ANIMA  4.0
Public Types | Public Member Functions | Protected Member Functions | List of all members
anima::GradientFileReader< GradientType, BValueScalarType > Class Template Reference

#include <animaGradientFileReader.h>

Public Types

typedef std::vector< BValueScalarType > BValueVectorType
 
typedef std::vector< GradientType > GradientVectorType
 

Public Member Functions

std::vector< bool > GetB0Directions ()
 
BValueVectorType & GetBValues ()
 
GradientVectorType & GetGradients ()
 
BValueVectorType & GetGradientStrengths ()
 
unsigned int GetTotalNumberOfDirections ()
 
 GradientFileReader ()
 
void SetB0ValueThreshold (double thr)
 
void SetBigDelta (double val)
 
void SetBValueBaseString (std::string base)
 
void SetGradientFileName (std::string fName)
 
void SetGradientIndependentNormalization (bool normGrads)
 
void SetModified ()
 
void SetSmallDelta (double val)
 
void Update ()
 
 ~GradientFileReader ()
 

Protected Member Functions

template<class T >
void InitializeEmptyGradient (std::vector< T > &vec)
 
template<class T >
void InitializeEmptyGradient (itk::Point< T, 3 > &vec)
 
template<class T >
void InitializeEmptyGradient (vnl_vector_fixed< T, 3 > &vec)
 
template<class T >
void InitializeEmptyGradient (itk::Vector< T, 3 > &vec)
 

Detailed Description

template<class GradientType = std::vector <double>, class BValueScalarType = double>
class anima::GradientFileReader< GradientType, BValueScalarType >

Definition at line 13 of file animaGradientFileReader.h.

Member Typedef Documentation

◆ BValueVectorType

template<class GradientType = std::vector <double>, class BValueScalarType = double>
typedef std::vector<BValueScalarType> anima::GradientFileReader< GradientType, BValueScalarType >::BValueVectorType

Definition at line 18 of file animaGradientFileReader.h.

◆ GradientVectorType

template<class GradientType = std::vector <double>, class BValueScalarType = double>
typedef std::vector<GradientType> anima::GradientFileReader< GradientType, BValueScalarType >::GradientVectorType

Definition at line 17 of file animaGradientFileReader.h.

Constructor & Destructor Documentation

◆ GradientFileReader()

template<class GradientType , class BValueScalarType >
anima::GradientFileReader< GradientType, BValueScalarType >::GradientFileReader ( )

Definition at line 18 of file animaGradientFileReader.hxx.

References anima::DiffusionBigDelta, anima::DiffusionSmallDelta, and anima::GradientFileReader< GradientType, BValueScalarType >::GetB0Directions().

◆ ~GradientFileReader()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
anima::GradientFileReader< GradientType, BValueScalarType >::~GradientFileReader ( )
inline

Definition at line 21 of file animaGradientFileReader.h.

Member Function Documentation

◆ GetB0Directions()

template<class GradientType , class BValueScalarType >
std::vector< bool > anima::GradientFileReader< GradientType, BValueScalarType >::GetB0Directions ( )

Definition at line 36 of file animaGradientFileReader.hxx.

References anima::GradientFileReader< GradientType, BValueScalarType >::GetGradients().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GradientFileReader(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ GetBValues()

template<class GradientType , class BValueScalarType >
GradientFileReader< GradientType, BValueScalarType >::BValueVectorType & anima::GradientFileReader< GradientType, BValueScalarType >::GetBValues ( )

Definition at line 66 of file animaGradientFileReader.hxx.

References anima::GradientFileReader< GradientType, BValueScalarType >::GetGradientStrengths().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GetGradients(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ GetGradients()

template<class GradientType , class BValueScalarType >
GradientFileReader< GradientType, BValueScalarType >::GradientVectorType & anima::GradientFileReader< GradientType, BValueScalarType >::GetGradients ( )

Definition at line 55 of file animaGradientFileReader.hxx.

References anima::GradientFileReader< GradientType, BValueScalarType >::GetBValues().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GetB0Directions(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ GetGradientStrengths()

template<class GradientType , class BValueScalarType >
GradientFileReader< GradientType, BValueScalarType >::BValueVectorType & anima::GradientFileReader< GradientType, BValueScalarType >::GetGradientStrengths ( )

Definition at line 77 of file animaGradientFileReader.hxx.

