anima::MCMWeightedAverager Class Reference

Computes a weighted average of input multi-compartment models. The output model is at the same time giving the number and type of output compartments but also its parameters are erased when performing Update to get the result. More...

#include <animaMCMWeightedAverager.h>

Inheritance diagram for anima::MCMWeightedAverager:

Collaboration diagram for anima::MCMWeightedAverager:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
using	EigenAnalysisType = itk::SymmetricEigenAnalysis< vnl_matrix< double >, vnl_diag_matrix< double >, vnl_matrix< double > >
using	LECalculatorPointer = typename LECalculatorType::Pointer
using	LECalculatorType = anima::LogEuclideanTensorCalculator< double >
using	MCMCompartmentPointer = MCMType::BaseCompartmentPointer
using	MCMPointer = MCMType::Pointer
using	MCMType = anima::MultiCompartmentModel
typedef itk::SmartPointer< Self >	Pointer
typedef MCMWeightedAverager	Self
using	SpectralClusterType = anima::SpectralClusteringFilter< double >
typedef itk::LightObject	Superclass

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
MCMPointer &	GetOutputModel ()
unsigned int	GetOutputModelSize ()
MCMPointer &	GetUntouchedOutputModel ()
void	ResetNumberOfOutputDirectionalCompartments ()
void	SetInputModels (std::vector< MCMPointer > &models)
void	SetInputWeights (std::vector< double > &weights)
void	SetNumberOfOutputDirectionalCompartments (unsigned int val)
void	SetOutputModel (MCMType *model)
void	SetUpToDate (bool val)
void	Update ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
virtual void	ComputeNonTensorDistanceMatrix ()
virtual void	ComputeOutputNonTensorModel ()
void	ComputeOutputTensorCompatibleModel ()
void	ComputeTensorDistanceMatrix ()
	MCMWeightedAverager ()
	~MCMWeightedAverager ()

Protected Attributes
vnl_matrix< double >	m_InternalDistanceMatrix
EigenAnalysisType	m_InternalEigenAnalyzer
std::vector< itk::VariableLengthVector< double > >	m_InternalLogTensors
itk::VariableLengthVector< double >	m_InternalOutputVector
std::vector< double >	m_InternalOutputWeights
SpectralClusterType	m_InternalSpectralCluster
std::vector< std::vector< double > >	m_InternalSpectralMemberships
vnl_diag_matrix< double >	m_InternalWorkEigenValues
vnl_diag_matrix< double >	m_InternalWorkEigenValuesInputSticks
vnl_matrix< double >	m_InternalWorkEigenVectors
vnl_matrix< double >	m_InternalWorkMatrix
LECalculatorPointer	m_leCalculator
std::vector< MCMCompartmentPointer >	m_WorkCompartmentsVector
std::vector< double >	m_WorkCompartmentWeights

Detailed Description

Computes a weighted average of input multi-compartment models. The output model is at the same time giving the number and type of output compartments but also its parameters are erased when performing Update to get the result.

Definition at line 24 of file animaMCMWeightedAverager.h.

Member Typedef Documentation

ConstPointer

typedef itk::SmartPointer<const Self> anima::MCMWeightedAverager::ConstPointer

Definition at line 30 of file animaMCMWeightedAverager.h.

EigenAnalysisType

using anima::MCMWeightedAverager::EigenAnalysisType = itk::SymmetricEigenAnalysis < vnl_matrix <double>, vnl_diag_matrix<double>, vnl_matrix <double> >

Definition at line 40 of file animaMCMWeightedAverager.h.

LECalculatorPointer

using anima::MCMWeightedAverager::LECalculatorPointer = typename LECalculatorType::Pointer

Definition at line 43 of file animaMCMWeightedAverager.h.

LECalculatorType

using anima::MCMWeightedAverager::LECalculatorType = anima::LogEuclideanTensorCalculator <double>

Definition at line 42 of file animaMCMWeightedAverager.h.

MCMCompartmentPointer

using anima::MCMWeightedAverager::MCMCompartmentPointer = MCMType::BaseCompartmentPointer

Definition at line 38 of file animaMCMWeightedAverager.h.

MCMPointer

using anima::MCMWeightedAverager::MCMPointer = MCMType::Pointer

Definition at line 39 of file animaMCMWeightedAverager.h.

MCMType

using anima::MCMWeightedAverager::MCMType = anima::MultiCompartmentModel

Definition at line 37 of file animaMCMWeightedAverager.h.

Pointer

typedef itk::SmartPointer<Self> anima::MCMWeightedAverager::Pointer

Definition at line 29 of file animaMCMWeightedAverager.h.

Self

typedef MCMWeightedAverager anima::MCMWeightedAverager::Self

Definition at line 27 of file animaMCMWeightedAverager.h.

