#include <animaMCMResampleImageFilter.h>

Inheritance diagram for anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >:

Collaboration diagram for anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::InputPixelType	InputPixelType

typedef MCModelType::Pointer	MCModelPointer

typedef anima::MultiCompartmentModel	MCModelType

typedef itk::SmartPointer< Self >	Pointer

typedef MCMResampleImageFilter	Self

typedef OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >	Superclass

Public Types inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef InterpolatorType::ContinuousIndexType	ContinuousIndexType

typedef TOutputImage::DirectionType	DirectionType

typedef GeometryImageType::Pointer	GeometryImagePointer

typedef itk::Image< unsigned char, itkGetStaticConstMacro(ImageDimension)>	GeometryImageType

typedef InputImageType::Pointer	InputImagePointer

typedef TImageType	InputImageType

typedef InputImageType::IndexType	InputIndexType

typedef InputImageType::PixelType	InputPixelType

typedef InputImageType::PointType	InputPointType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef itk::InterpolateImageFunction< InputImageType, TInterpolatorPrecisionType >	InterpolatorType

typedef TOutputImage::PointType	OriginPointType

typedef TOutputImage::Pointer	OutputImagePointer

typedef TOutputImage::RegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef InterpolatorType::PointType	PointType

typedef TOutputImage::RegionType	RegionType

typedef OrientedModelBaseResampleImageFilter	Self

typedef TOutputImage::SpacingType	SpacingType

typedef anima::MaskedImageToImageFilter< TImageType, TImageType >	Superclass

typedef TImageType	TOutputImage

typedef TransformType::Pointer	TransformPointer

typedef itk::Transform< TInterpolatorPrecisionType, itkGetStaticConstMacro(ImageDimension), itkGetStaticConstMacro(ImageDimension)>	TransformType

Public Types inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::InputImageRegionType	InputImageRegionType

typedef MaskImageType::Pointer	MaskImagePointer

typedef itk::Image< unsigned char, TImageType ::ImageDimension >	MaskImageType

typedef MaskImageType::IndexType	MaskIndexType

typedef MaskImageType::RegionType	MaskRegionType

typedef MaskImageType::SizeType	MaskSizeType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef MaskedImageToImageFilter	Self

typedef anima::NumberedThreadImageToImageFilter< TImageType, TImageType >	Superclass

typedef itk::ImageSource< TImageType >::ThreadStruct	ThreadStruct

Public Types inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef NumberedThreadImageToImageFilter	Self

typedef itk::ImageToImageFilter< TImageType, TImageType >	Superclass

typedef itk::ImageSource< TImageType >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const char *	GetNameOfClass () const

void	SetReferenceOutputModel (const MCModelPointer &model)
	Sets reference output MCM model, necessary to determine output organization (and rotate) More...

Public Member Functions inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
virtual bool	GetFiniteStrainReorientation ()

virtual InterpolatorType *	GetInterpolator ()

virtual const DirectionType &	GetOutputDirection () const

virtual const RegionType &	GetOutputLargestPossibleRegion () const

virtual const OriginPointType &	GetOutputOrigin () const

virtual const SpacingType &	GetOutputSpacing () const

	itkGetObjectMacro (Transform, TransformType) virtual void SetInterpolator(InterpolatorPointer _arg)

virtual void	SetFiniteStrainReorientation (bool _arg)

virtual void	SetOutputDirection (DirectionType _arg)

virtual void	SetOutputLargestPossibleRegion (RegionType _arg)

virtual void	SetOutputOrigin (OriginPointType _arg)

virtual void	SetOutputSpacing (SpacingType _arg)

virtual void	SetTransform (TransformType *_arg)

Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual MaskImageType *	GetComputationMask ()

virtual void	SetComputationMask (MaskImagePointer _arg)

Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual OutputImageRegionType	GetComputationRegion ()

virtual void	SetComputationRegion (OutputImageRegionType _arg)

virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
static Pointer	New ()

Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = InputImageType::ImageDimension

Static Public Attributes inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
static const unsigned int	ImageDimension = InputImageType::ImageDimension

Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
virtual void	BeforeThreadedGenerateData () ITK_OVERRIDE

virtual unsigned int	GetOutputVectorLength () ITK_OVERRIDE

virtual void	InitializeInterpolator () ITK_OVERRIDE
	Initializes the default interpolator, might change in derived classes. More...

virtual itk::LightObject::Pointer	InternalClone () const ITK_OVERRIDE

	MCMResampleImageFilter ()

virtual void	ReorientInterpolatedModel (const InputPixelType &interpolatedModel, vnl_matrix< double > &modelOrientationMatrix, InputPixelType &orientedModel, itk::ThreadIdType threadId) ITK_OVERRIDE
	Needs to be implemented in sub-classes, does the actual re-orientation of the model. More...

virtual	~MCMResampleImageFilter ()