References anima::GradientFileReader< GradientType, BValueScalarType >::GetTotalNumberOfDirections().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GetBValues(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ GetTotalNumberOfDirections()

template<class GradientType , class BValueScalarType >
unsigned int anima::GradientFileReader< GradientType, BValueScalarType >::GetTotalNumberOfDirections ( )

Definition at line 88 of file animaGradientFileReader.hxx.

References anima::GradientFileReader< GradientType, BValueScalarType >::Update().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GetGradientStrengths(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ InitializeEmptyGradient() [1/4]

template<class GradientType = std::vector <double>, class BValueScalarType = double>
template<class T >
void anima::GradientFileReader< GradientType, BValueScalarType >::InitializeEmptyGradient ( std::vector< T > &  vec)
inlineprotected

Definition at line 40 of file animaGradientFileReader.h.

◆ InitializeEmptyGradient() [2/4]

template<class GradientType = std::vector <double>, class BValueScalarType = double>
template<class T >
void anima::GradientFileReader< GradientType, BValueScalarType >::InitializeEmptyGradient ( itk::Point< T, 3 > &  vec)
inlineprotected

Definition at line 46 of file animaGradientFileReader.h.

◆ InitializeEmptyGradient() [3/4]

template<class GradientType = std::vector <double>, class BValueScalarType = double>
template<class T >
void anima::GradientFileReader< GradientType, BValueScalarType >::InitializeEmptyGradient ( vnl_vector_fixed< T, 3 > &  vec)
inlineprotected

Definition at line 51 of file animaGradientFileReader.h.

◆ InitializeEmptyGradient() [4/4]

template<class GradientType = std::vector <double>, class BValueScalarType = double>
template<class T >
void anima::GradientFileReader< GradientType, BValueScalarType >::InitializeEmptyGradient ( itk::Vector< T, 3 > &  vec)
inlineprotected

Definition at line 56 of file animaGradientFileReader.h.

◆ SetB0ValueThreshold()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetB0ValueThreshold ( double  thr)
inline

Definition at line 27 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ SetBigDelta()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetBigDelta ( double  val)
inline

Definition at line 26 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ SetBValueBaseString()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetBValueBaseString ( std::string  base)
inline

Definition at line 24 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ SetGradientFileName()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetGradientFileName ( std::string  fName)
inline

Definition at line 23 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

Referenced by applyTransformationToGradients(), convert(), and main().

◆ SetGradientIndependentNormalization()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetGradientIndependentNormalization ( bool  normGrads)
inline

Definition at line 28 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ SetModified()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetModified ( )
inline

Definition at line 29 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::GetB0Directions(), anima::GradientFileReader< GradientType, BValueScalarType >::GetBValues(), anima::GradientFileReader< GradientType, BValueScalarType >::GetGradients(), anima::GradientFileReader< GradientType, BValueScalarType >::GetGradientStrengths(), anima::GradientFileReader< GradientType, BValueScalarType >::GetTotalNumberOfDirections(), and anima::GradientFileReader< GradientType, BValueScalarType >::Update().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::SetB0ValueThreshold(), anima::GradientFileReader< GradientType, BValueScalarType >::SetBigDelta(), anima::GradientFileReader< GradientType, BValueScalarType >::SetBValueBaseString(), anima::GradientFileReader< GradientType, BValueScalarType >::SetGradientFileName(), anima::GradientFileReader< GradientType, BValueScalarType >::SetGradientIndependentNormalization(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetSmallDelta().

◆ SetSmallDelta()

template<class GradientType = std::vector <double>, class BValueScalarType = double>
void anima::GradientFileReader< GradientType, BValueScalarType >::SetSmallDelta ( double  val)
inline

Definition at line 25 of file animaGradientFileReader.h.

References anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

◆ Update()

template<class GradientType , class BValueScalarType >
void anima::GradientFileReader< GradientType, BValueScalarType >::Update ( )

Definition at line 99 of file animaGradientFileReader.hxx.

References anima::ComputeNorm(), anima::GetGradientStrengthFromBValue(), and anima::Normalize().

Referenced by anima::GradientFileReader< GradientType, BValueScalarType >::GetTotalNumberOfDirections(), and anima::GradientFileReader< GradientType, BValueScalarType >::SetModified().

The documentation for this class was generated from the following files:
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