ANIMA  4.0
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension > Class Template Reference

#include <animaPyramidalDenseMCMSVFMatchingBridge.h>

+ Inheritance diagram for anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >:
+ Collaboration diagram for anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >:

Public Types

typedef AffineTransformType::Pointer AffineTransformPointer
 
typedef itk::AffineTransform< typename BaseAgregatorType::InternalScalarType, ImageDimension > AffineTransformType
 
typedef BalooSVFTransformAgregator< ImageDimension > BalooAgregatorType
 
typedef BaseTransformAgregator< ImageDimension > BaseAgregatorType
 
typedef BaseBlockMatchRegistrationType::Pointer BaseBlockMatchRegistrationPointer
 
typedef anima::BaseBMRegistrationMethod< InputImageType > BaseBlockMatchRegistrationType
 
typedef BaseTransformType::Pointer BaseTransformPointer
 
typedef MEstimateAgregatorType::BaseOutputTransformType BaseTransformType
 
typedef anima::MCMBlockMatcher< InputImageType > BlockMatcherType
 
typedef itk::SmartPointer< const Self > ConstPointer
 
typedef DisplacementFieldTransformType::Pointer DisplacementFieldTransformPointer
 
typedef rpi::DisplacementFieldTransform< typename BaseAgregatorType::ScalarType, ImageDimension > DisplacementFieldTransformType
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::Pointer InputImagePointer
 
typedef anima::MCMImage< double, ImageDimension > InputImageType
 
typedef InputImageType::InternalPixelType InputInternalPixelType
 
typedef InputImageType::IOPixelType InputPixelType
 
typedef anima::MCMLinearInterpolateImageFunction< InputImageType > InterpolatorType
 
typedef MCModelType::Pointer MCModelPointer
 
typedef anima::MultiCompartmentModel MCModelType
 
typedef DenseSVFTransformAgregator< ImageDimension > MEstimateAgregatorType
 
typedef itk::SmartPointer< Self > Pointer
 
typedef PyramidType::Pointer PyramidPointer
 
typedef anima::PyramidImageFilter< InputImageType, InputImageType > PyramidType
 
typedef PyramidalDenseMCMSVFMatchingBridge Self
 
typedef itk::ProcessObject Superclass
 
typedef VelocityFieldType::PixelType VectorType
 
typedef BaseTransformType::VectorFieldType VelocityFieldType
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
Agregator GetAgregator ()
 
double GetAngleUpperBound ()
 
unsigned int GetBCHCompositionOrder ()
 
unsigned int GetBlockSize ()
 
unsigned int GetBlockSpacing ()
 
double GetElasticSigma ()
 
unsigned int GetExponentiationOrder ()
 
double GetExtrapolationSigma ()
 
double GetFinalRadius ()
 
bool GetFiniteStrainImageReorientation ()
 
unsigned int GetLastPyramidLevel ()
 
unsigned int GetMaximumIterations ()
 
double GetMEstimateConvergenceThreshold ()
 
Metric GetMetric ()
 
MetricOrientationType GetMetricOrientation ()
 
double GetMinimalTransformError ()
 
virtual const char * GetNameOfClass () const
 
double GetNeighborhoodApproximation ()
 
unsigned int GetNumberOfPyramidLevels ()
 
Optimizer GetOptimizer ()
 
unsigned int GetOptimizerMaximumIterations ()
 
double GetOutlierSigma ()
 
InputImagePointer GetOutputImage ()
 
BaseTransformPointer GetOutputTransform ()
 
std::string GetOutputTransformFile ()
 
double GetPercentageKept ()
 
std::string GetResultFile ()
 
double GetScaleUpperBound ()
 
double GetSearchAngleRadius ()
 
double GetSearchRadius ()
 
double GetSearchScaleRadius ()
 
double GetStDevThreshold ()
 
double GetStepSize ()
 
SymmetryType GetSymmetryType ()
 
