ANIMA  4.0
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Static Protected Member Functions | List of all members
anima::PyramidalBlockMatchingBridge< ImageDimension > Class Template Reference

#include <animaPyramidalBlockMatchingBridge.h>

+ Inheritance diagram for anima::PyramidalBlockMatchingBridge< ImageDimension >:
+ Collaboration diagram for anima::PyramidalBlockMatchingBridge< ImageDimension >:

Public Types

typedef AffineTransformType::Pointer AffineTransformPointer
 
typedef itk::AffineTransform< typename AgregatorType::ScalarType, ImageDimension > AffineTransformType
 
enum  Agregator {
  MEstimation = 0,
  LeastSquares,
  LeastTrimmedSquares
}
 
typedef anima::BaseTransformAgregator< ImageDimension > AgregatorType
 
typedef BaseBlockMatchRegistrationType::Pointer BaseBlockMatchRegistrationPointer
 
typedef anima::BaseBMRegistrationMethod< InputImageType > BaseBlockMatchRegistrationType
 
typedef BaseTransformType::Pointer BaseTransformPointer
 
typedef AgregatorType::BaseOutputTransformType BaseTransformType
 
typedef itk::SmartPointer< const Self > ConstPointer
 
enum  InitializationType {
  Identity = 0,
  GravityCenters,
  ClosestTransform
}
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::Pointer InputImagePointer
 
typedef itk::Image< double, ImageDimension > InputImageType
 
typedef InputImageType::IOPixelType InputPixelType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef itk::Image< unsigned char, ImageDimension > MaskImageType
 
typedef MaskPyramidType::Pointer MaskPyramidPointer
 
typedef anima::PyramidImageFilter< MaskImageType, MaskImageType > MaskPyramidType
 
enum  Metric {
  SquaredCorrelation = 0,
  Correlation,
  MeanSquares
}
 
enum  Optimizer {
  Exhaustive = 0,
  Bobyqa
}
 
enum  OutputTransform {
  outRigid = 0,
  outTranslation,
  outAffine,
  outAnisotropic_Sim
}
 
typedef itk::SmartPointer< Self > Pointer
 
typedef InputImageType::PointType PointType
 
typedef PyramidType::Pointer PyramidPointer
 
typedef anima::PyramidImageFilter< InputImageType, InputImageType > PyramidType
 
typedef PyramidalBlockMatchingBridge Self
 
typedef itk::ProcessObject Superclass
 
enum  SymmetryType {
  Asymmetric = 0,
  Symmetric,
  Kissing
}
 
enum  Transform {
  Translation = 0,
  Rigid,
  Affine,
  Directional_Affine
}
 

Public Member Functions

void Abort ()
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
unsigned int GetAffineDirection ()
 
Agregator GetAgregator ()
 
double GetAgregThreshold ()
 
double GetAngleUpperBound ()
 
unsigned int GetBlockSize ()
 
unsigned int GetBlockSpacing ()
 
double GetFinalRadius ()
 
unsigned int GetLastPyramidLevel ()
 
unsigned int GetMaximumIterations ()
 
Metric GetMetric ()
 
double GetMinimalTransformError ()
 
virtual const char * GetNameOfClass () const
 
unsigned int GetNumberOfPyramidLevels ()
 
Optimizer GetOptimizer ()
 
unsigned int GetOptimizerMaximumIterations ()
 
InputImagePointer GetOutputImage ()
 
std::string GetOutputNearestRigidTransformFile ()
 
std::string GetOutputNearestSimilarityTransformFile ()
 
BaseTransformPointer GetOutputTransform ()
 
std::string GetOutputTransformFile ()
 
OutputTransform GetOutputTransformType ()
 
double GetPercentageKept ()
 
std::string GetResultFile ()
 
double GetScaleUpperBound ()
 
double GetSearchAngleRadius ()
 
double GetSearchRadius ()
 
double GetSearchScaleRadius ()
 
double GetSeStoppingThreshold ()
 
double GetStDevThreshold ()
 
double GetStepSize ()
 
SymmetryType GetSymmetryType ()
 
Transform GetTransform ()
 
