anima::SegmentationMeasuresImageFilter< TLabelImage > Class Template Reference

#include <animaSegmentationMeasuresImageFilter.h>

Inheritance diagram for anima::SegmentationMeasuresImageFilter< TLabelImage >:

Collaboration diagram for anima::SegmentationMeasuresImageFilter< TLabelImage >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef TLabelImage::IndexType	IndexType
typedef TLabelImage::ConstPointer	LabelImageConstPointer
typedef TLabelImage::Pointer	LabelImagePointer
typedef TLabelImage	LabelImageType
typedef TLabelImage::PixelType	LabelType
typedef MapType::const_iterator	MapConstIterator
typedef MapType::iterator	MapIterator
typedef std::map< LabelType, SegPerfLabelSetMeasures >	MapType
typedef itk::SmartPointer< Self >	Pointer
typedef itk::NumericTraits< LabelType >::RealType	RealType
typedef TLabelImage::RegionType	RegionType
typedef SegmentationMeasuresImageFilter	Self
typedef TLabelImage::SizeType	SizeType
typedef anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >	Superclass
Public Types inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef NumberedThreadImageToImageFilter	Self
typedef itk::ImageToImageFilter< TLabelImage, TLabelImage >	Superclass
typedef itk::ImageSource< TLabelImage >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
RealType	GetDiceCoefficient ()
RealType	GetDiceCoefficient (LabelType label)
RealType	GetJaccardCoefficient ()
RealType	GetJaccardCoefficient (LabelType label)
MapType	GetLabelSetMeasures ()
RealType	getMeanOverlap ()
RealType	getMeanOverlap (LabelType)
virtual const char *	GetNameOfClass () const
RealType	getNPV ()
RealType	getNPV (LabelType)
RealType	getPPV ()
RealType	getPPV (LabelType)
RealType	getRelativeVolumeError ()
RealType	getRelativeVolumeError (LabelType)
RealType	getSensitivity ()
RealType	getSensitivity (LabelType)
const LabelImageType *	GetSourceImage (void)
RealType	getSpecificity ()
RealType	getSpecificity (LabelType)
const LabelImageType *	GetTargetImage (void)
RealType	getUnionOverlap ()
RealType	getUnionOverlap (LabelType)
void	SetSourceImage (const LabelImageType *image)
void	SetTargetImage (const LabelImageType *image)
Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual OutputImageRegionType	GetComputationRegion ()
virtual void	SetComputationRegion (OutputImageRegionType _arg)
virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TLabelImage::ImageDimension
Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
void	AfterThreadedGenerateData () ITK_OVERRIDE
void	BeforeThreadedGenerateData () ITK_OVERRIDE
void	DynamicThreadedGenerateData (const RegionType &) ITK_OVERRIDE
	SegmentationMeasuresImageFilter ()
	~SegmentationMeasuresImageFilter ()
Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
virtual void	GenerateData () ITK_OVERRIDE
unsigned int	GetSafeThreadId ()
void	IncrementNumberOfProcessedPoints ()
void	InitializeZeroPixel (TLabelImage *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...
void	InitializeZeroPixel (TLabelImage *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...
	NumberedThreadImageToImageFilter ()
void	SafeReleaseThreadId (unsigned int threadId)
virtual void	ThreadProcessSlices ()
virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<typename TLabelImage>
class anima::SegmentationMeasuresImageFilter< TLabelImage >

Definition at line 54 of file animaSegmentationMeasuresImageFilter.h.

Member Typedef Documentation

ConstPointer

template<typename TLabelImage>

typedef itk::SmartPointer<const Self> anima::SegmentationMeasuresImageFilter< TLabelImage >::ConstPointer

Definition at line 61 of file animaSegmentationMeasuresImageFilter.h.

IndexType

template<typename TLabelImage>

typedef TLabelImage::IndexType anima::SegmentationMeasuresImageFilter< TLabelImage >::IndexType

Definition at line 76 of file animaSegmentationMeasuresImageFilter.h.

LabelImageConstPointer

template<typename TLabelImage>

typedef TLabelImage::ConstPointer anima::SegmentationMeasuresImageFilter< TLabelImage >::LabelImageConstPointer

Definition at line 72 of file animaSegmentationMeasuresImageFilter.h.

LabelImagePointer

template<typename TLabelImage>

typedef TLabelImage::Pointer anima::SegmentationMeasuresImageFilter< TLabelImage >::LabelImagePointer

Definition at line 71 of file animaSegmentationMeasuresImageFilter.h.

LabelImageType

template<typename TLabelImage>

typedef TLabelImage anima::SegmentationMeasuresImageFilter< TLabelImage >::LabelImageType

Image related typedefs.

Definition at line 70 of file animaSegmentationMeasuresImageFilter.h.