SpectralClusterType

using anima::MCMWeightedAverager::SpectralClusterType = anima::SpectralClusteringFilter<double>

Definition at line 41 of file animaMCMWeightedAverager.h.

Superclass

typedef itk::LightObject anima::MCMWeightedAverager::Superclass

Definition at line 28 of file animaMCMWeightedAverager.h.

Constructor & Destructor Documentation

MCMWeightedAverager()

anima::MCMWeightedAverager::MCMWeightedAverager ( )

protected

Definition at line 6 of file animaMCMWeightedAverager.cxx.

References anima::FuzzyCMeansFilter< double >::Euclidean, m_InternalEigenAnalyzer, m_InternalSpectralCluster, m_leCalculator, anima::LogEuclideanTensorCalculator< TScalarType >::New(), anima::SpectralClusteringFilter< ScalarType >::SetCMeansAverageType(), anima::SpectralClusteringFilter< ScalarType >::SetMaxIterations(), and anima::SpectralClusteringFilter< ScalarType >::SetVerbose().

~MCMWeightedAverager()

anima::MCMWeightedAverager::~MCMWeightedAverager ( )

inlineprotected

Definition at line 63 of file animaMCMWeightedAverager.h.

Member Function Documentation

ComputeNonTensorDistanceMatrix()

void anima::MCMWeightedAverager::ComputeNonTensorDistanceMatrix ( )

protectedvirtual

Definition at line 202 of file animaMCMWeightedAverager.cxx.

Referenced by Update().

ComputeOutputNonTensorModel()

void anima::MCMWeightedAverager::ComputeOutputNonTensorModel ( )

protectedvirtual

Definition at line 280 of file animaMCMWeightedAverager.cxx.

Referenced by Update().

ComputeOutputTensorCompatibleModel()

void anima::MCMWeightedAverager::ComputeOutputTensorCompatibleModel ( )

protected

Definition at line 207 of file animaMCMWeightedAverager.cxx.

References anima::GetTensorFromVectorRepresentation(), anima::GetVectorRepresentation(), m_InternalEigenAnalyzer, m_InternalLogTensors, m_InternalOutputVector, m_InternalOutputWeights, m_InternalSpectralMemberships, m_InternalWorkEigenValues, m_InternalWorkEigenValuesInputSticks, m_InternalWorkEigenVectors, m_InternalWorkMatrix, m_leCalculator, m_WorkCompartmentsVector, m_WorkCompartmentWeights, anima::RecomposeTensor(), anima::BaseCompartment::SetCompartmentVector(), anima::Stick, anima::Tensor, and anima::Zeppelin.

Referenced by Update().

ComputeTensorDistanceMatrix()

void anima::MCMWeightedAverager::ComputeTensorDistanceMatrix ( )

protected

Definition at line 175 of file animaMCMWeightedAverager.cxx.

References anima::GetVectorRepresentation(), m_InternalDistanceMatrix, m_InternalLogTensors, m_InternalWorkMatrix, m_leCalculator, and m_WorkCompartmentsVector.

Referenced by Update().

CreateAnother()

virtual::itk::LightObject::Pointer anima::MCMWeightedAverager::CreateAnother

(

void

)

const

GetNameOfClass()

virtual const char* anima::MCMWeightedAverager::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

GetOutputModel()

MCMWeightedAverager::MCMPointer & anima::MCMWeightedAverager::GetOutputModel

(

)

Definition at line 38 of file animaMCMWeightedAverager.cxx.

References Update().

GetOutputModelSize()

unsigned int anima::MCMWeightedAverager::GetOutputModelSize

(

)

Definition at line 51 of file animaMCMWeightedAverager.cxx.

GetUntouchedOutputModel()

MCMWeightedAverager::MCMPointer & anima::MCMWeightedAverager::GetUntouchedOutputModel

(

)

Definition at line 46 of file animaMCMWeightedAverager.cxx.

New()

static Pointer anima::MCMWeightedAverager::New ( )

static

Referenced by anima::MCMAverageImagesImageFilter< TPixelType >::CreateAverager().

ResetNumberOfOutputDirectionalCompartments()

void anima::MCMWeightedAverager::ResetNumberOfOutputDirectionalCompartments

(

)

Definition at line 32 of file animaMCMWeightedAverager.cxx.

Referenced by SetOutputModel().

SetInputModels()

void anima::MCMWeightedAverager::SetInputModels ( std::vector< MCMPointer > &  models )

inline

Definition at line 45 of file animaMCMWeightedAverager.h.

SetInputWeights()

void anima::MCMWeightedAverager::SetInputWeights ( std::vector< double > &  weights )

inline

Definition at line 46 of file animaMCMWeightedAverager.h.