InitializationType GetTransformInitializationType ()
 
double GetTranslateUpperBound ()
 
void SetAffineDirection (unsigned int val)
 
void SetAgregator (Agregator agregator)
 
void SetAgregThreshold (double AgregThreshold)
 
void SetAngleUpperBound (double AngleUpperBound)
 
void SetBlockGenerationMask (MaskImageType *mask)
 
void SetBlockSize (int blockSize)
 
void SetBlockSpacing (unsigned int blockSpacing)
 
void SetDirectionTransform (AffineTransformPointer directionTransform)
 
void SetDirectionTransform (std::string directionTransformFile)
 
void SetFinalRadius (double FinalRadius)
 
void SetFloatingImage (InputImagePointer FloatingImage)
 
void SetInitialTransform (AffineTransformPointer initialTransform)
 
void SetInitialTransform (std::string initialTransformFile)
 
void SetLastPyramidLevel (unsigned int LastPyramidLevel)
 
void SetMaximumIterations (unsigned int MaximumIterations)
 
void SetMetric (Metric metric)
 
void SetMinimalTransformError (double MinimalTransformError)
 
void SetNumberOfPyramidLevels (unsigned int NumberOfPyramidLevels)
 
void SetOptimizer (Optimizer optimizer)
 
void SetOptimizerMaximumIterations (unsigned int OptimizerMaximumIterations)
 
void SetOutputNearestRigidTransformFile (std::string outputNRTransformFile)
 
void SetOutputNearestSimilarityTransformFile (std::string outputNearestSimilarityTransformFile)
 
void SetOutputTransform (BaseTransformPointer outputTransform)
 
void SetOutputTransformFile (std::string outputTransformFile)
 
void SetOutputTransformType (OutputTransform outputTransform)
 
void SetPercentageKept (double PercentageKept)
 
void SetProgressCallback (itk::CStyleCommand::Pointer callback)
 
void SetReferenceImage (InputImagePointer referenceImage)
 
void SetResultFile (std::string resultFile)
 
void SetScaleUpperBound (double ScaleUpperBound)
 
void SetSearchAngleRadius (double SearchAngleRadius)
 
void SetSearchRadius (double SearchRadius)
 
void SetSearchScaleRadius (double SearchScaleRadius)
 
void SetSeStoppingThreshold (double SeStoppingThreshold)
 
void SetStDevThreshold (double StDevThreshold)
 
void SetStepSize (double StepSize)
 
void SetSymmetryType (SymmetryType sym)
 
void SetTransform (Transform transform)
 
void SetTransformInitializationType (InitializationType transformInitializationType)
 
void SetTranslateUpperBound (double TranslateUpperBound)
 
void SetVerbose (bool value)
 
void Update () ITK_OVERRIDE
 
void WriteOutputs ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void EmitProgress (int prog)
 
 PyramidalBlockMatchingBridge ()
 
void SetupPyramids ()
 
virtual ~PyramidalBlockMatchingBridge ()
 

Static Protected Member Functions

static void ManageProgress (itk::Object *caller, const itk::EventObject &event, void *clientData)
 

Detailed Description

template<unsigned int ImageDimension = 3>
class anima::PyramidalBlockMatchingBridge< ImageDimension >

Definition at line 15 of file animaPyramidalBlockMatchingBridge.h.

Member Typedef Documentation

◆ AffineTransformPointer

template<unsigned int ImageDimension = 3>
typedef AffineTransformType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::AffineTransformPointer

Definition at line 35 of file animaPyramidalBlockMatchingBridge.h.

◆ AffineTransformType

template<unsigned int ImageDimension = 3>
typedef itk::AffineTransform<typename AgregatorType::ScalarType,ImageDimension> anima::PyramidalBlockMatchingBridge< ImageDimension >::AffineTransformType

Definition at line 34 of file animaPyramidalBlockMatchingBridge.h.

◆ AgregatorType

template<unsigned int ImageDimension = 3>
typedef anima::BaseTransformAgregator< ImageDimension > anima::PyramidalBlockMatchingBridge< ImageDimension >::AgregatorType

Definition at line 30 of file animaPyramidalBlockMatchingBridge.h.

◆ BaseBlockMatchRegistrationPointer

template<unsigned int ImageDimension = 3>
typedef BaseBlockMatchRegistrationType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationPointer

Definition at line 41 of file animaPyramidalBlockMatchingBridge.h.

