ANIMA  4.0
Public Types | Public Member Functions | Static Public Attributes | Protected Member Functions | List of all members
anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType > Class Template Referenceabstract

#include <animaOrientedModelBaseResampleImageFilter.h>

+ Inheritance diagram for anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >:
+ Collaboration diagram for anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >:

Public Types

typedef itk::SmartPointer< const Self > ConstPointer
 
typedef InterpolatorType::ContinuousIndexType ContinuousIndexType
 
typedef TOutputImage::DirectionType DirectionType
 
typedef GeometryImageType::Pointer GeometryImagePointer
 
typedef itk::Image< unsigned char, itkGetStaticConstMacro(ImageDimension)> GeometryImageType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef TImageType InputImageType
 
typedef InputImageType::IndexType InputIndexType
 
typedef InputImageType::PixelType InputPixelType
 
typedef InputImageType::PointType InputPointType
 
typedef InterpolatorType::Pointer InterpolatorPointer
 
typedef itk::InterpolateImageFunction< InputImageType, TInterpolatorPrecisionType > InterpolatorType
 
typedef TOutputImage::PointType OriginPointType
 
typedef TOutputImage::Pointer OutputImagePointer
 
typedef TOutputImage::RegionType OutputImageRegionType
 
typedef itk::SmartPointer< Self > Pointer
 
typedef InterpolatorType::PointType PointType
 
typedef TOutputImage::RegionType RegionType
 
typedef OrientedModelBaseResampleImageFilter Self
 
typedef TOutputImage::SpacingType SpacingType
 
typedef anima::MaskedImageToImageFilter< TImageType, TImageType > Superclass
 
typedef TImageType TOutputImage
 
typedef TransformType::Pointer TransformPointer
 
typedef itk::Transform< TInterpolatorPrecisionType, itkGetStaticConstMacro(ImageDimension), itkGetStaticConstMacro(ImageDimension)> TransformType
 
- Public Types inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self > ConstPointer
 
typedef Superclass::InputImageRegionType InputImageRegionType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef itk::Image< unsigned char, TImageType ::ImageDimension > MaskImageType
 
typedef MaskImageType::IndexType MaskIndexType
 
typedef MaskImageType::RegionType MaskRegionType
 
typedef MaskImageType::SizeType MaskSizeType
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef itk::SmartPointer< Self > Pointer
 
typedef MaskedImageToImageFilter Self
 
typedef anima::NumberedThreadImageToImageFilter< TImageType, TImageType > Superclass
 
typedef itk::ImageSource< TImageType >::ThreadStruct ThreadStruct
 
- Public Types inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self > ConstPointer
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef itk::SmartPointer< Self > Pointer
 
typedef NumberedThreadImageToImageFilter Self
 
typedef itk::ImageToImageFilter< TImageType, TImageType > Superclass
 
typedef itk::ImageSource< TImageType >::ThreadStruct ThreadStruct
 

Public Member Functions

virtual bool GetFiniteStrainReorientation ()
 
virtual InterpolatorType * GetInterpolator ()
 
virtual const char * GetNameOfClass () const
 
virtual const DirectionType & GetOutputDirection () const
 
virtual const RegionType & GetOutputLargestPossibleRegion () const
 
virtual const OriginPointType & GetOutputOrigin () const
 
virtual const SpacingType & GetOutputSpacing () const
 
 itkGetObjectMacro (Transform, TransformType) virtual void SetInterpolator(InterpolatorPointer _arg)
 
virtual void SetFiniteStrainReorientation (bool _arg)
 
virtual void SetOutputDirection (DirectionType _arg)
 
virtual void SetOutputLargestPossibleRegion (RegionType _arg)
 
virtual void SetOutputOrigin (OriginPointType _arg)
 
virtual void SetOutputSpacing (SpacingType _arg)
 
virtual void SetTransform (TransformType *_arg)
 
- Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual MaskImageType * GetComputationMask ()
 
virtual void SetComputationMask (MaskImagePointer _arg)
 
- Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual OutputImageRegionType GetComputationRegion ()
 
virtual void SetComputationRegion (OutputImageRegionType _arg)
 
virtual void SetNumberOfPointsToProcess (unsigned int _arg)
 

Static Public Attributes

static const unsigned int ImageDimension = InputImageType::ImageDimension
 
- Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static constexpr unsigned int OutputImageDimension
 