SetNumberOfOutputDirectionalCompartments()

void anima::MCMWeightedAverager::SetNumberOfOutputDirectionalCompartments

(

unsigned int

val

)

Definition at line 26 of file animaMCMWeightedAverager.cxx.

SetOutputModel()

void anima::MCMWeightedAverager::SetOutputModel

(

MCMType *

model

)

Definition at line 20 of file animaMCMWeightedAverager.cxx.

References ResetNumberOfOutputDirectionalCompartments().

SetUpToDate()

void anima::MCMWeightedAverager::SetUpToDate ( bool  val )

inline

Definition at line 57 of file animaMCMWeightedAverager.h.

Update()

void anima::MCMWeightedAverager::Update

(

)

Definition at line 59 of file animaMCMWeightedAverager.cxx.

References ComputeNonTensorDistanceMatrix(), ComputeOutputNonTensorModel(), ComputeOutputTensorCompatibleModel(), ComputeTensorDistanceMatrix(), anima::SpectralClusteringFilter< ScalarType >::GetClassesMembership(), anima::SpectralClusteringFilter< ScalarType >::InitializeSigmaFromDistances(), m_InternalDistanceMatrix, m_InternalOutputWeights, m_InternalSpectralCluster, m_InternalSpectralMemberships, m_WorkCompartmentsVector, m_WorkCompartmentWeights, anima::SpectralClusteringFilter< ScalarType >::SetDataWeights(), anima::SpectralClusteringFilter< ScalarType >::SetInputData(), anima::SpectralClusteringFilter< ScalarType >::SetNbClass(), and anima::SpectralClusteringFilter< ScalarType >::Update().

Referenced by GetOutputModel().

Member Data Documentation

m_InternalDistanceMatrix

vnl_matrix<double> anima::MCMWeightedAverager::m_InternalDistanceMatrix

protected

Definition at line 87 of file animaMCMWeightedAverager.h.

Referenced by ComputeTensorDistanceMatrix(), and Update().

m_InternalEigenAnalyzer

EigenAnalysisType anima::MCMWeightedAverager::m_InternalEigenAnalyzer

protected

Definition at line 94 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and MCMWeightedAverager().

m_InternalLogTensors

std::vector< itk::VariableLengthVector <double> > anima::MCMWeightedAverager::m_InternalLogTensors

protected

Definition at line 82 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and ComputeTensorDistanceMatrix().

m_InternalOutputVector

itk::VariableLengthVector<double> anima::MCMWeightedAverager::m_InternalOutputVector

protected

Definition at line 92 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel().

m_InternalOutputWeights

std::vector<double> anima::MCMWeightedAverager::m_InternalOutputWeights

protected

Definition at line 84 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and Update().

m_InternalSpectralCluster

SpectralClusterType anima::MCMWeightedAverager::m_InternalSpectralCluster

protected

Definition at line 96 of file animaMCMWeightedAverager.h.

Referenced by MCMWeightedAverager(), and Update().

m_InternalSpectralMemberships

std::vector< std::vector <double> > anima::MCMWeightedAverager::m_InternalSpectralMemberships

protected

Definition at line 88 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and Update().

m_InternalWorkEigenValues

vnl_diag_matrix<double> anima::MCMWeightedAverager::m_InternalWorkEigenValues

protected

Definition at line 91 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel().

m_InternalWorkEigenValuesInputSticks

vnl_diag_matrix<double> anima::MCMWeightedAverager::m_InternalWorkEigenValuesInputSticks

protected

Definition at line 91 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel().

m_InternalWorkEigenVectors

vnl_matrix<double> anima::MCMWeightedAverager::m_InternalWorkEigenVectors

protected

Definition at line 90 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel().

m_InternalWorkMatrix

vnl_matrix<double> anima::MCMWeightedAverager::m_InternalWorkMatrix

protected

Definition at line 90 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and ComputeTensorDistanceMatrix().

m_leCalculator

LECalculatorPointer anima::MCMWeightedAverager::m_leCalculator

protected

Definition at line 95 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), ComputeTensorDistanceMatrix(), and MCMWeightedAverager().

m_WorkCompartmentsVector

std::vector<MCMCompartmentPointer> anima::MCMWeightedAverager::m_WorkCompartmentsVector

protected

Definition at line 85 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), ComputeTensorDistanceMatrix(), and Update().

m_WorkCompartmentWeights

std::vector<double> anima::MCMWeightedAverager::m_WorkCompartmentWeights

protected

Definition at line 86 of file animaMCMWeightedAverager.h.

Referenced by ComputeOutputTensorCompatibleModel(), and Update().

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The documentation for this class was generated from the following files:

• animaMCMWeightedAverager.h
• animaMCMWeightedAverager.cxx