Protected Member Functions inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
vnl_matrix< double >	ComputeLinearJacobianMatrix ()

void	ComputeLocalJacobianMatrix (InputIndexType &index, vnl_matrix< double > &reorientationMatrix)

virtual void	ComputeRotationParametersFromReorientationMatrix (vnl_matrix< double > &reorientationMatrix, vnl_matrix< double > &modelOrientationMatrix)

void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE

virtual void	GenerateInputRequestedRegion () ITK_OVERRIDE

virtual void	GenerateOutputInformation () ITK_OVERRIDE

template<class T >
void	InitializeZeroPixel (itk::VariableLengthVector< T > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...

template<class T >
void	InitializeZeroPixel (T &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...

template<class T >
bool	isZero (itk::VariableLengthVector< T > &dataVec)

template<class T >
bool	isZero (T &data)

void	LinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)

void	NonLinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)

	OrientedModelBaseResampleImageFilter ()

virtual	~OrientedModelBaseResampleImageFilter ()

Protected Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual void	CheckComputationMask ()

void	InitializeComputationRegionFromMask ()

	MaskedImageToImageFilter ()

virtual	~MaskedImageToImageFilter ()

Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual void	GenerateData () ITK_OVERRIDE

unsigned int	GetSafeThreadId ()

void	IncrementNumberOfProcessedPoints ()

void	InitializeZeroPixel (TImageType *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...

void	InitializeZeroPixel (TImageType *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...

	NumberedThreadImageToImageFilter ()

void	SafeReleaseThreadId (unsigned int threadId)

virtual void	ThreadProcessSlices ()

virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<typename TImageType, typename TInterpolatorPrecisionType = double>
class anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >

Definition at line 10 of file animaMCMResampleImageFilter.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef itk::SmartPointer<const Self> anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ConstPointer

Definition at line 19 of file animaMCMResampleImageFilter.h.

◆ InputImageType

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef Superclass::InputImageType anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputImageType

Definition at line 22 of file animaMCMResampleImageFilter.h.

◆ InputPixelType

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef Superclass::InputPixelType anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputPixelType

Definition at line 21 of file animaMCMResampleImageFilter.h.

◆ MCModelPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef MCModelType::Pointer anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::MCModelPointer

Definition at line 26 of file animaMCMResampleImageFilter.h.

◆ MCModelType

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef anima::MultiCompartmentModel anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::MCModelType

Definition at line 25 of file animaMCMResampleImageFilter.h.

◆ Pointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef itk::SmartPointer<Self> anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Pointer

Definition at line 18 of file animaMCMResampleImageFilter.h.

◆ Self

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef MCMResampleImageFilter anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Self

Standard class typedefs.

Definition at line 15 of file animaMCMResampleImageFilter.h.

◆ Superclass

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef OrientedModelBaseResampleImageFilter<TImageType,TInterpolatorPrecisionType> anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Superclass

Definition at line 17 of file animaMCMResampleImageFilter.h.

Constructor & Destructor Documentation

◆ MCMResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::MCMResampleImageFilter ( )

inlineprotected

Definition at line 38 of file animaMCMResampleImageFilter.h.

◆ ~MCMResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~MCMResampleImageFilter ( )

inlineprotectedvirtual

Definition at line 42 of file animaMCMResampleImageFilter.h.

References anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength(), anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeInterpolator(), anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InternalClone(), and anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel().

Member Function Documentation

◆ BeforeThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >

void anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData ( )

protectedvirtual

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 40 of file animaMCMResampleImageFilter.hxx.

References anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetReferenceOutputModel().

Referenced by anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InternalClone(), and anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~MCMResampleImageFilter().

◆ CreateAnother()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual::itk::LightObject::Pointer anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::CreateAnother ( void ) const

◆ GetNameOfClass()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual const char* anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

◆ GetOutputVectorLength()

template<typename TImageType , typename TInterpolatorPrecisionType >

unsigned int anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength ( )

protectedvirtual

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 13 of file animaMCMResampleImageFilter.hxx.

References anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InternalClone().

Referenced by anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~MCMResampleImageFilter().

◆ InitializeInterpolator()

template<typename TImageType , typename TInterpolatorPrecisionType >

void anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InitializeInterpolator ( )

protectedvirtual

Initializes the default interpolator, might change in derived classes.

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 64 of file animaMCMResampleImageFilter.hxx.

References anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel().

Referenced by anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetReferenceOutputModel(), and anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~MCMResampleImageFilter().

◆ InternalClone()

template<typename TImageType , typename TInterpolatorPrecisionType >

itk::LightObject::Pointer anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InternalClone ( ) const

protectedvirtual

Returns a class copy with important specific variables set, not the greatest implementation especially in terms of interpolators and other internal pointers copy (not done here). Use with extreme caution

Definition at line 25 of file animaMCMResampleImageFilter.hxx.

References anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), and anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::SetReferenceOutputModel().

Referenced by anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetOutputVectorLength(), and anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~MCMResampleImageFilter().

◆ New()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

static Pointer anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::New ( )

static

Method for creation through the object factory.

◆ ReorientInterpolatedModel()

template<typename TImageType , typename TInterpolatorPrecisionType >

void anima::MCMResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel	(	const InputPixelType &	interpolatedModel,
		vnl_matrix< double > &	modelOrientationMatrix,
		InputPixelType &	orientedModel,
		itk::ThreadIdType	threadId
	)