anima::DistortionCorrectionBMRegistrationMethod< TInputImageType > Class Template Reference

#include <animaDistortionCorrectionBMRegistrationMethod.h>

Inheritance diagram for anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >:

Collaboration diagram for anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >:

Public Types
typedef Superclass::AffineTransformType	AffineTransformType
typedef Superclass::AgregatorScalarType	AgregatorScalarType
typedef Superclass::AgregatorType	AgregatorType
typedef Superclass::BlockMatcherType	BlockMatcherType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::DisplacementFieldTransformPointer	DisplacementFieldTransformPointer
typedef Superclass::DisplacementFieldTransformType	DisplacementFieldTransformType
typedef Superclass::ImageScalarType	ImageScalarType
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageType	InputImageType
typedef itk::SmartPointer< Self >	Pointer
typedef DistortionCorrectionBMRegistrationMethod	Self
typedef BaseBMRegistrationMethod< TInputImageType >	Superclass
typedef Superclass::SVFTransformType	SVFTransformType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from anima::BaseBMRegistrationMethod< TInputImageType >
typedef AffineTransformType::Pointer	AffineTransformPointer
typedef itk::AffineTransform< typename AgregatorType::ScalarType, TInputImageType::ImageDimension >	AffineTransformType
typedef AgregatorType::ScalarType	AgregatorScalarType
typedef anima::BaseTransformAgregator< TInputImageType::ImageDimension >	AgregatorType
typedef AgregatorType::BaseInputTransformType	BaseInputTransformType
typedef AgregatorType::BaseOutputTransformType	BaseOutputTransformType
typedef anima::BaseBlockMatcher< TInputImageType >	BlockMatcherType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::ProcessObject::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef DisplacementFieldTransformType::Pointer	DisplacementFieldTransformPointer
typedef rpi::DisplacementFieldTransform< AgregatorScalarType, TInputImageType::ImageDimension >	DisplacementFieldTransformType
typedef TInputImageType::IOPixelType	ImageScalarType
typedef InputImageType::Pointer	InputImagePointer
typedef TInputImageType	InputImageType
typedef MaskImageType::Pointer	MaskImagePointer
typedef itk::Image< unsigned char, TInputImageType::ImageDimension >	MaskImageType
typedef itk::SmartPointer< Self >	Pointer
typedef ResamplerFilterType::Pointer	ResamplerFilterPointer
typedef itk::ImageToImageFilter< InputImageType, InputImageType >	ResamplerFilterType
typedef BaseBMRegistrationMethod	Self
typedef itk::ProcessObject	Superclass
typedef SVFTransformType::Pointer	SVFTransformPointer
typedef itk::StationaryVelocityFieldTransform< AgregatorScalarType, TInputImageType::ImageDimension >	SVFTransformType
typedef TransformOutputType::Pointer	TransformOutputPointer
typedef itk::DataObjectDecorator< TransformType >	TransformOutputType
typedef TransformType::Pointer	TransformPointer
typedef AgregatorType::BaseOutputTransformType	TransformType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
virtual void	SetCurrentTransform (TransformPointer _arg)
Public Member Functions inherited from anima::BaseBMRegistrationMethod< TInputImageType >
void	Abort ()
virtual AgregatorType *	GetAgregator ()
virtual unsigned int	GetBCHCompositionOrder ()
BlockMatcherType *	GetBlockMatcher ()
virtual unsigned int	GetExponentiationOrder ()
virtual InputImageType *	GetFixedImage ()
TransformPointer &	GetInitialTransform ()
virtual unsigned int	GetMaximumIterations ()
virtual double	GetMinimalTransformError ()
virtual InputImageType *	GetMovingImage ()
ResamplerFilterPointer &	GetMovingImageResampler ()
TransformOutputType *	GetOutput ()
ResamplerFilterPointer &	GetReferenceImageResampler ()
virtual double	GetSVFElasticRegSigma ()
virtual bool	GetVerboseProgression ()
virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType idx) ITK_OVERRIDE
virtual void	SetAgregator (AgregatorType *_arg)
virtual void	SetBCHCompositionOrder (unsigned int _arg)
void	SetBlockMatcher (BlockMatcherType *matcher)
virtual void	SetExponentiationOrder (unsigned int _arg)
virtual void	SetFixedImage (InputImageType *_arg)
virtual void	SetInitialTransform (TransformPointer _arg)
virtual void	SetMaximumIterations (unsigned int _arg)
virtual void	SetMinimalTransformError (double _arg)
virtual void	SetMovingImage (InputImageType *_arg)
void	SetMovingImageResampler (ResamplerFilterType *filter)
void	SetReferenceImageResampler (ResamplerFilterType *filter)
virtual void	SetSVFElasticRegSigma (double _arg)
virtual void	SetVerboseProgression (bool _arg)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
virtual bool	ComposeAddOnWithTransform (TransformPointer &computedTransform, TransformType *addOn) ITK_OVERRIDE
	DistortionCorrectionBMRegistrationMethod ()
virtual void	PerformOneIteration (InputImageType *refImage, InputImageType *movingImage, TransformPointer &addOn) ITK_OVERRIDE
virtual void	ResampleImages (TransformType *currentTransform, InputImagePointer &refImage, InputImagePointer &movingImage) ITK_OVERRIDE
virtual void	SetupTransform (TransformPointer &optimizedTransform) ITK_OVERRIDE
virtual	~DistortionCorrectionBMRegistrationMethod ()
Protected Member Functions inherited from anima::BaseBMRegistrationMethod< TInputImageType >
	BaseBMRegistrationMethod ()
void	GenerateData () ITK_OVERRIDE
virtual void	PrintSelf (std::ostream &os, itk::Indent indent) const ITK_OVERRIDE
void	StartOptimization ()
virtual	~BaseBMRegistrationMethod ()