LabelType

template<typename TLabelImage>

typedef TLabelImage::PixelType anima::SegmentationMeasuresImageFilter< TLabelImage >::LabelType

Definition at line 78 of file animaSegmentationMeasuresImageFilter.h.

MapConstIterator

template<typename TLabelImage>

typedef MapType::const_iterator anima::SegmentationMeasuresImageFilter< TLabelImage >::MapConstIterator

Definition at line 86 of file animaSegmentationMeasuresImageFilter.h.

MapIterator

template<typename TLabelImage>

typedef MapType::iterator anima::SegmentationMeasuresImageFilter< TLabelImage >::MapIterator

Definition at line 85 of file animaSegmentationMeasuresImageFilter.h.

MapType

template<typename TLabelImage>

typedef std::map<LabelType, SegPerfLabelSetMeasures> anima::SegmentationMeasuresImageFilter< TLabelImage >::MapType

Type of the map used to store data per label

Definition at line 84 of file animaSegmentationMeasuresImageFilter.h.

Pointer

template<typename TLabelImage>

typedef itk::SmartPointer<Self> anima::SegmentationMeasuresImageFilter< TLabelImage >::Pointer

Definition at line 60 of file animaSegmentationMeasuresImageFilter.h.

RealType

template<typename TLabelImage>

typedef itk::NumericTraits<LabelType>::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::RealType

Type to use for computations.

Definition at line 81 of file animaSegmentationMeasuresImageFilter.h.

RegionType

template<typename TLabelImage>

typedef TLabelImage::RegionType anima::SegmentationMeasuresImageFilter< TLabelImage >::RegionType

Definition at line 74 of file animaSegmentationMeasuresImageFilter.h.

Self

template<typename TLabelImage>

typedef SegmentationMeasuresImageFilter anima::SegmentationMeasuresImageFilter< TLabelImage >::Self

Standard Self typedef

Definition at line 58 of file animaSegmentationMeasuresImageFilter.h.

SizeType

template<typename TLabelImage>

typedef TLabelImage::SizeType anima::SegmentationMeasuresImageFilter< TLabelImage >::SizeType

Definition at line 75 of file animaSegmentationMeasuresImageFilter.h.

Superclass

template<typename TLabelImage>

typedef anima::NumberedThreadImageToImageFilter<TLabelImage, TLabelImage> anima::SegmentationMeasuresImageFilter< TLabelImage >::Superclass

Definition at line 59 of file animaSegmentationMeasuresImageFilter.h.

Constructor & Destructor Documentation

SegmentationMeasuresImageFilter()

template<typename TLabelImage >

anima::SegmentationMeasuresImageFilter< TLabelImage >::SegmentationMeasuresImageFilter ( )

protected

Definition at line 11 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData().

~SegmentationMeasuresImageFilter()

template<typename TLabelImage>

anima::SegmentationMeasuresImageFilter< TLabelImage >::~SegmentationMeasuresImageFilter ( )

inlineprotected

Definition at line 166 of file animaSegmentationMeasuresImageFilter.h.

Member Function Documentation

AfterThreadedGenerateData()

template<typename TLabelImage >

void anima::SegmentationMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData ( )

protected

Definition at line 48 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::DynamicThreadedGenerateData(), and anima::SegPerfLabelSetMeasures::m_Source.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData().

BeforeThreadedGenerateData()

template<typename TLabelImage >

void anima::SegmentationMeasuresImageFilter< TLabelImage >::BeforeThreadedGenerateData ( )

protectedvirtual

Reimplemented from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >.

Definition at line 20 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData().

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::SegmentationMeasuresImageFilter().

CreateAnother()

template<typename TLabelImage>

virtual::itk::LightObject::Pointer anima::SegmentationMeasuresImageFilter< TLabelImage >::CreateAnother

(

void

)

const

DynamicThreadedGenerateData()

template<typename TLabelImage >

void anima::SegmentationMeasuresImageFilter< TLabelImage >::DynamicThreadedGenerateData ( const RegionType &  outputRegionForThread )

protected

Multi-thread version GenerateData.

Definition at line 80 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getUnionOverlap().

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::AfterThreadedGenerateData().

GetDiceCoefficient() [1/2]

template<typename TLabelImage>

RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( )

inline

Definition at line 149 of file animaSegmentationMeasuresImageFilter.h.

GetDiceCoefficient() [2/2]

template<typename TLabelImage>

RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::GetDiceCoefficient ( LabelType  label )

inline

Definition at line 154 of file animaSegmentationMeasuresImageFilter.h.

GetJaccardCoefficient() [1/2]

template<typename TLabelImage>

RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( )

inline

alternative names

Definition at line 144 of file animaSegmentationMeasuresImageFilter.h.

GetJaccardCoefficient() [2/2]

template<typename TLabelImage>

RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::GetJaccardCoefficient ( LabelType  label )

inline

Definition at line 159 of file animaSegmentationMeasuresImageFilter.h.