Protected Member Functions

virtual void BeforeThreadedGenerateData () ITK_OVERRIDE
 
vnl_matrix< double > ComputeLinearJacobianMatrix ()
 
void ComputeLocalJacobianMatrix (InputIndexType &index, vnl_matrix< double > &reorientationMatrix)
 
virtual void ComputeRotationParametersFromReorientationMatrix (vnl_matrix< double > &reorientationMatrix, vnl_matrix< double > &modelOrientationMatrix)
 
void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
 
virtual void GenerateInputRequestedRegion () ITK_OVERRIDE
 
virtual void GenerateOutputInformation () ITK_OVERRIDE
 
virtual unsigned int GetOutputVectorLength ()
 
virtual void InitializeInterpolator ()
 Initializes the default interpolator, might change in derived classes. More...
 
template<class T >
void InitializeZeroPixel (itk::VariableLengthVector< T > &zeroPixel)
 Utility function to initialize output images pixel to zero for vector images. More...
 
template<class T >
void InitializeZeroPixel (T &zeroPixel)
 Utility function to initialize output images pixel to zero for all images except vector images. More...
 
template<class T >
bool isZero (itk::VariableLengthVector< T > &dataVec)
 
template<class T >
bool isZero (T &data)
 
void LinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)
 
void NonLinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)
 
 OrientedModelBaseResampleImageFilter ()
 
virtual void ReorientInterpolatedModel (const InputPixelType &interpolatedModel, vnl_matrix< double > &modelOrientationMatrix, InputPixelType &orientedModel, itk::ThreadIdType threadId)=0
 Needs to be implemented in sub-classes, does the actual re-orientation of the model. More...
 
virtual ~OrientedModelBaseResampleImageFilter ()
 
- Protected Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual void CheckComputationMask ()
 
void InitializeComputationRegionFromMask ()
 
 MaskedImageToImageFilter ()
 
virtual ~MaskedImageToImageFilter ()
 
- Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual void GenerateData () ITK_OVERRIDE
 
unsigned int GetSafeThreadId ()
 
void IncrementNumberOfProcessedPoints ()
 
void InitializeZeroPixel (TImageType *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
 Utility function to initialize output images pixel to zero for vector images. More...
 
void InitializeZeroPixel (TImageType *, PixelType &zeroPixel)
 Utility function to initialize output images pixel to zero for all images except vector images. More...
 
 NumberedThreadImageToImageFilter ()
 
void SafeReleaseThreadId (unsigned int threadId)
 
virtual void ThreadProcessSlices ()
 
virtual ~NumberedThreadImageToImageFilter ()
 

Additional Inherited Members

- Static Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
static Pointer New ()
 
- Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static Pointer New ()
 
- Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION ThreaderMultiSplitCallback (void *arg)
 

Detailed Description

template<typename TImageType, typename TInterpolatorPrecisionType = double>
class anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >

Definition at line 14 of file animaOrientedModelBaseResampleImageFilter.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef itk::SmartPointer<const Self> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ConstPointer

Definition at line 29 of file animaOrientedModelBaseResampleImageFilter.h.

◆ ContinuousIndexType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InterpolatorType::ContinuousIndexType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ContinuousIndexType

Definition at line 34 of file animaOrientedModelBaseResampleImageFilter.h.

◆ DirectionType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::DirectionType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::DirectionType

Definition at line 66 of file animaOrientedModelBaseResampleImageFilter.h.

◆ GeometryImagePointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef GeometryImageType::Pointer anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GeometryImagePointer

Definition at line 25 of file animaOrientedModelBaseResampleImageFilter.h.

◆ GeometryImageType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef itk::Image<unsigned char, itkGetStaticConstMacro(ImageDimension)> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GeometryImageType

Definition at line 24 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InputImagePointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InputImageType::Pointer anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputImagePointer

Image typedef support

Definition at line 45 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InputImageType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TImageType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputImageType

Definition at line 20 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InputIndexType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InputImageType::IndexType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputIndexType

Definition at line 42 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InputPixelType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InputImageType::PixelType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputPixelType

Definition at line 40 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InputPointType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InputImageType::PointType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputPointType

Definition at line 41 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InterpolatorPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InterpolatorType::Pointer anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InterpolatorPointer

Definition at line 32 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InterpolatorType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef itk::InterpolateImageFunction<InputImageType, TInterpolatorPrecisionType> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InterpolatorType

Definition at line 31 of file animaOrientedModelBaseResampleImageFilter.h.

◆ OriginPointType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::PointType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::OriginPointType

Definition at line 65 of file animaOrientedModelBaseResampleImageFilter.h.

◆ OutputImagePointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::Pointer anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::OutputImagePointer

Definition at line 46 of file animaOrientedModelBaseResampleImageFilter.h.

