anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType > Class Template Reference

#include <animaGMMT2RelaxometryEstimationImageFilter.h>

Inheritance diagram for anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >:

Collaboration diagram for anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef InputImageType::IndexType	IndexType
typedef InputImageType::Pointer	InputImagePointer
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef Superclass::MaskImageType	MaskImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef VectorOutputImageType::PixelType	OutputVectorType
typedef itk::SmartPointer< Self >	Pointer
typedef GMMT2RelaxometryEstimationImageFilter	Self
typedef anima::MaskedImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef itk::Image< TPixelScalarType, 3 >	TInputImage
typedef itk::Image< TPixelScalarType, 3 >	TOutputImage
typedef VectorOutputImageType::Pointer	VectorOutputImagePointer
typedef itk::VectorImage< TPixelScalarType, 3 >	VectorOutputImageType
Public Types inherited from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef MaskImageType::Pointer	MaskImagePointer
typedef itk::Image< unsigned char, itk::Image< TPixelScalarType, 3 > ::ImageDimension >	MaskImageType
typedef MaskImageType::IndexType	MaskIndexType
typedef MaskImageType::RegionType	MaskRegionType
typedef MaskImageType::SizeType	MaskSizeType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef MaskedImageToImageFilter	Self
typedef anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >	Superclass
typedef itk::ImageSource< itk::Image< TPixelScalarType, 3 > >::ThreadStruct	ThreadStruct
Public Types inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef NumberedThreadImageToImageFilter	Self
typedef itk::ImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >	Superclass
typedef itk::ImageSource< itk::Image< TPixelScalarType, 3 > >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
InputImageType *	GetB1OutputImage ()
InputImageType *	GetM0OutputImage ()
InputImageType *	GetMWFOutputImage ()
virtual const char *	GetNameOfClass () const
InputImageType *	GetSigmaSquareOutputImage ()
InputImageType *	GetT1Map ()
VectorOutputImageType *	GetWeightsImage ()
virtual void	SetAverageSignalThreshold (double _arg)
virtual void	SetEchoSpacing (double _arg)
virtual void	SetGaussianIntegralTolerance (double _arg)
void	SetGaussianMeans (std::string fileName)
void	SetGaussianVariances (std::string fileName)
void	SetT1Map (InputImageType *map)
virtual void	SetT2ExcitationFlipAngle (double _arg)
void	SetT2FlipAngles (std::vector< double > &flipAngles)
void	SetT2FlipAngles (double singleAngle, unsigned int numAngles)
Public Member Functions inherited from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual MaskImageType *	GetComputationMask ()
virtual void	SetComputationMask (MaskImagePointer _arg)
Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual OutputImageRegionType	GetComputationRegion ()
virtual void	SetComputationRegion (OutputImageRegionType _arg)
virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
static Pointer	New ()
Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
static Pointer	New ()

Protected Member Functions
void	BeforeThreadedGenerateData () ITK_OVERRIDE
void	CheckComputationMask () ITK_OVERRIDE
void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
	GMMT2RelaxometryEstimationImageFilter ()
virtual	~GMMT2RelaxometryEstimationImageFilter ()
Protected Member Functions inherited from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
void	InitializeComputationRegionFromMask ()
	MaskedImageToImageFilter ()
virtual	~MaskedImageToImageFilter ()
Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
virtual void	GenerateData () ITK_OVERRIDE
unsigned int	GetSafeThreadId ()
void	IncrementNumberOfProcessedPoints ()
void	InitializeZeroPixel (itk::Image< TPixelScalarType, 3 > *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...
void	InitializeZeroPixel (itk::Image< TPixelScalarType, 3 > *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...
	NumberedThreadImageToImageFilter ()
void	SafeReleaseThreadId (unsigned int threadId)
virtual void	ThreadProcessSlices ()
virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
static constexpr unsigned int	OutputImageDimension
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<class TPixelScalarType>
class anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >

Definition at line 11 of file animaGMMT2RelaxometryEstimationImageFilter.h.

Member Typedef Documentation

ConstPointer

template<class TPixelScalarType >

typedef itk::SmartPointer<const Self> anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::ConstPointer

Definition at line 21 of file animaGMMT2RelaxometryEstimationImageFilter.h.