Transform GetTransform ()
 
double GetTranslateUpperBound ()
 
void SetAgregator (Agregator agregator)
 
void SetAngleUpperBound (double AngleUpperBound)
 
void SetBCHCompositionOrder (unsigned int order)
 
void SetBigDelta (double val)
 
void SetBlockSize (int blockSize)
 
void SetBlockSpacing (unsigned int blockSpacing)
 
void SetElasticSigma (double elasticSigma)
 
void SetExponentiationOrder (unsigned int order)
 
void SetExtrapolationSigma (double extrapolationSigma)
 
void SetFinalRadius (double FinalRadius)
 
void SetFiniteStrainImageReorientation (bool reor)
 
void SetFloatingImage (InputImagePointer FloatingImage)
 
void SetGradientDirections (std::vector< vnl_vector_fixed< double, 3 > > &grads)
 
void SetGradientStrengths (std::vector< double > &val)
 
void SetLastPyramidLevel (unsigned int LastPyramidLevel)
 
void SetMaximumIterations (unsigned int MaximumIterations)
 
void SetMEstimateConvergenceThreshold (double mEstimateConvergenceThreshold)
 
void SetMetric (Metric metric)
 
void SetMetricOrientation (MetricOrientationType metricOr)
 
void SetMinimalTransformError (double MinimalTransformError)
 
void SetNeighborhoodApproximation (double neighborhoodApproximation)
 
void SetNumberOfPyramidLevels (unsigned int NumberOfPyramidLevels)
 
void SetOptimizer (Optimizer optimizer)
 
void SetOptimizerMaximumIterations (unsigned int OptimizerMaximumIterations)
 
void SetOutlierSigma (double outlierSigma)
 
void SetOutputTransformFile (std::string outputTransformFile)
 
void SetPercentageKept (double PercentageKept)
 
void SetReferenceImage (InputImagePointer referenceImage)
 
void SetResultFile (std::string resultFile)
 
void SetScaleUpperBound (double ScaleUpperBound)
 
void SetSearchAngleRadius (double SearchAngleRadius)
 
void SetSearchRadius (double SearchRadius)
 
void SetSearchScaleRadius (double SearchScaleRadius)
 
void SetSmallDelta (double val)
 
void SetStDevThreshold (double StDevThreshold)
 
void SetStepSize (double StepSize)
 
void SetSymmetryType (SymmetryType sym)
 
void SetTransform (Transform transform)
 
void SetTranslateUpperBound (double TranslateUpperBound)
 
void Update () ITK_OVERRIDE
 
void WriteOutputs ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

virtual BlockMatcherType * CreateBlockMatcher ()
 
virtual InterpolatorType * CreateInterpolator (InputImageType *image)
 
 PyramidalDenseMCMSVFMatchingBridge ()
 
void SetupPyramids ()
 
virtual ~PyramidalDenseMCMSVFMatchingBridge ()
 

Detailed Description

template<unsigned int ImageDimension = 3>
class anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >

Definition at line 61 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

Member Typedef Documentation

◆ AffineTransformPointer

template<unsigned int ImageDimension = 3>
typedef AffineTransformType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::AffineTransformPointer

Definition at line 80 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ AffineTransformType

template<unsigned int ImageDimension = 3>
typedef itk::AffineTransform<typename BaseAgregatorType::InternalScalarType,ImageDimension> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::AffineTransformType

Definition at line 79 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BalooAgregatorType

template<unsigned int ImageDimension = 3>
typedef BalooSVFTransformAgregator< ImageDimension > anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BalooAgregatorType

Definition at line 72 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BaseAgregatorType

template<unsigned int ImageDimension = 3>
typedef BaseTransformAgregator< ImageDimension > anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BaseAgregatorType

Definition at line 70 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BaseBlockMatchRegistrationPointer

template<unsigned int ImageDimension = 3>
typedef BaseBlockMatchRegistrationType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationPointer

Definition at line 89 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BaseBlockMatchRegistrationType

template<unsigned int ImageDimension = 3>
typedef anima::BaseBMRegistrationMethod<InputImageType> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationType

Definition at line 88 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BaseTransformPointer

template<unsigned int ImageDimension = 3>
typedef BaseTransformType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BaseTransformPointer

Definition at line 75 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BaseTransformType

template<unsigned int ImageDimension = 3>
typedef MEstimateAgregatorType::BaseOutputTransformType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BaseTransformType

Definition at line 74 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ BlockMatcherType

template<unsigned int ImageDimension = 3>
typedef anima::MCMBlockMatcher<InputImageType> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BlockMatcherType

Definition at line 92 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ ConstPointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<const Self> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::ConstPointer

Definition at line 102 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ DisplacementFieldTransformPointer

template<unsigned int ImageDimension = 3>
typedef DisplacementFieldTransformType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformPointer

Definition at line 83 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ DisplacementFieldTransformType

template<unsigned int ImageDimension = 3>
typedef rpi::DisplacementFieldTransform<typename BaseAgregatorType::ScalarType, ImageDimension> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformType

Definition at line 82 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InputImageConstPointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::ConstPointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InputImageConstPointer

Definition at line 67 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InputImagePointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InputImagePointer

Definition at line 66 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InputImageType

template<unsigned int ImageDimension = 3>
typedef anima::MCMImage<double,ImageDimension> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InputImageType

Definition at line 64 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InputInternalPixelType

template<unsigned int ImageDimension = 3>
typedef InputImageType::InternalPixelType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InputInternalPixelType

Definition at line 68 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InputPixelType

template<unsigned int ImageDimension = 3>
typedef InputImageType::IOPixelType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InputPixelType

Definition at line 65 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ InterpolatorType

template<unsigned int ImageDimension = 3>
typedef anima::MCMLinearInterpolateImageFunction<InputImageType> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InterpolatorType

Definition at line 91 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ MCModelPointer

template<unsigned int ImageDimension = 3>
typedef MCModelType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::MCModelPointer

Definition at line 95 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ MCModelType

template<unsigned int ImageDimension = 3>
typedef anima::MultiCompartmentModel anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::MCModelType

Definition at line 94 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ MEstimateAgregatorType

template<unsigned int ImageDimension = 3>
typedef DenseSVFTransformAgregator< ImageDimension > anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::MEstimateAgregatorType

Definition at line 71 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ Pointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<Self> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Pointer

Definition at line 101 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ PyramidPointer

template<unsigned int ImageDimension = 3>
typedef PyramidType::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::PyramidPointer

Definition at line 86 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ PyramidType

template<unsigned int ImageDimension = 3>
typedef anima::PyramidImageFilter<InputImageType,InputImageType> anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::PyramidType

Definition at line 85 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ Self

template<unsigned int ImageDimension = 3>
typedef PyramidalDenseMCMSVFMatchingBridge anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Self

SmartPointer typedef support

Definition at line 98 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ Superclass

template<unsigned int ImageDimension = 3>
typedef itk::ProcessObject anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Superclass

Definition at line 99 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ VectorType

template<unsigned int ImageDimension = 3>
typedef VelocityFieldType::PixelType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::VectorType

Definition at line 77 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ VelocityFieldType

template<unsigned int ImageDimension = 3>
typedef BaseTransformType::VectorFieldType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::VelocityFieldType

Definition at line 76 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

Constructor & Destructor Documentation

◆ PyramidalDenseMCMSVFMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::PyramidalDenseMCMSVFMatchingBridge ( )
protected

Definition at line 21 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

References Asymmetric, Baloo, Bobyqa, anima::DiffusionBigDelta, anima::DiffusionSmallDelta, FiniteStrain, MCMOneToOneBasicMeanSquares, and Translation.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections().

◆ ~PyramidalDenseMCMSVFMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::~PyramidalDenseMCMSVFMatchingBridge ( )
protectedvirtual

Definition at line 73 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

References anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateInterpolator().

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections().