◆ BaseBlockMatchRegistrationType

template<unsigned int ImageDimension = 3>
typedef anima::BaseBMRegistrationMethod<InputImageType> anima::PyramidalBlockMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationType

Definition at line 40 of file animaPyramidalBlockMatchingBridge.h.

◆ BaseTransformPointer

template<unsigned int ImageDimension = 3>
typedef BaseTransformType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::BaseTransformPointer

Definition at line 32 of file animaPyramidalBlockMatchingBridge.h.

◆ BaseTransformType

template<unsigned int ImageDimension = 3>
typedef AgregatorType::BaseOutputTransformType anima::PyramidalBlockMatchingBridge< ImageDimension >::BaseTransformType

Definition at line 31 of file animaPyramidalBlockMatchingBridge.h.

◆ ConstPointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<const Self> anima::PyramidalBlockMatchingBridge< ImageDimension >::ConstPointer

Definition at line 48 of file animaPyramidalBlockMatchingBridge.h.

◆ InputImageConstPointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::ConstPointer anima::PyramidalBlockMatchingBridge< ImageDimension >::InputImageConstPointer

Definition at line 21 of file animaPyramidalBlockMatchingBridge.h.

◆ InputImagePointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::InputImagePointer

Definition at line 20 of file animaPyramidalBlockMatchingBridge.h.

◆ InputImageType

template<unsigned int ImageDimension = 3>
typedef itk::Image<double,ImageDimension> anima::PyramidalBlockMatchingBridge< ImageDimension >::InputImageType

Definition at line 18 of file animaPyramidalBlockMatchingBridge.h.

◆ InputPixelType

template<unsigned int ImageDimension = 3>
typedef InputImageType::IOPixelType anima::PyramidalBlockMatchingBridge< ImageDimension >::InputPixelType

Definition at line 19 of file animaPyramidalBlockMatchingBridge.h.

◆ MaskImagePointer

template<unsigned int ImageDimension = 3>
typedef MaskImageType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::MaskImagePointer

Definition at line 26 of file animaPyramidalBlockMatchingBridge.h.

◆ MaskImageType

template<unsigned int ImageDimension = 3>
typedef itk::Image<unsigned char, ImageDimension> anima::PyramidalBlockMatchingBridge< ImageDimension >::MaskImageType

Definition at line 25 of file animaPyramidalBlockMatchingBridge.h.

◆ MaskPyramidPointer

template<unsigned int ImageDimension = 3>
typedef MaskPyramidType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::MaskPyramidPointer

Definition at line 28 of file animaPyramidalBlockMatchingBridge.h.

◆ MaskPyramidType

template<unsigned int ImageDimension = 3>
typedef anima::PyramidImageFilter<MaskImageType,MaskImageType> anima::PyramidalBlockMatchingBridge< ImageDimension >::MaskPyramidType

Definition at line 27 of file animaPyramidalBlockMatchingBridge.h.

◆ Pointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<Self> anima::PyramidalBlockMatchingBridge< ImageDimension >::Pointer

Definition at line 47 of file animaPyramidalBlockMatchingBridge.h.

◆ PointType

template<unsigned int ImageDimension = 3>
typedef InputImageType::PointType anima::PyramidalBlockMatchingBridge< ImageDimension >::PointType

Definition at line 23 of file animaPyramidalBlockMatchingBridge.h.

◆ PyramidPointer

template<unsigned int ImageDimension = 3>
typedef PyramidType::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::PyramidPointer

Definition at line 38 of file animaPyramidalBlockMatchingBridge.h.

◆ PyramidType

template<unsigned int ImageDimension = 3>
typedef anima::PyramidImageFilter<InputImageType,InputImageType> anima::PyramidalBlockMatchingBridge< ImageDimension >::PyramidType

Definition at line 37 of file animaPyramidalBlockMatchingBridge.h.

◆ Self

template<unsigned int ImageDimension = 3>
typedef PyramidalBlockMatchingBridge anima::PyramidalBlockMatchingBridge< ImageDimension >::Self

SmartPointer typedef support

Definition at line 44 of file animaPyramidalBlockMatchingBridge.h.

◆ Superclass

template<unsigned int ImageDimension = 3>
typedef itk::ProcessObject anima::PyramidalBlockMatchingBridge< ImageDimension >::Superclass

Definition at line 45 of file animaPyramidalBlockMatchingBridge.h.

