUniqueDirection() : anima::DirectionScaleSkewTransform< TScalarType >
• SetUniqueFileName() : anima::ImageDataSplitter< TInputImage >
• SetUniqueTranslation() : anima::DirectionScaleSkewTransform< TScalarType >
• SetUp() : anima::RecursiveLineYvvGaussianImageFilter< TInputImage, TOutputImage >
• SetupMetric() : anima::AnatomicalBlockMatcher< TInputImageType > , anima::BaseBlockMatcher< TInputImageType > , anima::DistortionCorrectionBlockMatcher< TInputImageType > , anima::MCMBlockMatcher< TInputImageType > , anima::TensorBlockMatcher< TInputImageType >
• SetupOptimizer() : anima::BaseBlockMatcher< TInputImageType >
• SetUpperBound() : anima::BaseRootFindingAlgorithm
• SetUpperBoundAngle() : anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetUpperBoundDistance() : anima::PyramidalSymmetryBridge< PixelType, ScalarType >
• SetUpperBoundGaussianSigma() : anima::MCMCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetUpperBoundParameters() : anima::NLOPTOptimizers
• SetUpperBounds() : anima::BobyqaOptimizer , anima::BoundedLevenbergMarquardtOptimizer , anima::BVLSOptimizer
• SetUpperBoundsPermutted() : anima::BLMLambdaCostFunction
• SetUpperT2Bound() : anima::B1T2RelaxometryDistributionCostFunction , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >
• SetupPyramids() : anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::PyramidalDenseTensorSVFMatchingBridge< ImageDimension > , anima::PyramidalSymmetryBridge< PixelType, ScalarType > , anima::PyramidalSymmetryConstrainedRegistrationBridge< ScalarType >
• SetUpToDate() : anima::BaseTransformAgregator< NDimensions > , anima::MCMWeightedAverager
• SetupTransform() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >
• SetUseAganjEstimation() : anima::ODFEstimatorImageFilter< TInputPixelType, TOutputPixelType >
• SetUseCommonConcentrations() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseCommonDiffusivities() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseCommonExtraAxonalFractions() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedDiffusivity() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedExtraAxonalFraction() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedFreeWaterDiffusivity() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedIRWDiffusivity() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedOrientationConcentration() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedStaniszDiffusivity() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseConstrainedStaniszRadius() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > , anima::MultiCompartmentModelCreator
• SetUseDP() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetUseFLAIR() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetUseGaussianDistribution() : anima::NoiseGeneratorImageFilter< ImageType >
• SetUseReferenceImage() : anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >
• SetUseRigidTransforms() : anima::MatrixLoggerFilter< TInputScalarType, TOutputScalarType, NDimensions, NDegreesOfFreedom >
• SetUseSpecGrad() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetUseSpectralGradient() : anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::NLinksFilter< TInput, TOutput >
• SetUseT2() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SetValueTolerance() : anima::BoundedLevenbergMarquardtOptimizer
• SetVariableProjectionEstimationMode() : anima::MultiCompartmentModelCreator
• SetVarianceThreshold() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType > , anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >
• SetVarImage() : anima::NonLocalMeansPatchSearcher< ImageType, DataImageType >
• SetVarMinThreshold() : anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansPatchSearcher< ImageType, DataImageType > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >
• SetVectorStorageSize() : anima::NLOPTOptimizers