IndexType

template<class TPixelScalarType >

typedef InputImageType::IndexType anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::IndexType

Definition at line 31 of file animaGMMT2RelaxometryEstimationImageFilter.h.

InputImagePointer

template<class TPixelScalarType >

typedef InputImageType::Pointer anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::InputImagePointer

Definition at line 35 of file animaGMMT2RelaxometryEstimationImageFilter.h.

InputImageRegionType

template<class TPixelScalarType >

typedef Superclass::InputImageRegionType anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::InputImageRegionType

Definition at line 41 of file animaGMMT2RelaxometryEstimationImageFilter.h.

InputImageType

template<class TPixelScalarType >

typedef TInputImage anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::InputImageType

Image typedef support

Definition at line 30 of file animaGMMT2RelaxometryEstimationImageFilter.h.

MaskImageType

template<class TPixelScalarType >

typedef Superclass::MaskImageType anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::MaskImageType

Superclass typedefs.

Definition at line 40 of file animaGMMT2RelaxometryEstimationImageFilter.h.

OutputImagePointer

template<class TPixelScalarType >

typedef OutputImageType::Pointer anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::OutputImagePointer

Definition at line 36 of file animaGMMT2RelaxometryEstimationImageFilter.h.

OutputImageRegionType

template<class TPixelScalarType >

typedef Superclass::OutputImageRegionType anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::OutputImageRegionType

Definition at line 42 of file animaGMMT2RelaxometryEstimationImageFilter.h.

OutputImageType

template<class TPixelScalarType >

typedef TOutputImage anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::OutputImageType

Definition at line 32 of file animaGMMT2RelaxometryEstimationImageFilter.h.

OutputVectorType

template<class TPixelScalarType >

typedef VectorOutputImageType::PixelType anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::OutputVectorType

Definition at line 34 of file animaGMMT2RelaxometryEstimationImageFilter.h.

Pointer

template<class TPixelScalarType >

typedef itk::SmartPointer<Self> anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::Pointer

Definition at line 20 of file animaGMMT2RelaxometryEstimationImageFilter.h.

Self

template<class TPixelScalarType >

typedef GMMT2RelaxometryEstimationImageFilter anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::Self

Standard class typedefs.

Definition at line 16 of file animaGMMT2RelaxometryEstimationImageFilter.h.

Superclass

template<class TPixelScalarType >

typedef anima::MaskedImageToImageFilter< TInputImage, TOutputImage > anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::Superclass

Definition at line 19 of file animaGMMT2RelaxometryEstimationImageFilter.h.

TInputImage

template<class TPixelScalarType >

typedef itk::Image<TPixelScalarType, 3> anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::TInputImage

Definition at line 17 of file animaGMMT2RelaxometryEstimationImageFilter.h.

TOutputImage

template<class TPixelScalarType >

typedef itk::Image<TPixelScalarType, 3> anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::TOutputImage

Definition at line 18 of file animaGMMT2RelaxometryEstimationImageFilter.h.

VectorOutputImagePointer

template<class TPixelScalarType >

typedef VectorOutputImageType::Pointer anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::VectorOutputImagePointer

Definition at line 37 of file animaGMMT2RelaxometryEstimationImageFilter.h.

VectorOutputImageType

template<class TPixelScalarType >

typedef itk::VectorImage<TPixelScalarType, 3> anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::VectorOutputImageType

Definition at line 33 of file animaGMMT2RelaxometryEstimationImageFilter.h.

Constructor & Destructor Documentation

GMMT2RelaxometryEstimationImageFilter()

template<class TPixelScalarType >

anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GMMT2RelaxometryEstimationImageFilter ( )

inlineprotected

Definition at line 67 of file animaGMMT2RelaxometryEstimationImageFilter.h.

~GMMT2RelaxometryEstimationImageFilter()

template<class TPixelScalarType >

virtual anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::~GMMT2RelaxometryEstimationImageFilter ( )

inlineprotectedvirtual

Definition at line 94 of file animaGMMT2RelaxometryEstimationImageFilter.h.

References anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::BeforeThreadedGenerateData(), anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::CheckComputationMask(), and anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::DynamicThreadedGenerateData().

Member Function Documentation

BeforeThreadedGenerateData()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::BeforeThreadedGenerateData ( )

protectedvirtual

Reimplemented from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >.

Definition at line 90 of file animaGMMT2RelaxometryEstimationImageFilter.hxx.

