anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension > Class Template Reference

Compute the Jacobian matrix in real coordinates of a displacement field. More...

#include <animaJacobianMatrixImageFilter.h>

Inheritance diagram for anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >:

Collaboration diagram for anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::Image< TOutputPixelType, Dimension >	DeterminantImageType
typedef InputImageType::IndexType	IndexType
typedef InputImageType::Pointer	InputImagePointer
typedef itk::Image< itk::Vector< TPixelType, Dimension >, Dimension >	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef itk::VectorLinearInterpolateNearestNeighborExtrapolateImageFunction< InputImageType >	InterpolatorType
typedef OutputImageType::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::Image< itk::Vector< TOutputPixelType, Dimension *Dimension >, Dimension >	OutputImageType
typedef OutputImageType::PixelType	OutputPixelType
typedef itk::SmartPointer< Self >	Pointer
typedef InputImageType::PointType	PointType
typedef InputImageType::RegionType	RegionType
typedef JacobianMatrixImageFilter	Self
typedef itk::ImageToImageFilter< InputImageType, OutputImageType >	Superclass

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
	itkGetObjectMacro (DeterminantImage, DeterminantImageType) void SetNeighborhood(unsigned int val)
virtual void	SetComputeDeterminant (bool _arg)
virtual void	SetNoIdentity (bool _arg)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	BeforeThreadedGenerateData () ITK_OVERRIDE
bool	CheckFaceConnectivity (const IndexType &internalIndex, const IndexType &currentIndex)
void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
	JacobianMatrixImageFilter ()
virtual	~JacobianMatrixImageFilter ()

Detailed Description

template<typename TPixelType, typename TOutputPixelType, unsigned int Dimension>
class anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >

Compute the Jacobian matrix in real coordinates of a displacement field.

The Jacobian matrix is computed as a linear least squares problem based on multiple directional derivatives around each pixel The output vector in each voxel is of size Dimension^2 and is stored on rows first, i.e. J[0] = dT_0/dx_0, J[1] = dT_0/dx_1, J[2] = dT_0/dx_2, J[3] = dT_1/dx_0, ...

Definition at line 19 of file animaJacobianMatrixImageFilter.h.

Member Typedef Documentation

ConstPointer

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::SmartPointer<const Self> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::ConstPointer

Definition at line 30 of file animaJacobianMatrixImageFilter.h.

DeterminantImageType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::Image<TOutputPixelType, Dimension> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::DeterminantImageType

Definition at line 27 of file animaJacobianMatrixImageFilter.h.

IndexType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InputImageType::IndexType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::IndexType

Definition at line 36 of file animaJacobianMatrixImageFilter.h.

InputImagePointer

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InputImageType::Pointer anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::InputImagePointer

Definition at line 42 of file animaJacobianMatrixImageFilter.h.

InputImageType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::Image<itk::Vector <TPixelType, Dimension>, Dimension> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::InputImageType

Definition at line 25 of file animaJacobianMatrixImageFilter.h.

InputPixelType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InputImageType::PixelType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::InputPixelType

Definition at line 39 of file animaJacobianMatrixImageFilter.h.

InterpolatorPointer

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InterpolatorType::Pointer anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::InterpolatorPointer

Definition at line 48 of file animaJacobianMatrixImageFilter.h.

InterpolatorType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::VectorLinearInterpolateNearestNeighborExtrapolateImageFunction<InputImageType> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::InterpolatorType

Definition at line 47 of file animaJacobianMatrixImageFilter.h.

OutputImagePointer

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef OutputImageType::Pointer anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::OutputImagePointer

Definition at line 43 of file animaJacobianMatrixImageFilter.h.

OutputImageRegionType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef Superclass::OutputImageRegionType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::OutputImageRegionType

Definition at line 45 of file animaJacobianMatrixImageFilter.h.

OutputImageType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::Image<itk::Vector <TOutputPixelType, Dimension * Dimension>, Dimension> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::OutputImageType

Definition at line 26 of file animaJacobianMatrixImageFilter.h.

OutputPixelType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef OutputImageType::PixelType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::OutputPixelType

Definition at line 40 of file animaJacobianMatrixImageFilter.h.

Pointer

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::SmartPointer<Self> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::Pointer

Definition at line 29 of file animaJacobianMatrixImageFilter.h.

PointType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InputImageType::PointType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::PointType

Definition at line 38 of file animaJacobianMatrixImageFilter.h.

RegionType

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef InputImageType::RegionType anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::RegionType

Definition at line 37 of file animaJacobianMatrixImageFilter.h.

Self

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef JacobianMatrixImageFilter anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::Self

Definition at line 24 of file animaJacobianMatrixImageFilter.h.

Superclass

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

typedef itk::ImageToImageFilter<InputImageType, OutputImageType> anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::Superclass

Definition at line 28 of file animaJacobianMatrixImageFilter.h.

Constructor & Destructor Documentation

JacobianMatrixImageFilter()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::JacobianMatrixImageFilter ( )

inlineprotected

Definition at line 57 of file animaJacobianMatrixImageFilter.h.

~JacobianMatrixImageFilter()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

virtual anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::~JacobianMatrixImageFilter ( )

inlineprotectedvirtual

Definition at line 67 of file animaJacobianMatrixImageFilter.h.

References anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::BeforeThreadedGenerateData(), anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::CheckFaceConnectivity(), and anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::DynamicThreadedGenerateData().

Member Function Documentation

BeforeThreadedGenerateData()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

void anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::BeforeThreadedGenerateData ( )

protected

Definition at line 15 of file animaJacobianMatrixImageFilter.hxx.

Referenced by anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::~JacobianMatrixImageFilter().

CheckFaceConnectivity()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

bool anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::CheckFaceConnectivity ( const IndexType &  internalIndex, const IndexType &  currentIndex  )

protected

Definition at line 225 of file animaJacobianMatrixImageFilter.hxx.

Referenced by anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::~JacobianMatrixImageFilter().

CreateAnother()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

virtual::itk::LightObject::Pointer anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::CreateAnother

(

void

)

const

DynamicThreadedGenerateData()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

void anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::DynamicThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread )

protected

Definition at line 56 of file animaJacobianMatrixImageFilter.hxx.

Referenced by anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::~JacobianMatrixImageFilter().

GetNameOfClass()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

virtual const char* anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::GetNameOfClass ( ) const

virtual

itkGetObjectMacro()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::itkGetObjectMacro	(	DeterminantImage	,
		DeterminantImageType
	)

New()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

static Pointer anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::New ( )

static

SetComputeDeterminant()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

virtual void anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::SetComputeDeterminant ( bool  _arg )

virtual

SetNoIdentity()

template<typename TPixelType , typename TOutputPixelType , unsigned int Dimension>

virtual void anima::JacobianMatrixImageFilter< TPixelType, TOutputPixelType, Dimension >::SetNoIdentity ( bool  _arg )

virtual

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The documentation for this class was generated from the following files:

• animaJacobianMatrixImageFilter.h
• animaJacobianMatrixImageFilter.hxx