ANIMA  4.0
Public Types | Public Member Functions | Protected Member Functions | List of all members
anima::NonLocalPatchBaseSearcher< ImageType > Class Template Referenceabstract

#include <animaNonLocalPatchBaseSearcher.h>

+ Inheritance diagram for anima::NonLocalPatchBaseSearcher< ImageType >:

Public Types

typedef ImageType::Pointer ImagePointer
 
typedef ImageType::RegionType ImageRegionType
 
typedef ImageType::IndexType IndexType
 
typedef ImageType::PixelType PixelType
 
typedef ImageType::SizeType SizeType
 

Public Member Functions

ImageType * GetComparisonImage (unsigned int index)
 
virtual const std::vector< PixelType > & GetDatabaseSamples () const
 
virtual const std::vector< double > & GetDatabaseWeights () const
 
 itkGetObjectMacro (InputImage, ImageType) void AddComparisonImage(ImageType *arg)
 
 NonLocalPatchBaseSearcher ()
 
void SetInputImage (ImageType *arg)
 
void SetMaxAbsDisp (unsigned int arg)
 
void SetPatchHalfSize (unsigned int arg)
 
void SetSearchStepSize (unsigned int arg)
 
void SetWeightThreshold (double arg)
 
void UpdateAtPosition (const IndexType &dataIndex)
 
virtual ~NonLocalPatchBaseSearcher ()
 

Protected Member Functions

virtual void ComputeComparisonProperties (unsigned int index, ImageRegionType &movingPatch)
 
virtual void ComputeInputProperties (const IndexType &refIndex, ImageRegionType &refPatch)
 
virtual double ComputeWeightValue (unsigned int index, ImageRegionType &refPatch, ImageRegionType &movingPatch)=0
 
virtual bool TestPatchConformity (unsigned int index, const IndexType &refIndex, const IndexType &movingIndex)=0
 

Detailed Description

template<class ImageType>
class anima::NonLocalPatchBaseSearcher< ImageType >

Abstract class for non local patch matching. May be used to search in multiple images if the concrete class does support it. Does not compute weights and samples for central voxels as these would always get a weight of 1. Instead, it is the developer task to implement it in his filter

Definition at line 15 of file animaNonLocalPatchBaseSearcher.h.

Member Typedef Documentation

◆ ImagePointer

template<class ImageType>
typedef ImageType::Pointer anima::NonLocalPatchBaseSearcher< ImageType >::ImagePointer

Definition at line 21 of file animaNonLocalPatchBaseSearcher.h.

◆ ImageRegionType

template<class ImageType>
typedef ImageType::RegionType anima::NonLocalPatchBaseSearcher< ImageType >::ImageRegionType

Definition at line 20 of file animaNonLocalPatchBaseSearcher.h.

◆ IndexType

template<class ImageType>
typedef ImageType::IndexType anima::NonLocalPatchBaseSearcher< ImageType >::IndexType

Definition at line 18 of file animaNonLocalPatchBaseSearcher.h.

◆ PixelType

template<class ImageType>
typedef ImageType::PixelType anima::NonLocalPatchBaseSearcher< ImageType >::PixelType

Definition at line 22 of file animaNonLocalPatchBaseSearcher.h.

◆ SizeType

template<class ImageType>
typedef ImageType::SizeType anima::NonLocalPatchBaseSearcher< ImageType >::SizeType

Definition at line 19 of file animaNonLocalPatchBaseSearcher.h.

Constructor & Destructor Documentation

◆ NonLocalPatchBaseSearcher()

template<class ImageType >
anima::NonLocalPatchBaseSearcher< ImageType >::NonLocalPatchBaseSearcher ( )

Definition at line 12 of file animaNonLocalPatchBaseSearcher.hxx.

◆ ~NonLocalPatchBaseSearcher()

template<class ImageType>
virtual anima::NonLocalPatchBaseSearcher< ImageType >::~NonLocalPatchBaseSearcher ( )
inlinevirtual

Definition at line 25 of file animaNonLocalPatchBaseSearcher.h.

Member Function Documentation

◆ ComputeComparisonProperties()

template<class ImageType>
virtual void anima::NonLocalPatchBaseSearcher< ImageType >::ComputeComparisonProperties ( unsigned int  index,
ImageRegionType &  movingPatch 
)
inlineprotectedvirtual

Definition at line 45 of file animaNonLocalPatchBaseSearcher.h.

