ANIMA
4.0
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#include <animaDTIEstimationImageFilter.h>
Classes | |
struct | OptimizationDataStructure |
Public Types | |
typedef itk::SmartPointer< const Self > | ConstPointer |
typedef OutputImageType | DTIImageType |
typedef itk::Image< InputPixelScalarType, 4 > | Image4DType |
typedef InputImageType::Pointer | InputImagePointer |
typedef Superclass::InputImageRegionType | InputImageRegionType |
typedef itk::Image< InputPixelScalarType, 3 > | InputImageType |
typedef Superclass::MaskImageType | MaskImageType |
typedef itk::Image< OutputPixelScalarType, 3 > | OutputB0ImageType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef itk::VectorImage< OutputPixelScalarType, 3 > | OutputImageType |
typedef itk::SmartPointer< Self > | Pointer |
typedef DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType > | Self |
typedef anima::MaskedImageToImageFilter< InputImageType, OutputImageType > | Superclass |
Public Types inherited from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
typedef itk::SmartPointer< const Self > | ConstPointer |
typedef Superclass::InputImageRegionType | InputImageRegionType |
typedef MaskImageType::Pointer | MaskImagePointer |
typedef itk::Image< unsigned char, itk::Image< InputPixelScalarType, 3 > ::ImageDimension > | MaskImageType |
typedef MaskImageType::IndexType | MaskIndexType |
typedef MaskImageType::RegionType | MaskRegionType |
typedef MaskImageType::SizeType | MaskSizeType |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef itk::SmartPointer< Self > | Pointer |
typedef MaskedImageToImageFilter | Self |
typedef anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | Superclass |
typedef itk::ImageSource< itk::VectorImage< OutputPixelScalarType, 3 > >::ThreadStruct | ThreadStruct |
Public Types inherited from anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
typedef itk::SmartPointer< const Self > | ConstPointer |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef itk::SmartPointer< Self > | Pointer |
typedef NumberedThreadImageToImageFilter | Self |
typedef itk::ImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | Superclass |
typedef itk::ImageSource< itk::VectorImage< OutputPixelScalarType, 3 > >::ThreadStruct | ThreadStruct |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
static Pointer | New () |
Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
static Pointer | New () |
Protected Member Functions | |
void | BeforeThreadedGenerateData () ITK_OVERRIDE |
void | CheckComputationMask () ITK_OVERRIDE |
double | ComputeB0AndVarianceFromTensorVector (const vnl_matrix< double > &tensorValue, const std::vector< double > &dwiSignal, double &outVarianceValue) |
double | ComputeCostAtPosition (const std::vector< double > &x, const std::vector< double > &observedData, std::vector< double > &predictedValues, vnl_matrix< double > &rotationMatrix, vnl_matrix< double > &workTensor, vnl_diag_matrix< double > &workEigenValues) |
DTIEstimationImageFilter () | |
void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE |
void | GenerateOutputInformation () ITK_OVERRIDE |
virtual | ~DTIEstimationImageFilter () |
Protected Member Functions inherited from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
void | InitializeComputationRegionFromMask () |
MaskedImageToImageFilter () | |
virtual | ~MaskedImageToImageFilter () |
Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
virtual void | GenerateData () ITK_OVERRIDE |
unsigned int | GetSafeThreadId () |
void | IncrementNumberOfProcessedPoints () |
void | InitializeZeroPixel (itk::VectorImage< OutputPixelScalarType, 3 > *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel) |
Utility function to initialize output images pixel to zero for vector images. More... | |
void | InitializeZeroPixel (itk::VectorImage< OutputPixelScalarType, 3 > *, PixelType &zeroPixel) |
Utility function to initialize output images pixel to zero for all images except vector images. More... | |
NumberedThreadImageToImageFilter () | |
void | SafeReleaseThreadId (unsigned int threadId) |
virtual void | ThreadProcessSlices () |
virtual | ~NumberedThreadImageToImageFilter () |
Static Protected Member Functions | |
static double | OptimizationFunction (const std::vector< double > &x, std::vector< double > &grad, void *func_data) |
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION | ThreaderMultiSplitCallback (void *arg) |
Additional Inherited Members | |
Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > > | |
static constexpr unsigned int | OutputImageDimension |
Definition at line 11 of file animaDTIEstimationImageFilter.h.
typedef itk::SmartPointer<const Self> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ConstPointer |
Definition at line 24 of file animaDTIEstimationImageFilter.h.
typedef OutputImageType anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::DTIImageType |
Definition at line 20 of file animaDTIEstimationImageFilter.h.