Detailed Description

template<typename TInputImageType>
class anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >

Definition at line 8 of file animaDistortionCorrectionBMRegistrationMethod.h.

Member Typedef Documentation

AffineTransformType

template<typename TInputImageType >

typedef Superclass::AffineTransformType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::AffineTransformType

Definition at line 25 of file animaDistortionCorrectionBMRegistrationMethod.h.

AgregatorScalarType

template<typename TInputImageType >

typedef Superclass::AgregatorScalarType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::AgregatorScalarType

Definition at line 24 of file animaDistortionCorrectionBMRegistrationMethod.h.

AgregatorType

template<typename TInputImageType >

typedef Superclass::AgregatorType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::AgregatorType

Definition at line 23 of file animaDistortionCorrectionBMRegistrationMethod.h.

BlockMatcherType

template<typename TInputImageType >

typedef Superclass::BlockMatcherType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::BlockMatcherType

Definition at line 22 of file animaDistortionCorrectionBMRegistrationMethod.h.

ConstPointer

template<typename TInputImageType >

typedef itk::SmartPointer<const Self> anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ConstPointer

Definition at line 15 of file animaDistortionCorrectionBMRegistrationMethod.h.

DisplacementFieldTransformPointer

template<typename TInputImageType >

typedef Superclass::DisplacementFieldTransformPointer anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::DisplacementFieldTransformPointer

Definition at line 28 of file animaDistortionCorrectionBMRegistrationMethod.h.

DisplacementFieldTransformType

template<typename TInputImageType >

typedef Superclass::DisplacementFieldTransformType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::DisplacementFieldTransformType

Definition at line 27 of file animaDistortionCorrectionBMRegistrationMethod.h.

ImageScalarType

template<typename TInputImageType >

typedef Superclass::ImageScalarType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ImageScalarType

Definition at line 17 of file animaDistortionCorrectionBMRegistrationMethod.h.

InputImagePointer

template<typename TInputImageType >

typedef Superclass::InputImagePointer anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::InputImagePointer

Definition at line 19 of file animaDistortionCorrectionBMRegistrationMethod.h.

InputImageType

template<typename TInputImageType >

typedef Superclass::InputImageType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::InputImageType

Definition at line 18 of file animaDistortionCorrectionBMRegistrationMethod.h.

Pointer

template<typename TInputImageType >

typedef itk::SmartPointer<Self> anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::Pointer

Definition at line 14 of file animaDistortionCorrectionBMRegistrationMethod.h.

Self

template<typename TInputImageType >

typedef DistortionCorrectionBMRegistrationMethod anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::Self

Standard class typedefs.