• SetVerbose() : anima::BaseBlockMatcher< TInputImageType > , anima::CheckStructureNeighborFilter< TInput, TMask, TOutput > , anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput > , anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage > , anima::FuzzyCMeansFilter< ScalarType > , anima::GaussianEMEstimator< TInputImage, TMaskImage > , anima::GcStremMsLesionsSegmentationFilter< TInputImage > , anima::Graph3DFilter< TInput, TOutput > , anima::GraphCutFilter< TInput, TOutput > , anima::ImageClassifierFilter< TInput, TMask, TOutput > , anima::KMeansFilter< DataType, PointDimension > , anima::ModelInitializer , anima::NLinksFilter< TInput, TOutput > , anima::PyramidalBlockMatchingBridge< ImageDimension > , anima::PyramidalDenseSVFMatchingBridge< ImageDimension > , anima::RemoveTouchingBorderFilter< TInput, TMask, TOutput > , anima::SpectralClusteringFilter< ScalarType > , anima::TLinksFilter< TInput, TOutput >
• SetVerboseAgregation() : anima::BaseTransformAgregator< NDimensions >
• SetVerboseLevel() : anima::NLOPTOptimizers
• SetVerboseProgression() : anima::BaseBMRegistrationMethod< TInputImageType >
• SetWeightedAgregation() : anima::PyramidalDistortionCorrectionBlockMatchingBridge< ImageDimension >
• SetWeightImage() : anima::BalooExternalExtrapolateImageFilter< TScalarType, NDegreesOfFreedom, NDimensions > , anima::MEstimateSVFImageFilter< TScalarType, NDegreesOfFreedom, NDimensions >
• SetWeightMethod() : anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansTemporalImageFilter< TInputImage >
• SetWeightThreshold() : anima::LowMemoryNLMeansPatientToGroupComparisonBridge , anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType > , anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType > , anima::NonLocalMeansImageFilter< TInputImage > , anima::NonLocalMeansTemporalImageFilter< TInputImage > , anima::NonLocalPatchBaseSearcher< ImageType >
• setXml() : anima::SegPerfResults
• SetXTolAbs() : anima::NLOPTOptimizers
• SetXTolerance() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SetXTolRel() : anima::NLOPTOptimizers
• SetXValue() : anima::DawsonIntegrand , anima::KummerIntegrand
• ShapesReader() : anima::ShapesReader
• ShapesWriter() : anima::ShapesWriter
• SimuBlochCoherentGRE() : anima::SimuBlochCoherentGRE< TImage >
• SimuBlochGRE() : anima::SimuBlochGRE< TImage >
• SimuBlochIRGRE() : anima::SimuBlochIRGRE< TImage >
• SimuBlochIRSE() : anima::SimuBlochIRSE< TImage >
• SimuBlochSE() : anima::SimuBlochSE< TImage >
• SimuBlochSPGRE() : anima::SimuBlochSPGRE< TImage >
• SmoothingRecursiveYvvGaussianImageFilter() : anima::SmoothingRecursiveYvvGaussianImageFilter< TInputImage, TOutputImage >
• SolveLinearLeastSquares() : anima::B1GammaMixtureT2RelaxometryCostFunction , anima::B1GMMRelaxometryCostFunction , anima::GaussianMCMVariableProjectionCost
• SolveLinearSystem() : anima::CholeskyDecomposition
• SolveLinearSystemInPlace() : anima::CholeskyDecomposition
• SortGaussianModel() : anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >
• SparseInitializeSticks() : anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType >
• SpectralClusteringFilter() : anima::SpectralClusteringFilter< ScalarType >
• SphericalHarmonic() : anima::SphericalHarmonic
• SplitAffine3DTransform() : anima::SplitAffine3DTransform< TScalarType >
• StaniszCompartment() : anima::StaniszCompartment
• StartOptimization() : anima::BaseBMRegistrationMethod< TInputImageType > , anima::BobyqaOptimizer , anima::BoundedLevenbergMarquardtOptimizer , anima::BVLSOptimizer , anima::NLOPTOptimizers , anima::NNLSOptimizer , anima::VoxelExhaustiveOptimizer
• StartWalking() : anima::VoxelExhaustiveOptimizer
• StationaryWaterCompartment() : anima::StationaryWaterCompartment
• StickCompartment() : anima::StickCompartment
• StimulatedSpinEchoImageFilter() : anima::StimulatedSpinEchoImageFilter< TImage, TOutputImage >
• StopOptimization() : anima::BobyqaOptimizer , anima::NLOPTOptimizers
• StopWalking() : anima::VoxelExhaustiveOptimizer
• storeMetricsAndMarks() : anima::SegPerfApp
• StremThreshold() : anima::GcStremMsLesionsSegmentationFilter< TInputImage >
• SVFExponentialImageFilter() : anima::SVFExponentialImageFilter< TPixelType, Dimension >
• SVFLieBracketImageFilter() : anima::SVFLieBracketImageFilter< TPixelType, Dimension >
• SymmetricBMRegistrationMethod() : anima::SymmetricBMRegistrationMethod< TInputImageType >
• SymmetryPlaneTransform() : anima::SymmetryPlaneTransform< TScalarType >