anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > Class Template Reference

#include <animaTensorGeneralizedCorrelationImageToImageMetric.h>

Inheritance diagram for anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >:

Collaboration diagram for anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::ContinuousIndex< double, ImageDimension >	ContinuousIndexType
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef vnl_matrix< double >	CovarianceType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::InputPointType	InputPointType
using	LECalculatorPointer = LECalculatorType::Pointer
using	LECalculatorType = anima::LogEuclideanTensorCalculator< double >
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef TFixedImage::PixelType	PixelType
typedef itk::SmartPointer< Self >	Pointer
typedef TensorGeneralizedCorrelationImageToImageMetric	Self
typedef anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef itk::VectorImage< TFixedImagePixelType, ImageDimension >	TFixedImage
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension >	TMovingImage
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef FixedImageType::ConstPointer	FixedImageConstPointer
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef itk::SpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType
typedef FixedImageType::RegionType	FixedImageRegionType
typedef itk::VectorImage< TFixedImagePixelType, ImageDimension >	FixedImageType
typedef TransformType::InputPointType	InputPointType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef itk::InterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	InterpolatorType
typedef Superclass::MeasureType	MeasureType
enum	ModelReorientationType
typedef MovingImageType::ConstPointer	MovingImageConstPointer
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef itk::SpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension > ::PixelType	MovingImagePixelType
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension >	MovingImageType
typedef TransformType::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef double	RealType
typedef BaseOrientedModelImageToImageMetric	Self
typedef itk::SingleValuedCostFunction	Superclass
typedef TransformType::JacobianType	TransformJacobianType
typedef TransformType::ParametersType	TransformParametersType
typedef TransformType::Pointer	TransformPointer
typedef itk::Transform< CoordinateRepresentationType, itkGetStaticConstMacro(MovingImageDimension), itkGetStaticConstMacro(FixedImageDimension)>	TransformType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
MeasureType	GetValue (const TransformParametersType &parameters) const ITK_OVERRIDE
void	PreComputeFixedValues ()
virtual void	SetOrientationPenalty (bool _arg)
virtual void	SetVarianceThreshold (double _arg)
Public Member Functions inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const ITK_OVERRIDE
	Should not be used. More...
virtual const FixedImageType *	GetFixedImage () const
virtual const FixedImageMaskType *	GetFixedImageMask () const
virtual const FixedImageRegionType &	GetFixedImageRegion () const
virtual const InterpolatorType *	GetInterpolator () const
virtual ModelReorientationType	GetModelRotation () const
virtual const MovingImageType *	GetMovingImage () const
virtual const MovingImageMaskType *	GetMovingImageMask () const
unsigned int	GetNumberOfParameters (void) const ITK_OVERRIDE
virtual const unsigned long &	GetNumberOfPixelsCounted () const
virtual const TransformType *	GetTransform () const
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const ITK_OVERRIDE
virtual void	Initialize ()
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual void	SetFixedImageMask (FixedImageMaskType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedImageRegion (FixedImageRegionType _arg)
virtual void	SetInterpolator (InterpolatorType *_arg)
virtual void	SetModelRotation (ModelReorientationType _arg)
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual void	SetMovingImageMask (MovingImageMaskType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	PrintSelf (std::ostream &os, itk::Indent indent) const ITK_OVERRIDE
	TensorGeneralizedCorrelationImageToImageMetric ()
virtual	~TensorGeneralizedCorrelationImageToImageMetric ()
Protected Member Functions inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
	BaseOrientedModelImageToImageMetric ()
void	PrintSelf (std::ostream &os, itk::Indent indent) const ITK_OVERRIDE
virtual	~BaseOrientedModelImageToImageMetric ()

Additional Inherited Members
Static Public Attributes inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
static const unsigned int	FixedImageDimension
static const unsigned int	MovingImageDimension
Protected Attributes inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
FixedImageConstPointer	m_FixedImage
FixedImageMaskConstPointer	m_FixedImageMask
InterpolatorPointer	m_Interpolator
MovingImageConstPointer	m_MovingImage
MovingImageMaskConstPointer	m_MovingImageMask
unsigned long	m_NumberOfPixelsCounted
vnl_matrix< double >	m_OrientationMatrix
TransformPointer	m_Transform

Detailed Description

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>
class anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >

Definition at line 13 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

Member Typedef Documentation

ConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::SmartPointer<const Self> anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::ConstPointer

Definition at line 25 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

ContinuousIndexType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::ContinuousIndex<double, ImageDimension> anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::ContinuousIndexType