Member Enumeration Documentation

◆ Agregator

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::Agregator
Enumerator
MEstimation 
LeastSquares 
LeastTrimmedSquares 

Definition at line 88 of file animaPyramidalBlockMatchingBridge.h.

◆ InitializationType

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::InitializationType
Enumerator
Identity 
GravityCenters 
ClosestTransform 

Definition at line 53 of file animaPyramidalBlockMatchingBridge.h.

◆ Metric

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::Metric
Enumerator
SquaredCorrelation 
Correlation 
MeanSquares 

Definition at line 75 of file animaPyramidalBlockMatchingBridge.h.

◆ Optimizer

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::Optimizer
Enumerator
Exhaustive 
Bobyqa 

Definition at line 82 of file animaPyramidalBlockMatchingBridge.h.

◆ OutputTransform

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::OutputTransform
Enumerator
outRigid 
outTranslation 
outAffine 
outAnisotropic_Sim 

Definition at line 95 of file animaPyramidalBlockMatchingBridge.h.

◆ SymmetryType

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::SymmetryType
Enumerator
Asymmetric 
Symmetric 
Kissing 

Definition at line 60 of file animaPyramidalBlockMatchingBridge.h.

◆ Transform

template<unsigned int ImageDimension = 3>
enum anima::PyramidalBlockMatchingBridge::Transform
Enumerator
Translation 
Rigid 
Affine 
Directional_Affine 

Definition at line 67 of file animaPyramidalBlockMatchingBridge.h.

Constructor & Destructor Documentation

◆ PyramidalBlockMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalBlockMatchingBridge< ImageDimension >::PyramidalBlockMatchingBridge ( )
protected

Definition at line 24 of file animaPyramidalBlockMatchingBridge.hxx.

References Asymmetric, Bobyqa, SquaredCorrelation, and Translation.

Referenced by anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose().

◆ ~PyramidalBlockMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalBlockMatchingBridge< ImageDimension >::~PyramidalBlockMatchingBridge ( )
protectedvirtual

Definition at line 82 of file animaPyramidalBlockMatchingBridge.hxx.

Referenced by anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose().

Member Function Documentation

◆ Abort()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::Abort ( )

Definition at line 87 of file animaPyramidalBlockMatchingBridge.hxx.

◆ CreateAnother()

template<unsigned int ImageDimension = 3>
virtual::itk::LightObject::Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::CreateAnother ( void  ) const

◆ EmitProgress()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::EmitProgress ( int  prog)
protected

Definition at line 539 of file animaPyramidalBlockMatchingBridge.hxx.

Referenced by anima::PyramidalBlockMatchingBridge< ImageDimension >::ManageProgress(), and anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose().

◆ GetAffineDirection()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetAffineDirection ( )
inline

Definition at line 160 of file animaPyramidalBlockMatchingBridge.h.

◆ GetAgregator()

template<unsigned int ImageDimension = 3>
Agregator anima::PyramidalBlockMatchingBridge< ImageDimension >::GetAgregator ( )
inline

Definition at line 202 of file animaPyramidalBlockMatchingBridge.h.

◆ GetAgregThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetAgregThreshold ( )
inline

Definition at line 208 of file animaPyramidalBlockMatchingBridge.h.

◆ GetAngleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetAngleUpperBound ( )
inline

Definition at line 196 of file animaPyramidalBlockMatchingBridge.h.

◆ GetBlockSize()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetBlockSize ( )
inline

Definition at line 145 of file animaPyramidalBlockMatchingBridge.h.

◆ GetBlockSpacing()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetBlockSpacing ( )
inline

Definition at line 148 of file animaPyramidalBlockMatchingBridge.h.

◆ GetFinalRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetFinalRadius ( )
inline

Definition at line 187 of file animaPyramidalBlockMatchingBridge.h.

◆ GetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetLastPyramidLevel ( )
inline

Definition at line 217 of file animaPyramidalBlockMatchingBridge.h.

◆ GetMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetMaximumIterations ( )
inline

Definition at line 169 of file animaPyramidalBlockMatchingBridge.h.

◆ GetMetric()

template<unsigned int ImageDimension = 3>
Metric anima::PyramidalBlockMatchingBridge< ImageDimension >::GetMetric ( )
inline

Definition at line 163 of file animaPyramidalBlockMatchingBridge.h.