◆ OutputImageRegionType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::RegionType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::OutputImageRegionType

Definition at line 47 of file animaOrientedModelBaseResampleImageFilter.h.

◆ Pointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef itk::SmartPointer<Self> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Pointer

Definition at line 28 of file animaOrientedModelBaseResampleImageFilter.h.

◆ PointType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef InterpolatorType::PointType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::PointType

Definition at line 35 of file animaOrientedModelBaseResampleImageFilter.h.

◆ RegionType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::RegionType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::RegionType

Definition at line 67 of file animaOrientedModelBaseResampleImageFilter.h.

◆ Self

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef OrientedModelBaseResampleImageFilter anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Self

Standard class typedefs.

Definition at line 19 of file animaOrientedModelBaseResampleImageFilter.h.

◆ SpacingType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TOutputImage::SpacingType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SpacingType

Definition at line 64 of file animaOrientedModelBaseResampleImageFilter.h.

◆ Superclass

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef anima::MaskedImageToImageFilter<TImageType, TImageType> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Superclass

Definition at line 27 of file animaOrientedModelBaseResampleImageFilter.h.

◆ TOutputImage

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TImageType anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::TOutputImage

Definition at line 21 of file animaOrientedModelBaseResampleImageFilter.h.

◆ TransformPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef TransformType::Pointer anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::TransformPointer

Definition at line 53 of file animaOrientedModelBaseResampleImageFilter.h.

◆ TransformType

template<typename TImageType , typename TInterpolatorPrecisionType = double>
typedef itk::Transform<TInterpolatorPrecisionType, itkGetStaticConstMacro(ImageDimension), itkGetStaticConstMacro(ImageDimension)> anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::TransformType

Definition at line 51 of file animaOrientedModelBaseResampleImageFilter.h.

Constructor & Destructor Documentation

◆ OrientedModelBaseResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::OrientedModelBaseResampleImageFilter ( )
inlineprotected

Definition at line 82 of file animaOrientedModelBaseResampleImageFilter.h.

◆ ~OrientedModelBaseResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter ( )
inlineprotectedvirtual

Definition at line 90 of file animaOrientedModelBaseResampleImageFilter.h.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::DynamicThreadedGenerateData(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateInputRequestedRegion(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateOutputInformation(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength().

Member Function Documentation

◆ BeforeThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData ( )
protectedvirtual

Reimplemented from anima::MaskedImageToImageFilter< TImageType, TImageType >.

Reimplemented in anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >, anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >, and anima::TensorResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 70 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::DynamicThreadedGenerateData().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter().

◆ ComputeLinearJacobianMatrix()

template<typename TImageType , typename TInterpolatorPrecisionType >
vnl_matrix< double > anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLinearJacobianMatrix ( )
protected

Compute local re-orientation transformation matrix from linear transform (rotation if finite strain, Jacobian otherwise)

Definition at line 205 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLocalJacobianMatrix().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::NonLinearThreadedGenerateData().

◆ ComputeLocalJacobianMatrix()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLocalJacobianMatrix ( InputIndexType &  index,
vnl_matrix< double > &  reorientationMatrix 
)
protected

Compute local re-orientation transformation matrix from non linear transform (rotation if finite strain, Jacobian otherwise)

Definition at line 240 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeRotationParametersFromReorientationMatrix().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLinearJacobianMatrix(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel().

◆ ComputeRotationParametersFromReorientationMatrix()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeRotationParametersFromReorientationMatrix ( vnl_matrix< double > &  reorientationMatrix,
vnl_matrix< double > &  modelOrientationMatrix 
)
protectedvirtual

For some models / re-orientation schemes, the transform induced Jacobiam matrix needs to be used to get rotation parameters if needed, this method should be overloaded

Definition at line 319 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::ExtractRotationFromJacobianMatrix().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLocalJacobianMatrix(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel().

◆ DynamicThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::DynamicThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread)
protected

Definition at line 92 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::LinearThreadedGenerateData().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter().

◆ GenerateInputRequestedRegion()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateInputRequestedRegion ( )
protectedvirtual

Definition at line 32 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateOutputInformation().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeInterpolator(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter().

◆ GenerateOutputInformation()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateOutputInformation ( void  )
protectedvirtual

Definition at line 45 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateInputRequestedRegion(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter().

◆ GetFiniteStrainReorientation()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual bool anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetFiniteStrainReorientation ( )
virtual

◆ GetInterpolator()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual InterpolatorType* anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetInterpolator ( )
virtual

◆ GetNameOfClass()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual const char* anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from anima::MaskedImageToImageFilter< TImageType, TImageType >.