Member Function Documentation

◆ CreateAnother()

template<unsigned int ImageDimension = 3>
virtual::itk::LightObject::Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateAnother ( void  ) const

◆ CreateBlockMatcher()

template<unsigned int ImageDimension>
PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::BlockMatcherType * anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateBlockMatcher ( )
protectedvirtual

Definition at line 92 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateInterpolator(), and anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections().

◆ CreateInterpolator()

template<unsigned int ImageDimension>
PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::InterpolatorType * anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateInterpolator ( InputImageType *  image)
protectedvirtual

Definition at line 80 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

References anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateBlockMatcher(), and anima::MCMImage< TPixel, VImageDimension >::GetDescriptionModel().

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections(), and anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::~PyramidalDenseMCMSVFMatchingBridge().

◆ GetAgregator()

template<unsigned int ImageDimension = 3>
Agregator anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetAgregator ( )
inline

Definition at line 195 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetAngleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetAngleUpperBound ( )
inline

Definition at line 189 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetBCHCompositionOrder()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetBCHCompositionOrder ( )
inline

Definition at line 213 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetBlockSize()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetBlockSize ( )
inline

Definition at line 135 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetBlockSpacing()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetBlockSpacing ( )
inline

Definition at line 138 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetElasticSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetElasticSigma ( )
inline

Definition at line 201 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetExponentiationOrder()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetExponentiationOrder ( )
inline

Definition at line 216 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetExtrapolationSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetExtrapolationSigma ( )
inline

Definition at line 198 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetFinalRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetFinalRadius ( )
inline

Definition at line 180 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetFiniteStrainImageReorientation()

template<unsigned int ImageDimension = 3>
bool anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetFiniteStrainImageReorientation ( )
inline

Definition at line 156 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetLastPyramidLevel ( )
inline

Definition at line 222 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetMaximumIterations ( )
inline

Definition at line 162 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetMEstimateConvergenceThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetMEstimateConvergenceThreshold ( )
inline

Definition at line 207 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetMetric()

template<unsigned int ImageDimension = 3>
Metric anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetMetric ( )
inline

Definition at line 150 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetMetricOrientation()

template<unsigned int ImageDimension = 3>
MetricOrientationType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetMetricOrientation ( )
inline

Definition at line 153 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetMinimalTransformError()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetMinimalTransformError ( )
inline

Definition at line 165 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetNameOfClass()

template<unsigned int ImageDimension = 3>
virtual const char* anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetNameOfClass ( ) const
virtual

◆ GetNeighborhoodApproximation()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetNeighborhoodApproximation ( )
inline

Definition at line 210 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetNumberOfPyramidLevels ( )
inline

Definition at line 219 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOptimizer()

template<unsigned int ImageDimension = 3>
Optimizer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOptimizer ( )
inline

Definition at line 159 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOptimizerMaximumIterations ( )
inline

Definition at line 168 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOutlierSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOutlierSigma ( )
inline

Definition at line 204 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOutputImage()

template<unsigned int ImageDimension = 3>
InputImagePointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOutputImage ( )
inline

Definition at line 118 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOutputTransform()

template<unsigned int ImageDimension = 3>
BaseTransformPointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOutputTransform ( )
inline

Getter for transform

Definition at line 123 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetOutputTransformFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetOutputTransformFile ( )
inline

Definition at line 132 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetPercentageKept()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetPercentageKept ( )
inline

Definition at line 225 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetResultFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetResultFile ( )
inline

Setter/Getter for parameters

Definition at line 129 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetScaleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetScaleUpperBound ( )
inline

Definition at line 192 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetSearchAngleRadius ( )
inline

Definition at line 174 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetSearchRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetSearchRadius ( )
inline

Definition at line 171 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetSearchScaleRadius ( )
inline

Definition at line 177 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetStDevThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetStDevThreshold ( )
inline

Definition at line 141 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetStepSize()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetStepSize ( )
inline

Definition at line 183 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetSymmetryType()

template<unsigned int ImageDimension = 3>
SymmetryType anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetSymmetryType ( )
inline

Definition at line 144 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetTransform()

template<unsigned int ImageDimension = 3>
Transform anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetTransform ( )
inline