GetLabelSetMeasures()

template<typename TLabelImage>

MapType anima::SegmentationMeasuresImageFilter< TLabelImage >::GetLabelSetMeasures ( )

inline

Get the label set measures

Definition at line 116 of file animaSegmentationMeasuresImageFilter.h.

getMeanOverlap() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getMeanOverlap

(

)

Definition at line 172 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::getUnionOverlap().

getMeanOverlap() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getMeanOverlap

(

LabelType

label

)

Definition at line 181 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getSensitivity().

GetNameOfClass()

template<typename TLabelImage>

virtual const char* anima::SegmentationMeasuresImageFilter< TLabelImage >::GetNameOfClass ( ) const

virtual

Runtime information support.

Reimplemented from anima::NumberedThreadImageToImageFilter< TLabelImage, TLabelImage >.

getNPV() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getNPV

(

)

Definition at line 332 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::getPPV().

getNPV() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getNPV

(

LabelType

label

)

Definition at line 371 of file animaSegmentationMeasuresImageFilter.hxx.

getPPV() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getPPV

(

)

Definition at line 292 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::getSpecificity().

getPPV() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getPPV

(

LabelType

label

)

Definition at line 313 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getNPV().

getRelativeVolumeError() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getRelativeVolumeError

(

)

Definition at line 389 of file animaSegmentationMeasuresImageFilter.hxx.

getRelativeVolumeError() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getRelativeVolumeError

(

LabelType

label

)

Definition at line 411 of file animaSegmentationMeasuresImageFilter.hxx.

getSensitivity() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getSensitivity

(

)

tric overlap measuresmeasures over all labels

Definition at line 190 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::getMeanOverlap().

getSensitivity() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getSensitivity

(

LabelType

label

)

measures over individual labels

Definition at line 212 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getSpecificity().

GetSourceImage()

template<typename TLabelImage>

const LabelImageType* anima::SegmentationMeasuresImageFilter< TLabelImage >::GetSourceImage ( void  )

inline

Get the source image.

Definition at line 104 of file animaSegmentationMeasuresImageFilter.h.

getSpecificity() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getSpecificity

(

)

Definition at line 231 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::getSensitivity().

getSpecificity() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getSpecificity

(

LabelType

label

)

Definition at line 273 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getPPV().

GetTargetImage()

template<typename TLabelImage>

const LabelImageType* anima::SegmentationMeasuresImageFilter< TLabelImage >::GetTargetImage ( void  )

inline

Get the target image.

Definition at line 110 of file animaSegmentationMeasuresImageFilter.h.

getUnionOverlap() [1/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getUnionOverlap

(

)

Definition at line 131 of file animaSegmentationMeasuresImageFilter.hxx.

Referenced by anima::SegmentationMeasuresImageFilter< TLabelImage >::DynamicThreadedGenerateData().

getUnionOverlap() [2/2]

template<typename TLabelImage >

SegmentationMeasuresImageFilter< TLabelImage >::RealType anima::SegmentationMeasuresImageFilter< TLabelImage >::getUnionOverlap

(

LabelType

label

)

Definition at line 153 of file animaSegmentationMeasuresImageFilter.hxx.

References anima::SegmentationMeasuresImageFilter< TLabelImage >::getMeanOverlap().

New()

template<typename TLabelImage>

static Pointer anima::SegmentationMeasuresImageFilter< TLabelImage >::New ( )

static

Method for creation through the object factory.

Referenced by anima::SegPerfCAnalyzer::computeHausdorffDist(), anima::SegPerfCAnalyzer::computeITKMeasures(), anima::SegPerfCAnalyzer::computeMeanDist(), and anima::SegPerfCAnalyzer::contourDectection().

SetSourceImage()

template<typename TLabelImage>

void anima::SegmentationMeasuresImageFilter< TLabelImage >::SetSourceImage ( const LabelImageType *  image )

inline

Set the source image.

Definition at line 92 of file animaSegmentationMeasuresImageFilter.h.

SetTargetImage()

template<typename TLabelImage>

void anima::SegmentationMeasuresImageFilter< TLabelImage >::SetTargetImage ( const LabelImageType *  image )

inline

Set the target image.

Definition at line 98 of file animaSegmentationMeasuresImageFilter.h.

Member Data Documentation

ImageDimension

template<typename TLabelImage>

const unsigned int anima::SegmentationMeasuresImageFilter< TLabelImage >::ImageDimension = TLabelImage::ImageDimension

static

Image related typedefs.

Definition at line 89 of file animaSegmentationMeasuresImageFilter.h.

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The documentation for this class was generated from the following files:

• animaSegmentationMeasuresImageFilter.h
• animaSegmentationMeasuresImageFilter.hxx