Referenced by anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::~GMMT2RelaxometryEstimationImageFilter().

CheckComputationMask()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::CheckComputationMask ( )

protectedvirtual

Reimplemented from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >.

Definition at line 116 of file animaGMMT2RelaxometryEstimationImageFilter.hxx.

Referenced by anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::~GMMT2RelaxometryEstimationImageFilter().

CreateAnother()

template<class TPixelScalarType >

virtual::itk::LightObject::Pointer anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::CreateAnother

(

void

)

const

DynamicThreadedGenerateData()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::DynamicThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread )

protected

Definition at line 164 of file animaGMMT2RelaxometryEstimationImageFilter.hxx.

Referenced by anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::~GMMT2RelaxometryEstimationImageFilter().

GetB1OutputImage()

template<class TPixelScalarType >

InputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetB1OutputImage ( )

inline

Definition at line 53 of file animaGMMT2RelaxometryEstimationImageFilter.h.

GetM0OutputImage()

template<class TPixelScalarType >

InputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetM0OutputImage ( )

inline

Definition at line 51 of file animaGMMT2RelaxometryEstimationImageFilter.h.

GetMWFOutputImage()

template<class TPixelScalarType >

InputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetMWFOutputImage ( )

inline

Definition at line 52 of file animaGMMT2RelaxometryEstimationImageFilter.h.

GetNameOfClass()

template<class TPixelScalarType >

virtual const char* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from anima::MaskedImageToImageFilter< itk::Image< TPixelScalarType, 3 >, itk::Image< TPixelScalarType, 3 > >.

GetSigmaSquareOutputImage()

template<class TPixelScalarType >

InputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetSigmaSquareOutputImage ( )

inline

Definition at line 54 of file animaGMMT2RelaxometryEstimationImageFilter.h.

GetT1Map()

template<class TPixelScalarType >

InputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetT1Map ( )

inline

Definition at line 47 of file animaGMMT2RelaxometryEstimationImageFilter.h.

GetWeightsImage()

template<class TPixelScalarType >

VectorOutputImageType* anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetWeightsImage ( )

inline

Definition at line 55 of file animaGMMT2RelaxometryEstimationImageFilter.h.

References anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetGaussianMeans(), and anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetGaussianVariances().

New()

template<class TPixelScalarType >

static Pointer anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::New ( )

static

Method for creation through the object factory.

SetAverageSignalThreshold()

template<class TPixelScalarType >

virtual void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetAverageSignalThreshold ( double  _arg )

virtual

SetEchoSpacing()

template<class TPixelScalarType >

virtual void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetEchoSpacing ( double  _arg )

virtual

SetGaussianIntegralTolerance()

template<class TPixelScalarType >

virtual void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetGaussianIntegralTolerance ( double  _arg )

virtual

SetGaussianMeans()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetGaussianMeans

(

std::string

fileName

)

Definition at line 20 of file animaGMMT2RelaxometryEstimationImageFilter.hxx.

Referenced by anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetWeightsImage().

SetGaussianVariances()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetGaussianVariances

(

std::string

fileName

)

Definition at line 55 of file animaGMMT2RelaxometryEstimationImageFilter.hxx.

Referenced by anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::GetWeightsImage().

SetT1Map()

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetT1Map ( InputImageType *  map )

inline

Definition at line 46 of file animaGMMT2RelaxometryEstimationImageFilter.h.

SetT2ExcitationFlipAngle()

template<class TPixelScalarType >

virtual void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetT2ExcitationFlipAngle ( double  _arg )

virtual

SetT2FlipAngles() [1/2]

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetT2FlipAngles ( std::vector< double > &  flipAngles )

inline

Definition at line 63 of file animaGMMT2RelaxometryEstimationImageFilter.h.

SetT2FlipAngles() [2/2]

template<class TPixelScalarType >

void anima::GMMT2RelaxometryEstimationImageFilter< TPixelScalarType >::SetT2FlipAngles ( double  singleAngle, unsigned int  numAngles  )

inline

Definition at line 64 of file animaGMMT2RelaxometryEstimationImageFilter.h.

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The documentation for this class was generated from the following files:

• animaGMMT2RelaxometryEstimationImageFilter.h
• animaGMMT2RelaxometryEstimationImageFilter.hxx