Definition at line 147 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ GetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::GetTranslateUpperBound ( )
inline

Definition at line 186 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ New()

template<unsigned int ImageDimension = 3>
static Pointer anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::New ( )
static

◆ SetAgregator()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetAgregator ( Agregator  agregator)
inline

Definition at line 196 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetAngleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetAngleUpperBound ( double  AngleUpperBound)
inline

Definition at line 190 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetBCHCompositionOrder()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetBCHCompositionOrder ( unsigned int  order)
inline

Definition at line 214 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetBigDelta()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetBigDelta ( double  val)
inline

Definition at line 229 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetBlockSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetBlockSize ( int  blockSize)
inline

Definition at line 136 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetBlockSpacing()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetBlockSpacing ( unsigned int  blockSpacing)
inline

Definition at line 139 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetElasticSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetElasticSigma ( double  elasticSigma)
inline

Definition at line 202 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetExponentiationOrder()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetExponentiationOrder ( unsigned int  order)
inline

Definition at line 217 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetExtrapolationSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetExtrapolationSigma ( double  extrapolationSigma)
inline

Definition at line 199 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetFinalRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetFinalRadius ( double  FinalRadius)
inline

Definition at line 181 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetFiniteStrainImageReorientation()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetFiniteStrainImageReorientation ( bool  reor)
inline

Definition at line 157 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetFloatingImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetFloatingImage ( InputImagePointer  FloatingImage)
inline

Definition at line 116 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetGradientDirections()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections ( std::vector< vnl_vector_fixed< double, 3 > > &  grads)
inline

Definition at line 232 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

References anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateBlockMatcher(), anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::CreateInterpolator(), anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::PyramidalDenseMCMSVFMatchingBridge(), anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetupPyramids(), and anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::~PyramidalDenseMCMSVFMatchingBridge().

◆ SetGradientStrengths()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientStrengths ( std::vector< double > &  val)
inline

Definition at line 230 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetLastPyramidLevel ( unsigned int  LastPyramidLevel)
inline

Definition at line 223 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetMaximumIterations ( unsigned int  MaximumIterations)
inline

Definition at line 163 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetMEstimateConvergenceThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetMEstimateConvergenceThreshold ( double  mEstimateConvergenceThreshold)
inline

Definition at line 208 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetMetric()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetMetric ( Metric  metric)
inline

Definition at line 151 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetMetricOrientation()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetMetricOrientation ( MetricOrientationType  metricOr)
inline

Definition at line 154 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetMinimalTransformError()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetMinimalTransformError ( double  MinimalTransformError)
inline

Definition at line 166 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetNeighborhoodApproximation()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetNeighborhoodApproximation ( double  neighborhoodApproximation)
inline

Definition at line 211 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetNumberOfPyramidLevels ( unsigned int  NumberOfPyramidLevels)
inline

Definition at line 220 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetOptimizer()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetOptimizer ( Optimizer  optimizer)
inline

Definition at line 160 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetOptimizerMaximumIterations ( unsigned int  OptimizerMaximumIterations)
inline

Definition at line 169 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetOutlierSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetOutlierSigma ( double  outlierSigma)
inline

Definition at line 205 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetOutputTransformFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetOutputTransformFile ( std::string  outputTransformFile)
inline

Definition at line 133 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetPercentageKept()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetPercentageKept ( double  PercentageKept)
inline

Definition at line 226 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetReferenceImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetReferenceImage ( InputImagePointer  referenceImage)
inline

Setter for images

Definition at line 115 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetResultFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetResultFile ( std::string  resultFile)
inline

Definition at line 130 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetScaleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetScaleUpperBound ( double  ScaleUpperBound)
inline

Definition at line 193 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetSearchAngleRadius ( double  SearchAngleRadius)
inline

Definition at line 175 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetSearchRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetSearchRadius ( double  SearchRadius)
inline

Definition at line 172 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetSearchScaleRadius ( double  SearchScaleRadius)
inline