◆ ComputeInputProperties()

template<class ImageType>
virtual void anima::NonLocalPatchBaseSearcher< ImageType >::ComputeInputProperties ( const IndexType &  refIndex,
ImageRegionType &  refPatch 
)
inlineprotectedvirtual

Definition at line 44 of file animaNonLocalPatchBaseSearcher.h.

◆ ComputeWeightValue()

template<class ImageType>
virtual double anima::NonLocalPatchBaseSearcher< ImageType >::ComputeWeightValue ( unsigned int  index,
ImageRegionType &  refPatch,
ImageRegionType &  movingPatch 
)
protectedpure virtual

Implemented in anima::NonLocalMeansPatchSearcher< ImageType, DataImageType >, and anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >.

Referenced by anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >::ComputeComparisonProperties().

◆ GetComparisonImage()

template<class ImageType >
ImageType * anima::NonLocalPatchBaseSearcher< ImageType >::GetComparisonImage ( unsigned int  index)

Definition at line 33 of file animaNonLocalPatchBaseSearcher.hxx.

Referenced by anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >::SetInputImage().

◆ GetDatabaseSamples()

template<class ImageType>
virtual const std::vector<PixelType>& anima::NonLocalPatchBaseSearcher< ImageType >::GetDatabaseSamples ( ) const
virtual

Referenced by anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >::ComputeTikhonovPrior().

◆ GetDatabaseWeights()

template<class ImageType>
virtual const std::vector<double>& anima::NonLocalPatchBaseSearcher< ImageType >::GetDatabaseWeights ( ) const
virtual

Referenced by anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >::ComputeTikhonovPrior().

◆ itkGetObjectMacro()

template<class ImageType>
anima::NonLocalPatchBaseSearcher< ImageType >::itkGetObjectMacro ( InputImage  ,
ImageType   
)

Referenced by anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >::SetInputImage().

◆ SetInputImage()

template<class ImageType>
void anima::NonLocalPatchBaseSearcher< ImageType >::SetInputImage ( ImageType *  arg)
inline

Definition at line 32 of file animaNonLocalPatchBaseSearcher.h.

◆ SetMaxAbsDisp()

template<class ImageType>
void anima::NonLocalPatchBaseSearcher< ImageType >::SetMaxAbsDisp ( unsigned int  arg)
inline

Definition at line 29 of file animaNonLocalPatchBaseSearcher.h.

◆ SetPatchHalfSize()

template<class ImageType>
void anima::NonLocalPatchBaseSearcher< ImageType >::SetPatchHalfSize ( unsigned int  arg)
inline

Definition at line 27 of file animaNonLocalPatchBaseSearcher.h.

Referenced by anima::NonLocalMeansImageFilter< TInputImage >::DynamicThreadedGenerateData(), and anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType >::DynamicThreadedGenerateData().

◆ SetSearchStepSize()

template<class ImageType>
void anima::NonLocalPatchBaseSearcher< ImageType >::SetSearchStepSize ( unsigned int  arg)
inline

Definition at line 28 of file animaNonLocalPatchBaseSearcher.h.

◆ SetWeightThreshold()

template<class ImageType>
void anima::NonLocalPatchBaseSearcher< ImageType >::SetWeightThreshold ( double  arg)
inline

Definition at line 30 of file animaNonLocalPatchBaseSearcher.h.

◆ TestPatchConformity()

template<class ImageType>
virtual bool anima::NonLocalPatchBaseSearcher< ImageType >::TestPatchConformity ( unsigned int  index,
const IndexType &  refIndex,
const IndexType &  movingIndex 
)
protectedpure virtual

Implemented in anima::NonLocalMeansPatchSearcher< ImageType, DataImageType >, and anima::NonLocalT2DistributionPatchSearcher< ImageType, DataImageType >.

Referenced by anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >::ComputeComparisonProperties().

◆ UpdateAtPosition()

template<class ImageType >
void anima::NonLocalPatchBaseSearcher< ImageType >::UpdateAtPosition ( const IndexType &  dataIndex)

Definition at line 44 of file animaNonLocalPatchBaseSearcher.hxx.

Referenced by anima::MultiT2RelaxometryEstimationImageFilter< TPixelScalarType >::ComputeTikhonovPrior(), and anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >::SetInputImage().

The documentation for this class was generated from the following files:
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