#include <animaODFResampleImageFilter.h>

Inheritance diagram for anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >:

Collaboration diagram for anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::InputPixelType	InputPixelType

typedef itk::SmartPointer< Self >	Pointer

typedef ODFResampleImageFilter	Self

typedef OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >	Superclass

Public Types inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef InterpolatorType::ContinuousIndexType	ContinuousIndexType

typedef TOutputImage::DirectionType	DirectionType

typedef GeometryImageType::Pointer	GeometryImagePointer

typedef itk::Image< unsigned char, itkGetStaticConstMacro(ImageDimension)>	GeometryImageType

typedef InputImageType::Pointer	InputImagePointer

typedef TImageType	InputImageType

typedef InputImageType::IndexType	InputIndexType

typedef InputImageType::PixelType	InputPixelType

typedef InputImageType::PointType	InputPointType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef itk::InterpolateImageFunction< InputImageType, TInterpolatorPrecisionType >	InterpolatorType

typedef TOutputImage::PointType	OriginPointType

typedef TOutputImage::Pointer	OutputImagePointer

typedef TOutputImage::RegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef InterpolatorType::PointType	PointType

typedef TOutputImage::RegionType	RegionType

typedef OrientedModelBaseResampleImageFilter	Self

typedef TOutputImage::SpacingType	SpacingType

typedef anima::MaskedImageToImageFilter< TImageType, TImageType >	Superclass

typedef TImageType	TOutputImage

typedef TransformType::Pointer	TransformPointer

typedef itk::Transform< TInterpolatorPrecisionType, itkGetStaticConstMacro(ImageDimension), itkGetStaticConstMacro(ImageDimension)>	TransformType

Public Types inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::InputImageRegionType	InputImageRegionType

typedef MaskImageType::Pointer	MaskImagePointer

typedef itk::Image< unsigned char, TImageType ::ImageDimension >	MaskImageType

typedef MaskImageType::IndexType	MaskIndexType

typedef MaskImageType::RegionType	MaskRegionType

typedef MaskImageType::SizeType	MaskSizeType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef MaskedImageToImageFilter	Self

typedef anima::NumberedThreadImageToImageFilter< TImageType, TImageType >	Superclass

typedef itk::ImageSource< TImageType >::ThreadStruct	ThreadStruct

Public Types inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef itk::SmartPointer< Self >	Pointer

typedef NumberedThreadImageToImageFilter	Self

typedef itk::ImageToImageFilter< TImageType, TImageType >	Superclass

typedef itk::ImageSource< TImageType >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const char *	GetNameOfClass () const

Public Member Functions inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
virtual bool	GetFiniteStrainReorientation ()

virtual InterpolatorType *	GetInterpolator ()

virtual const DirectionType &	GetOutputDirection () const

virtual const RegionType &	GetOutputLargestPossibleRegion () const

virtual const OriginPointType &	GetOutputOrigin () const

virtual const SpacingType &	GetOutputSpacing () const

	itkGetObjectMacro (Transform, TransformType) virtual void SetInterpolator(InterpolatorPointer _arg)

virtual void	SetFiniteStrainReorientation (bool _arg)

virtual void	SetOutputDirection (DirectionType _arg)

virtual void	SetOutputLargestPossibleRegion (RegionType _arg)

virtual void	SetOutputOrigin (OriginPointType _arg)

virtual void	SetOutputSpacing (SpacingType _arg)

virtual void	SetTransform (TransformType *_arg)

Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual MaskImageType *	GetComputationMask ()

virtual void	SetComputationMask (MaskImagePointer _arg)

Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual OutputImageRegionType	GetComputationRegion ()

virtual void	SetComputationRegion (OutputImageRegionType _arg)

virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
static Pointer	New ()

Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = InputImageType::ImageDimension

Static Public Attributes inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
static const unsigned int	ImageDimension = InputImageType::ImageDimension

Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
virtual void	BeforeThreadedGenerateData () ITK_OVERRIDE

	ODFResampleImageFilter ()

virtual void	ReorientInterpolatedModel (const InputPixelType &interpolatedModel, vnl_matrix< double > &modelOrientationMatrix, InputPixelType &rotatedModel, itk::ThreadIdType threadId) ITK_OVERRIDE
	Needs to be implemented in sub-classes, does the actual re-orientation of the model. More...

virtual	~ODFResampleImageFilter ()

Protected Member Functions inherited from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >
vnl_matrix< double >	ComputeLinearJacobianMatrix ()

void	ComputeLocalJacobianMatrix (InputIndexType &index, vnl_matrix< double > &reorientationMatrix)

virtual void	ComputeRotationParametersFromReorientationMatrix (vnl_matrix< double > &reorientationMatrix, vnl_matrix< double > &modelOrientationMatrix)

void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE

virtual void	GenerateInputRequestedRegion () ITK_OVERRIDE

virtual void	GenerateOutputInformation () ITK_OVERRIDE

virtual unsigned int	GetOutputVectorLength ()

virtual void	InitializeInterpolator ()
	Initializes the default interpolator, might change in derived classes. More...