Definition at line 178 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetSmallDelta()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetSmallDelta ( double  val)
inline

Definition at line 228 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetStDevThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetStDevThreshold ( double  StDevThreshold)
inline

Definition at line 142 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetStepSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetStepSize ( double  StepSize)
inline

Definition at line 184 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetSymmetryType()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetSymmetryType ( SymmetryType  sym)
inline

Definition at line 145 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetTransform()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetTransform ( Transform  transform)
inline

Definition at line 148 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetTranslateUpperBound ( double  TranslateUpperBound)
inline

Definition at line 187 of file animaPyramidalDenseMCMSVFMatchingBridge.h.

◆ SetupPyramids()

template<unsigned int ImageDimension>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetupPyramids ( )
protected

Definition at line 494 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::SetGradientDirections().

◆ Update()

template<unsigned int ImageDimension>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update ( )

Definition at line 100 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

References Affine, Asymmetric, Bobyqa, Exhaustive, FiniteStrain, anima::GetSVFExponential(), Kissing, MCMBasicMeanSquares, MCMCorrelation, MCMMeanSquares, MCMOneToOneBasicMeanSquares, MSmoother, MTCorrelation, None, PPD, Rigid, anima::BaseAffineBlockMatcher< TInputImageType >::SetAngleMax(), anima::MCMBlockMatcher< TInputImageType >::SetBigDelta(), anima::BaseBlockMatcher< TInputImageType >::SetBlockPercentageKept(), anima::BaseBlockMatcher< TInputImageType >::SetBlockSize(), anima::BaseBlockMatcher< TInputImageType >::SetBlockSpacing(), anima::BaseAffineBlockMatcher< TInputImageType >::SetBlockTransformType(), anima::BaseBlockMatcher< TInputImageType >::SetBlockVarianceThreshold(), anima::DenseSVFTransformAgregator< NDimensions >::SetDistanceBoundary(), anima::BalooSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::DenseSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::BaseBlockMatcher< TInputImageType >::SetFinalRadius(), anima::BalooSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::DenseSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections(), anima::MCMBlockMatcher< TInputImageType >::SetGradientStrengths(), anima::DenseSVFTransformAgregator< NDimensions >::SetMEstimateConvergenceThreshold(), anima::MCMBlockMatcher< TInputImageType >::SetModelRotationType(), anima::DenseSVFTransformAgregator< NDimensions >::SetNeighborhoodHalfSize(), anima::DenseSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::BalooSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::BaseBlockMatcher< TInputImageType >::SetNumberOfWorkUnits(), anima::BaseBlockMatcher< TInputImageType >::SetOptimizerMaximumIterations(), anima::BaseBlockMatcher< TInputImageType >::SetOptimizerType(), anima::DenseSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BalooSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BaseTransformAgregator< NDimensions >::SetOutputTransformType(), anima::BaseAffineBlockMatcher< TInputImageType >::SetScaleMax(), anima::BaseAffineBlockMatcher< TInputImageType >::SetSearchAngleRadius(), anima::BaseBlockMatcher< TInputImageType >::SetSearchRadius(), anima::BaseAffineBlockMatcher< TInputImageType >::SetSearchScaleRadius(), anima::MCMBlockMatcher< TInputImageType >::SetSimilarityType(), anima::MCMBlockMatcher< TInputImageType >::SetSmallDelta(), anima::BaseBlockMatcher< TInputImageType >::SetStepSize(), anima::BaseAffineBlockMatcher< TInputImageType >::SetTranslateMax(), Symmetric, and Translation.

◆ WriteOutputs()

template<unsigned int ImageDimension>
void anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::WriteOutputs ( )

Definition at line 475 of file animaPyramidalDenseMCMSVFMatchingBridge.hxx.

References anima::MCMFileWriter< PixelType, ImageDimension >::SetFileName(), anima::MCMFileWriter< PixelType, ImageDimension >::SetInputImage(), and anima::MCMFileWriter< PixelType, ImageDimension >::Update().

The documentation for this class was generated from the following files:
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