#include <animaMCMBlockMatcher.h>

Inheritance diagram for anima::MCMBlockMatcher< TInputImageType >:

Collaboration diagram for anima::MCMBlockMatcher< TInputImageType >:

Public Types
typedef Superclass::AgregatorType	AgregatorType

typedef Superclass::BaseInputTransformPointer	BaseInputTransformPointer

typedef Superclass::InputImageType	InputImageType

typedef anima::MCMLinearInterpolateImageFunction< InputImageType, double >	MCMInterpolatorType

typedef MCModelType::Pointer	MCModelPointer

typedef anima::MultiCompartmentModel	MCModelType

typedef Superclass::MetricPointer	MetricPointer

enum	ModelRotationType { None = 0, FiniteStrain, PPD }

typedef Superclass::OptimizerPointer	OptimizerPointer

typedef Superclass::PointType	PointType

enum	SimilarityDefinition { MCMBasicMeanSquares = 0, MCMOneToOneBasicMeanSquares, MCMMeanSquares, MTCorrelation, MCMCorrelation }

typedef BaseAffineBlockMatcher< TInputImageType >	Superclass

Public Types inherited from anima::BaseAffineBlockMatcher< TInputImageType >
typedef Superclass::AgregatorType	AgregatorType

typedef Superclass::BaseInputTransformPointer	BaseInputTransformPointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::MetricPointer	MetricPointer

typedef Superclass::OptimizerPointer	OptimizerPointer

typedef Superclass::PointType	PointType

typedef BaseBlockMatcher< TInputImageType >	Superclass

enum	TransformDefinition { Translation = 0, Rigid, Affine, Directional_Affine }

Public Types inherited from anima::BaseBlockMatcher< TInputImageType >
typedef anima::BaseTransformAgregator< TInputImageType::ImageDimension >	AgregatorType

typedef BaseInputTransformType::Pointer	BaseInputTransformPointer

typedef AgregatorType::BaseInputTransformType	BaseInputTransformType

typedef InputImageType::RegionType	ImageRegionType

typedef InputImageType::Pointer	InputImagePointer

typedef TInputImageType	InputImageType

typedef AgregatorType::InternalScalarType	InternalScalarType

typedef MaskImageType::Pointer	MaskImagePointer

typedef itk::Image< unsigned char, TInputImageType::ImageDimension >	MaskImageType

typedef MetricType::Pointer	MetricPointer

typedef itk::SingleValuedCostFunction	MetricType

enum	OptimizerDefinition { Exhaustive = 0, Bobyqa }

typedef OptimizerType::Pointer	OptimizerPointer

typedef itk::SingleValuedNonLinearOptimizer	OptimizerType

typedef InputImageType::PointType	PointType

typedef BaseBlockMatcher	Self

Public Member Functions
bool	GetMaximizedMetric ()

	MCMBlockMatcher ()

void	SetBigDelta (double val)

void	SetGradientDirections (std::vector< vnl_vector_fixed< double, 3 > > &grads)

void	SetGradientStrengths (std::vector< double > &val)

void	SetModelRotationType (ModelRotationType val)

void	SetSimilarityType (SimilarityDefinition val)

void	SetSmallDelta (double val)

virtual	~MCMBlockMatcher ()

Public Member Functions inherited from anima::BaseAffineBlockMatcher< TInputImageType >
	BaseAffineBlockMatcher ()

AgregatorType::TRANSFORM_TYPE	GetAgregatorInputTransformType ()

TransformDefinition &	GetBlockTransformType ()

void	SetAffineDirection (unsigned int val)

void	SetAngleMax (double val)

void	SetBlockTransformType (TransformDefinition val)

void	SetScaleMax (double val)

void	SetSearchAngleRadius (double val)

void	SetSearchScaleRadius (double val)

void	SetTranslateMax (double val)

virtual	~BaseAffineBlockMatcher ()

Public Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
	BaseBlockMatcher ()

MaskImagePointer &	GetBlockGenerationMask ()

double	GetBlockPercentageKept ()

std::vector< PointType > &	GetBlockPositions ()