◆ GetMinimalTransformError()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetMinimalTransformError ( )
inline

Definition at line 172 of file animaPyramidalBlockMatchingBridge.h.

◆ GetNameOfClass()

template<unsigned int ImageDimension = 3>
virtual const char* anima::PyramidalBlockMatchingBridge< ImageDimension >::GetNameOfClass ( ) const
virtual

◆ GetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetNumberOfPyramidLevels ( )
inline

Definition at line 214 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOptimizer()

template<unsigned int ImageDimension = 3>
Optimizer anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOptimizer ( )
inline

Definition at line 166 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOptimizerMaximumIterations ( )
inline

Definition at line 175 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputImage()

template<unsigned int ImageDimension = 3>
InputImagePointer anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputImage ( )
inline

Definition at line 113 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputNearestRigidTransformFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputNearestRigidTransformFile ( )
inline

Definition at line 139 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputNearestSimilarityTransformFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputNearestSimilarityTransformFile ( )
inline

Definition at line 142 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputTransform()

template<unsigned int ImageDimension = 3>
BaseTransformPointer anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputTransform ( )
inline

Definition at line 124 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputTransformFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputTransformFile ( )
inline

Definition at line 136 of file animaPyramidalBlockMatchingBridge.h.

◆ GetOutputTransformType()

template<unsigned int ImageDimension = 3>
OutputTransform anima::PyramidalBlockMatchingBridge< ImageDimension >::GetOutputTransformType ( )
inline

Definition at line 205 of file animaPyramidalBlockMatchingBridge.h.

◆ GetPercentageKept()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetPercentageKept ( )
inline

Definition at line 220 of file animaPyramidalBlockMatchingBridge.h.

◆ GetResultFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalBlockMatchingBridge< ImageDimension >::GetResultFile ( )
inline

Setter/Getter for parameters

Definition at line 133 of file animaPyramidalBlockMatchingBridge.h.

◆ GetScaleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetScaleUpperBound ( )
inline

Definition at line 199 of file animaPyramidalBlockMatchingBridge.h.

◆ GetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetSearchAngleRadius ( )
inline

Definition at line 181 of file animaPyramidalBlockMatchingBridge.h.

◆ GetSearchRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetSearchRadius ( )
inline

Definition at line 178 of file animaPyramidalBlockMatchingBridge.h.

◆ GetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetSearchScaleRadius ( )
inline

Definition at line 184 of file animaPyramidalBlockMatchingBridge.h.

◆ GetSeStoppingThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetSeStoppingThreshold ( )
inline

Definition at line 211 of file animaPyramidalBlockMatchingBridge.h.

◆ GetStDevThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetStDevThreshold ( )
inline

Definition at line 151 of file animaPyramidalBlockMatchingBridge.h.

◆ GetStepSize()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetStepSize ( )
inline

Definition at line 190 of file animaPyramidalBlockMatchingBridge.h.

◆ GetSymmetryType()

template<unsigned int ImageDimension = 3>
SymmetryType anima::PyramidalBlockMatchingBridge< ImageDimension >::GetSymmetryType ( )
inline

Definition at line 154 of file animaPyramidalBlockMatchingBridge.h.

◆ GetTransform()

template<unsigned int ImageDimension = 3>
Transform anima::PyramidalBlockMatchingBridge< ImageDimension >::GetTransform ( )
inline

Definition at line 157 of file animaPyramidalBlockMatchingBridge.h.

◆ GetTransformInitializationType()

template<unsigned int ImageDimension = 3>
InitializationType anima::PyramidalBlockMatchingBridge< ImageDimension >::GetTransformInitializationType ( )
inline

Definition at line 223 of file animaPyramidalBlockMatchingBridge.h.

◆ GetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalBlockMatchingBridge< ImageDimension >::GetTranslateUpperBound ( )
inline

Definition at line 193 of file animaPyramidalBlockMatchingBridge.h.

◆ ManageProgress()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::ManageProgress ( itk::Object *  caller,
const itk::EventObject &  event,
void *  clientData 
)
staticprotected

Definition at line 546 of file animaPyramidalBlockMatchingBridge.hxx.