template<class T >
void	InitializeZeroPixel (itk::VariableLengthVector< T > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...

template<class T >
void	InitializeZeroPixel (T &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...

template<class T >
bool	isZero (itk::VariableLengthVector< T > &dataVec)

template<class T >
bool	isZero (T &data)

void	LinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)

void	NonLinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, unsigned int threadId)

	OrientedModelBaseResampleImageFilter ()

virtual	~OrientedModelBaseResampleImageFilter ()

Protected Member Functions inherited from anima::MaskedImageToImageFilter< TImageType, TImageType >
virtual void	CheckComputationMask ()

void	InitializeComputationRegionFromMask ()

	MaskedImageToImageFilter ()

virtual	~MaskedImageToImageFilter ()

Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
virtual void	GenerateData () ITK_OVERRIDE

unsigned int	GetSafeThreadId ()

void	IncrementNumberOfProcessedPoints ()

void	InitializeZeroPixel (TImageType *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...

void	InitializeZeroPixel (TImageType *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...

	NumberedThreadImageToImageFilter ()

void	SafeReleaseThreadId (unsigned int threadId)

virtual void	ThreadProcessSlices ()

virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TImageType, TImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<typename TImageType, typename TInterpolatorPrecisionType = double>
class anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >

Definition at line 11 of file animaODFResampleImageFilter.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef itk::SmartPointer<const Self> anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ConstPointer

Definition at line 20 of file animaODFResampleImageFilter.h.

◆ InputImageType

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef Superclass::InputImageType anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputImageType

Definition at line 23 of file animaODFResampleImageFilter.h.

◆ InputPixelType

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef Superclass::InputPixelType anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::InputPixelType

Definition at line 22 of file animaODFResampleImageFilter.h.

◆ Pointer

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef itk::SmartPointer<Self> anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Pointer

Definition at line 19 of file animaODFResampleImageFilter.h.

◆ Self

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef ODFResampleImageFilter anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Self

Standard class typedefs.

Definition at line 16 of file animaODFResampleImageFilter.h.

◆ Superclass

template<typename TImageType , typename TInterpolatorPrecisionType = double>

typedef OrientedModelBaseResampleImageFilter<TImageType,TInterpolatorPrecisionType> anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::Superclass

Definition at line 18 of file animaODFResampleImageFilter.h.

Constructor & Destructor Documentation

◆ ODFResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ODFResampleImageFilter ( )

inlineprotected

Definition at line 33 of file animaODFResampleImageFilter.h.

◆ ~ODFResampleImageFilter()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~ODFResampleImageFilter ( )

inlineprotectedvirtual

Definition at line 38 of file animaODFResampleImageFilter.h.

References anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), and anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel().

Member Function Documentation

◆ BeforeThreadedGenerateData()

template<typename TImageType , typename TInterpolatorPrecisionType >

void anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData ( )

protectedvirtual

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 12 of file animaODFResampleImageFilter.hxx.

References anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel().

Referenced by anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~ODFResampleImageFilter().

◆ CreateAnother()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual::itk::LightObject::Pointer anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::CreateAnother ( void ) const

◆ GetNameOfClass()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

virtual const char* anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

◆ New()

template<typename TImageType , typename TInterpolatorPrecisionType = double>

static Pointer anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::New ( )

static

Method for creation through the object factory.

◆ ReorientInterpolatedModel()

template<typename TImageType , typename TInterpolatorPrecisionType >

void anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ReorientInterpolatedModel	(	const InputPixelType &	interpolatedModel,
		vnl_matrix< double > &	modelOrientationMatrix,
		InputPixelType &	orientedModel,
		itk::ThreadIdType	threadId
	)

protectedvirtual

Needs to be implemented in sub-classes, does the actual re-orientation of the model.

Implements anima::OrientedModelBaseResampleImageFilter< TImageType, TInterpolatorPrecisionType >.

Definition at line 32 of file animaODFResampleImageFilter.hxx.

References anima::EstimateLocalODFRotationMatrix(), and anima::GetEulerAnglesFromRotationMatrix().

Referenced by anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::BeforeThreadedGenerateData(), and anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::~ODFResampleImageFilter().

Member Data Documentation

◆ ImageDimension

template<typename TImageType , typename TInterpolatorPrecisionType = double>

const unsigned int anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >::ImageDimension = InputImageType::ImageDimension

static

Definition at line 24 of file animaODFResampleImageFilter.h.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Additional Inherited Members

Detailed Description

template<typename TImageType, typename TInterpolatorPrecisionType = double> class anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >

Member Typedef Documentation

◆ ConstPointer

◆ InputImageType

◆ InputPixelType

◆ Pointer

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ ODFResampleImageFilter()

◆ ~ODFResampleImageFilter()

Member Function Documentation

◆ BeforeThreadedGenerateData()

◆ CreateAnother()

◆ GetNameOfClass()

◆ New()

◆ ReorientInterpolatedModel()

Member Data Documentation

◆ ImageDimension

template<typename TImageType, typename TInterpolatorPrecisionType = double>
class anima::ODFResampleImageFilter< TImageType, TInterpolatorPrecisionType >