ImageRegionType &	GetBlockRegion (unsigned int i)

std::vector< ImageRegionType > &	GetBlockRegions ()

unsigned int	GetBlockSize ()

unsigned int	GetBlockSpacing ()

BaseInputTransformPointer &	GetBlockTransformPointer (unsigned int i)

std::vector< BaseInputTransformPointer > &	GetBlockTransformPointers ()

double	GetBlockVarianceThreshold ()

const std::vector< double > &	GetBlockWeights ()

InputImagePointer &	GetMovingImage ()

unsigned int	GetNumberOfWorkUnits ()

OptimizerDefinition	GetOptimizerType ()

InputImagePointer &	GetReferenceImage ()

double	GetSearchRadius ()

bool	GetVerbose ()

void	SetBlockGenerationMask (MaskImageType *image)

void	SetBlockPercentageKept (double val)

void	SetBlockSize (unsigned int val)

void	SetBlockSpacing (unsigned int val)

void	SetBlockVarianceThreshold (double val)

void	SetFinalRadius (double val)

void	SetForceComputeBlocks (bool val)

void	SetMovingImage (InputImageType *image)

void	SetNumberOfWorkUnits (unsigned int val)

void	SetOptimizerMaximumIterations (unsigned int val)

void	SetOptimizerType (OptimizerDefinition val)

void	SetReferenceImage (InputImageType *image)

void	SetSearchRadius (double val)

void	SetStepSize (double val)

void	SetVerbose (bool value)

void	Update ()

virtual	~BaseBlockMatcher ()

Protected Member Functions
virtual void	BlockMatchingSetup (MetricPointer &metric, unsigned int block)

virtual double	ComputeBlockWeight (double val, unsigned int block)

virtual MCMInterpolatorType *	CreateInterpolator ()

void	InitializeBlocks ()

virtual MetricPointer	SetupMetric ()

Protected Member Functions inherited from anima::BaseAffineBlockMatcher< TInputImageType >
virtual void	BlockMatchingSetup (MetricPointer &metric, unsigned int block)

virtual BaseInputTransformPointer	GetNewBlockTransform (PointType &blockCenter)

virtual void	TransformDependantOptimizerSetup (OptimizerPointer &optimizer)

Protected Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
void	BlockMatch (unsigned int startIndex, unsigned int endIndex)

void	ProcessBlockMatch ()

void	SetBlockPositions (std::vector< PointType > &val)

void	SetBlockRegions (std::vector< ImageRegionType > &val)

void	SetBlockWeights (std::vector< double > &val)

virtual OptimizerPointer	SetupOptimizer ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreadedMatching (void *arg)

Detailed Description

template<typename TInputImageType>
class anima::MCMBlockMatcher< TInputImageType >

Definition at line 11 of file animaMCMBlockMatcher.h.

Member Typedef Documentation

◆ AgregatorType

template<typename TInputImageType>

typedef Superclass::AgregatorType anima::MCMBlockMatcher< TInputImageType >::AgregatorType

Definition at line 36 of file animaMCMBlockMatcher.h.

◆ BaseInputTransformPointer

template<typename TInputImageType>

typedef Superclass::BaseInputTransformPointer anima::MCMBlockMatcher< TInputImageType >::BaseInputTransformPointer

Definition at line 38 of file animaMCMBlockMatcher.h.

◆ InputImageType

template<typename TInputImageType>

typedef Superclass::InputImageType anima::MCMBlockMatcher< TInputImageType >::InputImageType

Definition at line 34 of file animaMCMBlockMatcher.h.

◆ MCMInterpolatorType

template<typename TInputImageType>

typedef anima::MCMLinearInterpolateImageFunction<InputImageType,double> anima::MCMBlockMatcher< TInputImageType >::MCMInterpolatorType

Definition at line 44 of file animaMCMBlockMatcher.h.

◆ MCModelPointer

template<typename TInputImageType>

typedef MCModelType::Pointer anima::MCMBlockMatcher< TInputImageType >::MCModelPointer

Definition at line 42 of file animaMCMBlockMatcher.h.