typedef itk::Image<InputPixelScalarType,4> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::Image4DType |
Definition at line 21 of file animaDTIEstimationImageFilter.h.
typedef InputImageType::Pointer anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::InputImagePointer |
Image typedef support
Definition at line 33 of file animaDTIEstimationImageFilter.h.
typedef Superclass::InputImageRegionType anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::InputImageRegionType |
Definition at line 38 of file animaDTIEstimationImageFilter.h.
typedef itk::Image<InputPixelScalarType,3> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::InputImageType |
Definition at line 17 of file animaDTIEstimationImageFilter.h.
typedef Superclass::MaskImageType anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::MaskImageType |
Superclass typedefs.
Definition at line 37 of file animaDTIEstimationImageFilter.h.
typedef itk::Image<OutputPixelScalarType,3> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OutputB0ImageType |
Definition at line 19 of file animaDTIEstimationImageFilter.h.
typedef OutputImageType::Pointer anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OutputImagePointer |
Definition at line 34 of file animaDTIEstimationImageFilter.h.
typedef Superclass::OutputImageRegionType anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OutputImageRegionType |
Definition at line 39 of file animaDTIEstimationImageFilter.h.
typedef itk::VectorImage<OutputPixelScalarType,3> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OutputImageType |
Definition at line 18 of file animaDTIEstimationImageFilter.h.
typedef itk::SmartPointer<Self> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::Pointer |
Definition at line 23 of file animaDTIEstimationImageFilter.h.
typedef DTIEstimationImageFilter<InputPixelScalarType, OutputPixelScalarType> anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::Self |
Standard class typedefs.
Definition at line 16 of file animaDTIEstimationImageFilter.h.
typedef anima::MaskedImageToImageFilter< InputImageType, OutputImageType > anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::Superclass |
Definition at line 22 of file animaDTIEstimationImageFilter.h.
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Definition at line 60 of file animaDTIEstimationImageFilter.h.
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Definition at line 70 of file animaDTIEstimationImageFilter.h.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::BeforeThreadedGenerateData(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::CheckComputationMask(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ComputeB0AndVarianceFromTensorVector(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ComputeCostAtPosition(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::DynamicThreadedGenerateData(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::GenerateOutputInformation(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationFunction().
void anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::AddGradientDirection | ( | unsigned int | i, |
vnl_vector_fixed< double, 3 > & | grad | ||
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Reimplemented from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > >.
Definition at line 90 of file animaDTIEstimationImageFilter.hxx.
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::GenerateOutputInformation(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Reimplemented from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > >.
Definition at line 36 of file animaDTIEstimationImageFilter.hxx.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::GenerateOutputInformation().
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::AddGradientDirection(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Definition at line 342 of file animaDTIEstimationImageFilter.hxx.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationFunction().
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::DynamicThreadedGenerateData(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Definition at line 392 of file animaDTIEstimationImageFilter.hxx.
References anima::Get3DRotationExponential(), and anima::RecomposeTensor().
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationFunction(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
virtual::itk::LightObject::Pointer anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::CreateAnother | ( | void | ) | const |
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Definition at line 160 of file animaDTIEstimationImageFilter.hxx.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ComputeB0AndVarianceFromTensorVector(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::dwi, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::filter, anima::Get3DRotationExponential(), anima::Get3DRotationLogarithm(), anima::GetTensorFromVectorRepresentation(), anima::GetVectorRepresentation(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::predictedValues, anima::RecomposeTensor(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::rotationMatrix, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::workEigenValues, and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::workTensor.
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::BeforeThreadedGenerateData(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Definition at line 76 of file animaDTIEstimationImageFilter.hxx.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::BeforeThreadedGenerateData().
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::CheckComputationMask(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Run-time type information (and related methods)
Reimplemented from anima::MaskedImageToImageFilter< itk::Image< InputPixelScalarType, 3 >, itk::VectorImage< OutputPixelScalarType, 3 > >.
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Method for creation through the object factory.
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Definition at line 382 of file animaDTIEstimationImageFilter.hxx.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ComputeCostAtPosition(), anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::dwi, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::filter, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::predictedValues, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::rotationMatrix, anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::workEigenValues, and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::OptimizationDataStructure::workTensor.
Referenced by anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::ComputeB0AndVarianceFromTensorVector(), and anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::~DTIEstimationImageFilter().
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Definition at line 49 of file animaDTIEstimationImageFilter.h.
References anima::DTIEstimationImageFilter< InputPixelScalarType, OutputPixelScalarType >::AddGradientDirection().