Definition at line 12 of file animaDistortionCorrectionBMRegistrationMethod.h.

Superclass

template<typename TInputImageType >

typedef BaseBMRegistrationMethod<TInputImageType> anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::Superclass

Definition at line 13 of file animaDistortionCorrectionBMRegistrationMethod.h.

SVFTransformType

template<typename TInputImageType >

typedef Superclass::SVFTransformType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::SVFTransformType

Definition at line 26 of file animaDistortionCorrectionBMRegistrationMethod.h.

TransformPointer

template<typename TInputImageType >

typedef Superclass::TransformPointer anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::TransformPointer

Definition at line 21 of file animaDistortionCorrectionBMRegistrationMethod.h.

TransformType

template<typename TInputImageType >

typedef Superclass::TransformType anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::TransformType

Definition at line 20 of file animaDistortionCorrectionBMRegistrationMethod.h.

Constructor & Destructor Documentation

DistortionCorrectionBMRegistrationMethod()

template<typename TInputImageType >

anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::DistortionCorrectionBMRegistrationMethod ( )

inlineprotected

Definition at line 38 of file animaDistortionCorrectionBMRegistrationMethod.h.

Referenced by anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod().

~DistortionCorrectionBMRegistrationMethod()

template<typename TInputImageType >

virtual anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod ( )

inlineprotectedvirtual

Definition at line 39 of file animaDistortionCorrectionBMRegistrationMethod.h.

References anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ComposeAddOnWithTransform(), anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::DistortionCorrectionBMRegistrationMethod(), anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::PerformOneIteration(), anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ResampleImages(), and anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::SetupTransform().

Member Function Documentation

ComposeAddOnWithTransform()

template<typename TInputImageType >

bool anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ComposeAddOnWithTransform ( TransformPointer &  computedTransform, TransformType *  addOn  )

protectedvirtual

Reimplemented from anima::BaseBMRegistrationMethod< TInputImageType >.

Definition at line 156 of file animaDistortionCorrectionBMRegistrationMethod.hxx.

References anima::GetSVFExponential().

Referenced by anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod().

CreateAnother()

template<typename TInputImageType >

virtual::itk::LightObject::Pointer anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::CreateAnother

(

void

)

const

GetNameOfClass()

template<typename TInputImageType >

virtual const char* anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from anima::BaseBMRegistrationMethod< TInputImageType >.

New()

template<typename TInputImageType >

static Pointer anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::New ( )

static

PerformOneIteration()

template<typename TInputImageType >

void anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::PerformOneIteration ( InputImageType *  refImage, InputImageType *  movingImage, TransformPointer &  addOn  )

protectedvirtual

Implements anima::BaseBMRegistrationMethod< TInputImageType >.

Definition at line 198 of file animaDistortionCorrectionBMRegistrationMethod.hxx.

References anima::BaseBMRegistrationMethod< TInputImageType >::SetMovingImage().

Referenced by anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod().

ResampleImages()

template<typename TInputImageType >

void anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::ResampleImages ( TransformType *  currentTransform, InputImagePointer &  refImage, InputImagePointer &  movingImage  )

protectedvirtual

Reimplemented from anima::BaseBMRegistrationMethod< TInputImageType >.

Definition at line 36 of file animaDistortionCorrectionBMRegistrationMethod.hxx.

References anima::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::SetTransform().

Referenced by anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod().

SetCurrentTransform()

template<typename TInputImageType >

virtual void anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::SetCurrentTransform ( TransformPointer  _arg )

virtual

SetupTransform()

template<typename TInputImageType >

void anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::SetupTransform ( TransformPointer &  optimizedTransform )

protectedvirtual

Reimplemented from anima::BaseBMRegistrationMethod< TInputImageType >.

Definition at line 21 of file animaDistortionCorrectionBMRegistrationMethod.hxx.

Referenced by anima::DistortionCorrectionBMRegistrationMethod< TInputImageType >::~DistortionCorrectionBMRegistrationMethod().

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The documentation for this class was generated from the following files:

• animaDistortionCorrectionBMRegistrationMethod.h
• animaDistortionCorrectionBMRegistrationMethod.hxx