◆ MCModelType

template<typename TInputImageType>

typedef anima::MultiCompartmentModel anima::MCMBlockMatcher< TInputImageType >::MCModelType

Definition at line 41 of file animaMCMBlockMatcher.h.

◆ MetricPointer

template<typename TInputImageType>

typedef Superclass::MetricPointer anima::MCMBlockMatcher< TInputImageType >::MetricPointer

Definition at line 37 of file animaMCMBlockMatcher.h.

◆ OptimizerPointer

template<typename TInputImageType>

typedef Superclass::OptimizerPointer anima::MCMBlockMatcher< TInputImageType >::OptimizerPointer

Definition at line 39 of file animaMCMBlockMatcher.h.

◆ PointType

template<typename TInputImageType>

typedef Superclass::PointType anima::MCMBlockMatcher< TInputImageType >::PointType

Definition at line 35 of file animaMCMBlockMatcher.h.

◆ Superclass

template<typename TInputImageType>

typedef BaseAffineBlockMatcher<TInputImageType> anima::MCMBlockMatcher< TInputImageType >::Superclass

Definition at line 33 of file animaMCMBlockMatcher.h.

Member Enumeration Documentation

◆ ModelRotationType

template<typename TInputImageType>

enum anima::MCMBlockMatcher::ModelRotationType

Enumerator
None
FiniteStrain
PPD

Definition at line 26 of file animaMCMBlockMatcher.h.

◆ SimilarityDefinition

template<typename TInputImageType>

enum anima::MCMBlockMatcher::SimilarityDefinition

Enumerator
MCMBasicMeanSquares
MCMOneToOneBasicMeanSquares
MCMMeanSquares
MTCorrelation
MCMCorrelation

Definition at line 17 of file animaMCMBlockMatcher.h.

Constructor & Destructor Documentation

◆ MCMBlockMatcher()

template<typename TInputImageType >

anima::MCMBlockMatcher< TInputImageType >::MCMBlockMatcher ( )

Definition at line 19 of file animaMCMBlockMatcher.hxx.

References anima::DiffusionBigDelta, anima::DiffusionSmallDelta, anima::MCMBlockMatcher< TInputImageType >::GetMaximizedMetric(), and MCMMeanSquares.

◆ ~MCMBlockMatcher()

template<typename TInputImageType>

virtual anima::MCMBlockMatcher< TInputImageType >::~MCMBlockMatcher ( )

inlinevirtual

Definition at line 15 of file animaMCMBlockMatcher.h.

Member Function Documentation

◆ BlockMatchingSetup()

template<typename TInputImageType >

void anima::MCMBlockMatcher< TInputImageType >::BlockMatchingSetup	(	MetricPointer &	metric,
		unsigned int	block
	)

protectedvirtual

Definition at line 177 of file animaMCMBlockMatcher.hxx.

References MCMBasicMeanSquares, MCMCorrelation, MCMMeanSquares, MCMOneToOneBasicMeanSquares, MTCorrelation, and anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion().

Referenced by anima::MCMBlockMatcher< TInputImageType >::ComputeBlockWeight(), and anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections().

◆ ComputeBlockWeight()

template<typename TInputImageType >

double anima::MCMBlockMatcher< TInputImageType >::ComputeBlockWeight	(	double	val,
		unsigned int	block
	)

protectedvirtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 169 of file animaMCMBlockMatcher.hxx.

References anima::MCMBlockMatcher< TInputImageType >::BlockMatchingSetup().

Referenced by anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections(), and anima::MCMBlockMatcher< TInputImageType >::SetupMetric().

◆ CreateInterpolator()

template<typename TInputImageType >

MCMBlockMatcher< TInputImageType >::MCMInterpolatorType * anima::MCMBlockMatcher< TInputImageType >::CreateInterpolator ( )

protectedvirtual

Definition at line 38 of file animaMCMBlockMatcher.hxx.

References anima::MCMBlockMatcher< TInputImageType >::InitializeBlocks().

Referenced by anima::MCMBlockMatcher< TInputImageType >::GetMaximizedMetric(), and anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections().

◆ GetMaximizedMetric()

template<typename TInputImageType >

bool anima::MCMBlockMatcher< TInputImageType >::GetMaximizedMetric ( )

virtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 30 of file animaMCMBlockMatcher.hxx.