References anima::PyramidalBlockMatchingBridge< ImageDimension >::EmitProgress().

Referenced by anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose().

◆ New()

template<unsigned int ImageDimension = 3>
static Pointer anima::PyramidalBlockMatchingBridge< ImageDimension >::New ( )
static

◆ SetAffineDirection()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetAffineDirection ( unsigned int  val)
inline

Definition at line 161 of file animaPyramidalBlockMatchingBridge.h.

◆ SetAgregator()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetAgregator ( Agregator  agregator)
inline

Definition at line 203 of file animaPyramidalBlockMatchingBridge.h.

◆ SetAgregThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetAgregThreshold ( double  AgregThreshold)
inline

Definition at line 209 of file animaPyramidalBlockMatchingBridge.h.

◆ SetAngleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetAngleUpperBound ( double  AngleUpperBound)
inline

Definition at line 197 of file animaPyramidalBlockMatchingBridge.h.

◆ SetBlockGenerationMask()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetBlockGenerationMask ( MaskImageType *  mask)
inline

Definition at line 226 of file animaPyramidalBlockMatchingBridge.h.

◆ SetBlockSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetBlockSize ( int  blockSize)
inline

Definition at line 146 of file animaPyramidalBlockMatchingBridge.h.

◆ SetBlockSpacing()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetBlockSpacing ( unsigned int  blockSpacing)
inline

Definition at line 149 of file animaPyramidalBlockMatchingBridge.h.

◆ SetDirectionTransform() [1/2]

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetDirectionTransform ( AffineTransformPointer  directionTransform)
inline

Definition at line 121 of file animaPyramidalBlockMatchingBridge.h.

◆ SetDirectionTransform() [2/2]

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetDirectionTransform ( std::string  directionTransformFile)

Definition at line 121 of file animaPyramidalBlockMatchingBridge.hxx.

◆ SetFinalRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetFinalRadius ( double  FinalRadius)
inline

Definition at line 188 of file animaPyramidalBlockMatchingBridge.h.

◆ SetFloatingImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetFloatingImage ( InputImagePointer  FloatingImage)
inline

Definition at line 111 of file animaPyramidalBlockMatchingBridge.h.

◆ SetInitialTransform() [1/2]

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetInitialTransform ( AffineTransformPointer  initialTransform)
inline

Setter for transform

Definition at line 118 of file animaPyramidalBlockMatchingBridge.h.

◆ SetInitialTransform() [2/2]

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetInitialTransform ( std::string  initialTransformFile)

Definition at line 96 of file animaPyramidalBlockMatchingBridge.hxx.

◆ SetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetLastPyramidLevel ( unsigned int  LastPyramidLevel)
inline

Definition at line 218 of file animaPyramidalBlockMatchingBridge.h.

◆ SetMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetMaximumIterations ( unsigned int  MaximumIterations)
inline

Definition at line 170 of file animaPyramidalBlockMatchingBridge.h.

◆ SetMetric()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetMetric ( Metric  metric)
inline

Definition at line 164 of file animaPyramidalBlockMatchingBridge.h.

◆ SetMinimalTransformError()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetMinimalTransformError ( double  MinimalTransformError)
inline

Definition at line 173 of file animaPyramidalBlockMatchingBridge.h.

◆ SetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetNumberOfPyramidLevels ( unsigned int  NumberOfPyramidLevels)
inline

Definition at line 215 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOptimizer()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOptimizer ( Optimizer  optimizer)
inline

Definition at line 167 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOptimizerMaximumIterations ( unsigned int  OptimizerMaximumIterations)
inline

Definition at line 176 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOutputNearestRigidTransformFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOutputNearestRigidTransformFile ( std::string  outputNRTransformFile)
inline

Definition at line 140 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOutputNearestSimilarityTransformFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOutputNearestSimilarityTransformFile ( std::string  outputNearestSimilarityTransformFile)
inline

Definition at line 143 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOutputTransform()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOutputTransform ( BaseTransformPointer  outputTransform)
inline

Definition at line 125 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOutputTransformFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOutputTransformFile ( std::string  outputTransformFile)
inline

Definition at line 137 of file animaPyramidalBlockMatchingBridge.h.

◆ SetOutputTransformType()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetOutputTransformType ( OutputTransform  outputTransform)
inline

Definition at line 206 of file animaPyramidalBlockMatchingBridge.h.