Reimplemented in anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >, anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >, and anima::TensorResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

◆ GetOutputDirection()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual const DirectionType& anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputDirection ( ) const
virtual

◆ GetOutputLargestPossibleRegion()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual const RegionType& anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputLargestPossibleRegion ( ) const
virtual

◆ GetOutputOrigin()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual const OriginPointType& anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputOrigin ( ) const
virtual

◆ GetOutputSpacing()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual const SpacingType& anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputSpacing ( ) const
virtual

◆ GetOutputVectorLength()

template<typename TImageType , typename TInterpolatorPrecisionType >
unsigned int anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength ( )
protectedvirtual

Reimplemented in anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 59 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateOutputInformation(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~OrientedModelBaseResampleImageFilter().

◆ InitializeInterpolator()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeInterpolator ( )
protectedvirtual

Initializes the default interpolator, might change in derived classes.

Reimplemented in anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 20 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GenerateInputRequestedRegion().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel().

◆ InitializeZeroPixel() [1/2]

template<typename TImageType , typename TInterpolatorPrecisionType = double>
template<class T >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel ( itk::VariableLengthVector< T > &  zeroPixel)
inlineprotected

Utility function to initialize output images pixel to zero for vector images.

Definition at line 122 of file animaOrientedModelBaseResampleImageFilter.h.

◆ InitializeZeroPixel() [2/2]

template<typename TImageType , typename TInterpolatorPrecisionType = double>
template<class T >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel ( T &  zeroPixel)
inlineprotected

Utility function to initialize output images pixel to zero for all images except vector images.

Definition at line 128 of file animaOrientedModelBaseResampleImageFilter.h.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLinearJacobianMatrix(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLocalJacobianMatrix(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeRotationParametersFromReorientationMatrix(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeInterpolator(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::LinearThreadedGenerateData(), anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::NonLinearThreadedGenerateData(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel().

◆ isZero() [1/2]

template<typename TImageType , typename TInterpolatorPrecisionType = double>
template<class T >
bool anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::isZero ( itk::VariableLengthVector< T > &  dataVec)
inlineprotected

Definition at line 101 of file animaOrientedModelBaseResampleImageFilter.h.

◆ isZero() [2/2]

template<typename TImageType , typename TInterpolatorPrecisionType = double>
template<class T >
bool anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::isZero ( T &  data)
inlineprotected

Definition at line 115 of file animaOrientedModelBaseResampleImageFilter.h.

◆ itkGetObjectMacro()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::itkGetObjectMacro ( Transform  ,
TransformType   
)

◆ LinearThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::LinearThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread,
unsigned int  threadId 
)
protected

Definition at line 107 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::NonLinearThreadedGenerateData().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::DynamicThreadedGenerateData(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel().

◆ NonLinearThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >
void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::NonLinearThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread,
unsigned int  threadId 
)
protected

Definition at line 159 of file animaOrientedModelBaseResampleImageFilter.hxx.

References anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ComputeLinearJacobianMatrix().

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel(), and anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::LinearThreadedGenerateData().

◆ ReorientInterpolatedModel()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel ( const InputPixelType &  interpolatedModel,
vnl_matrix< double > &  modelOrientationMatrix,
InputPixelType &  orientedModel,
itk::ThreadIdType  threadId 
)
protectedpure virtual

Needs to be implemented in sub-classes, does the actual re-orientation of the model.

Implemented in anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >, anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >, and anima::TensorResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Referenced by anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeZeroPixel().

◆ SetFiniteStrainReorientation()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetFiniteStrainReorientation ( bool  _arg)
virtual

◆ SetOutputDirection()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetOutputDirection ( DirectionType  _arg)
virtual

◆ SetOutputLargestPossibleRegion()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetOutputLargestPossibleRegion ( RegionType  _arg)
virtual

◆ SetOutputOrigin()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetOutputOrigin ( OriginPointType  _arg)
virtual

Referenced by anima::PyramidImageFilter< TInputImage, TOutputImage >::CreateLevelVectorImage().

◆ SetOutputSpacing()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetOutputSpacing ( SpacingType  _arg)
virtual

◆ SetTransform()

template<typename TImageType , typename TInterpolatorPrecisionType = double>
virtual void anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetTransform ( TransformType *  _arg)
virtual

Member Data Documentation

◆ ImageDimension

template<typename TImageType , typename TInterpolatorPrecisionType = double>
const unsigned int anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ImageDimension = InputImageType::ImageDimension
static

Definition at line 22 of file animaOrientedModelBaseResampleImageFilter.h.

The documentation for this class was generated from the following files:
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