References anima::MCMBlockMatcher< TInputImageType >::CreateInterpolator().

Referenced by anima::MCMBlockMatcher< TInputImageType >::MCMBlockMatcher().

◆ InitializeBlocks()

template<typename TInputImageType >

void anima::MCMBlockMatcher< TInputImageType >::InitializeBlocks ( )

protectedvirtual

Reimplemented from anima::BaseBlockMatcher< TInputImageType >.

Definition at line 50 of file animaMCMBlockMatcher.hxx.

References anima::MCMBlockMatcher< TInputImageType >::SetupMetric().

Referenced by anima::MCMBlockMatcher< TInputImageType >::CreateInterpolator(), and anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections().

◆ SetBigDelta()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetBigDelta ( double val )

inline

Definition at line 52 of file animaMCMBlockMatcher.h.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetGradientDirections()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections ( std::vector< vnl_vector_fixed< double, 3 > > & grads )

inline

Definition at line 54 of file animaMCMBlockMatcher.h.

References anima::MCMBlockMatcher< TInputImageType >::BlockMatchingSetup(), anima::MCMBlockMatcher< TInputImageType >::ComputeBlockWeight(), anima::MCMBlockMatcher< TInputImageType >::CreateInterpolator(), anima::MCMBlockMatcher< TInputImageType >::InitializeBlocks(), and anima::MCMBlockMatcher< TInputImageType >::SetupMetric().

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetGradientStrengths()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetGradientStrengths ( std::vector< double > & val )

inline

Definition at line 53 of file animaMCMBlockMatcher.h.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetModelRotationType()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetModelRotationType ( ModelRotationType val )

inline

Definition at line 49 of file animaMCMBlockMatcher.h.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetSimilarityType()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetSimilarityType ( SimilarityDefinition val )

inline

Definition at line 47 of file animaMCMBlockMatcher.h.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetSmallDelta()

template<typename TInputImageType>

void anima::MCMBlockMatcher< TInputImageType >::SetSmallDelta ( double val )

inline

Definition at line 51 of file animaMCMBlockMatcher.h.

Referenced by anima::PyramidalDenseMCMSVFMatchingBridge< ImageDimension >::Update().

◆ SetupMetric()

template<typename TInputImageType >

MCMBlockMatcher< TInputImageType >::MetricPointer anima::MCMBlockMatcher< TInputImageType >::SetupMetric ( )

protectedvirtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 84 of file animaMCMBlockMatcher.hxx.

References anima::MCMBlockMatcher< TInputImageType >::ComputeBlockWeight(), MCMBasicMeanSquares, MCMCorrelation, MCMMeanSquares, MCMOneToOneBasicMeanSquares, MTCorrelation, anima::BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >::SetModelRotation(), and Translation.

Referenced by anima::MCMBlockMatcher< TInputImageType >::InitializeBlocks(), and anima::MCMBlockMatcher< TInputImageType >::SetGradientDirections().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

template<typename TInputImageType> class anima::MCMBlockMatcher< TInputImageType >

Member Typedef Documentation

◆ AgregatorType

◆ BaseInputTransformPointer

◆ InputImageType

◆ MCMInterpolatorType

◆ MCModelPointer

◆ MCModelType

◆ MetricPointer

◆ OptimizerPointer

◆ PointType

◆ Superclass

Member Enumeration Documentation

◆ ModelRotationType

◆ SimilarityDefinition

Constructor & Destructor Documentation

◆ MCMBlockMatcher()

◆ ~MCMBlockMatcher()

Member Function Documentation

◆ BlockMatchingSetup()

◆ ComputeBlockWeight()

◆ CreateInterpolator()

◆ GetMaximizedMetric()

◆ InitializeBlocks()

◆ SetBigDelta()

◆ SetGradientDirections()

◆ SetGradientStrengths()

◆ SetModelRotationType()

◆ SetSimilarityType()

◆ SetSmallDelta()

◆ SetupMetric()

template<typename TInputImageType>
class anima::MCMBlockMatcher< TInputImageType >