◆ SetPercentageKept()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetPercentageKept ( double  PercentageKept)
inline

Definition at line 221 of file animaPyramidalBlockMatchingBridge.h.

◆ SetProgressCallback()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetProgressCallback ( itk::CStyleCommand::Pointer  callback)
inline

Definition at line 127 of file animaPyramidalBlockMatchingBridge.h.

◆ SetReferenceImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetReferenceImage ( InputImagePointer  referenceImage)
inline

Setter for images

Definition at line 110 of file animaPyramidalBlockMatchingBridge.h.

◆ SetResultFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetResultFile ( std::string  resultFile)
inline

Definition at line 134 of file animaPyramidalBlockMatchingBridge.h.

◆ SetScaleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetScaleUpperBound ( double  ScaleUpperBound)
inline

Definition at line 200 of file animaPyramidalBlockMatchingBridge.h.

◆ SetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetSearchAngleRadius ( double  SearchAngleRadius)
inline

Definition at line 182 of file animaPyramidalBlockMatchingBridge.h.

◆ SetSearchRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetSearchRadius ( double  SearchRadius)
inline

Definition at line 179 of file animaPyramidalBlockMatchingBridge.h.

◆ SetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetSearchScaleRadius ( double  SearchScaleRadius)
inline

Definition at line 185 of file animaPyramidalBlockMatchingBridge.h.

◆ SetSeStoppingThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetSeStoppingThreshold ( double  SeStoppingThreshold)
inline

Definition at line 212 of file animaPyramidalBlockMatchingBridge.h.

◆ SetStDevThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetStDevThreshold ( double  StDevThreshold)
inline

Definition at line 152 of file animaPyramidalBlockMatchingBridge.h.

◆ SetStepSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetStepSize ( double  StepSize)
inline

Definition at line 191 of file animaPyramidalBlockMatchingBridge.h.

◆ SetSymmetryType()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetSymmetryType ( SymmetryType  sym)
inline

Definition at line 155 of file animaPyramidalBlockMatchingBridge.h.

◆ SetTransform()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetTransform ( Transform  transform)
inline

Definition at line 158 of file animaPyramidalBlockMatchingBridge.h.

◆ SetTransformInitializationType()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetTransformInitializationType ( InitializationType  transformInitializationType)
inline

Definition at line 224 of file animaPyramidalBlockMatchingBridge.h.

◆ SetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetTranslateUpperBound ( double  TranslateUpperBound)
inline

Definition at line 194 of file animaPyramidalBlockMatchingBridge.h.

◆ SetupPyramids()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetupPyramids ( )
protected

Definition at line 645 of file animaPyramidalBlockMatchingBridge.hxx.

Referenced by anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose().

◆ SetVerbose()

template<unsigned int ImageDimension = 3>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::SetVerbose ( bool  value)
inline

Definition at line 228 of file animaPyramidalBlockMatchingBridge.h.

References anima::PyramidalBlockMatchingBridge< ImageDimension >::EmitProgress(), anima::PyramidalBlockMatchingBridge< ImageDimension >::ManageProgress(), anima::PyramidalBlockMatchingBridge< ImageDimension >::PyramidalBlockMatchingBridge(), anima::PyramidalBlockMatchingBridge< ImageDimension >::SetupPyramids(), and anima::PyramidalBlockMatchingBridge< ImageDimension >::~PyramidalBlockMatchingBridge().

◆ Update()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::Update ( )

Definition at line 146 of file animaPyramidalBlockMatchingBridge.hxx.

References Affine, Asymmetric, Bobyqa, Correlation, Exhaustive, Kissing, MeanSquares, Rigid, anima::BaseBlockMatcher< TInputImageType >::SetBlockPercentageKept(), anima::LTSWTransformAgregator< NDimensions >::SetLTSCut(), anima::MEstTransformAgregator< NDimensions >::SetMEstimateFactor(), SquaredCorrelation, Symmetric, and Translation.

◆ WriteOutputs()

template<unsigned int ImageDimension>
void anima::PyramidalBlockMatchingBridge< ImageDimension >::WriteOutputs ( )

Definition at line 556 of file animaPyramidalBlockMatchingBridge.hxx.

The documentation for this class was generated from the following files:
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