Definition at line 42 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

CoordinateRepresentationType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::CoordinateRepresentationType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::CoordinateRepresentationType

Definition at line 44 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

CovarianceType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef vnl_matrix<double> anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::CovarianceType

Definition at line 35 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

FixedImageConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::FixedImageConstPointer anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::FixedImageConstPointer

Definition at line 49 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

FixedImageType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::FixedImageType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::FixedImageType

Definition at line 47 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

InputPointType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::InputPointType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::InputPointType

Definition at line 41 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

LECalculatorPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

using anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::LECalculatorPointer = LECalculatorType::Pointer

Definition at line 53 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

LECalculatorType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

using anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::LECalculatorType = anima::LogEuclideanTensorCalculator <double>

Definition at line 52 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

MeasureType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MeasureType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MeasureType

Definition at line 46 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

MovingImageConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MovingImageConstPointer anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MovingImageConstPointer

Definition at line 50 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

MovingImageType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MovingImageType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MovingImageType

Definition at line 48 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

OutputPointType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::OutputPointType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::OutputPointType

Definition at line 40 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

PixelType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef TFixedImage::PixelType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PixelType

Types transferred from the base class

Definition at line 31 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

Pointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::SmartPointer<Self> anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Pointer

Definition at line 24 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

Self

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef TensorGeneralizedCorrelationImageToImageMetric anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Self

Definition at line 22 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

Superclass

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef anima::BaseOrientedModelImageToImageMetric<TFixedImage, TMovingImage > anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Superclass

Definition at line 23 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

TFixedImage

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::VectorImage< TFixedImagePixelType, ImageDimension > anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TFixedImage

Standard class typedefs.

Definition at line 19 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

TMovingImage

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::VectorImage< TMovingImagePixelType, ImageDimension > anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TMovingImage

Definition at line 20 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

TransformParametersType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformParametersType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformParametersType

Definition at line 39 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

TransformPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformPointer anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformPointer

Definition at line 38 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

TransformType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformType

Definition at line 37 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

Constructor & Destructor Documentation

TensorGeneralizedCorrelationImageToImageMetric()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorGeneralizedCorrelationImageToImageMetric ( )

protected

Constructor

Definition at line 15 of file animaTensorGeneralizedCorrelationImageToImageMetric.hxx.

References anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue().

Referenced by anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::~TensorGeneralizedCorrelationImageToImageMetric().

~TensorGeneralizedCorrelationImageToImageMetric()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::~TensorGeneralizedCorrelationImageToImageMetric ( )

inlineprotectedvirtual

Definition at line 65 of file animaTensorGeneralizedCorrelationImageToImageMetric.h.

References anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PrintSelf(), and anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorGeneralizedCorrelationImageToImageMetric().

Member Function Documentation

CreateAnother()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual::itk::LightObject::Pointer anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::CreateAnother

(

void

)

const

GetNameOfClass()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual const char* anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >.

GetValue()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MeasureType anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue

(

const TransformParametersType &

parameters

)

const

Get the value for single valued optimizers.

Get the match Measure

Definition at line 32 of file animaTensorGeneralizedCorrelationImageToImageMetric.hxx.

References anima::ExtractPPDRotationFromJacobianMatrix(), anima::GetTensorFromVectorRepresentation(), anima::GetVectorRepresentation(), anima::ovlScore(), anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PreComputeFixedValues(), and anima::RotateSymmetricMatrix().

Referenced by anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorGeneralizedCorrelationImageToImageMetric().

New()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

static Pointer anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::New ( )

static

Method for creation through the object factory.

PreComputeFixedValues()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

void anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PreComputeFixedValues

(

)

Definition at line 213 of file animaTensorGeneralizedCorrelationImageToImageMetric.hxx.

References anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PrintSelf().

Referenced by anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue().

PrintSelf()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

void anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PrintSelf ( std::ostream &  os, itk::Indent  indent  ) const

protected

Definition at line 277 of file animaTensorGeneralizedCorrelationImageToImageMetric.hxx.

Referenced by anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PreComputeFixedValues(), and anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::~TensorGeneralizedCorrelationImageToImageMetric().

SetOrientationPenalty()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual void anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::SetOrientationPenalty ( bool  _arg )

virtual

SetVarianceThreshold()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual void anima::TensorGeneralizedCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::SetVarianceThreshold ( double  _arg )

virtual

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The documentation for this class was generated from the following files:

• animaTensorGeneralizedCorrelationImageToImageMetric.h
• animaTensorGeneralizedCorrelationImageToImageMetric.hxx