anima::CheckStructureNeighborFilter< TInput, TMask, TOutput > Class Template Reference

Class removing lesions that are not sufficiently in the white matter. Intensity rules may not be enough to discard false positives, therefore we also use localization information. Considering that MS lesions are typically located in WM, we remove the detected ones that do not sufficiently achieve this condition. This filter take two entries: a lesion mask and a white matter map. More...

#include <animaCheckStructureNeighborFilter.h>

Inheritance diagram for anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >:

Collaboration diagram for anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >:

Public Types
typedef itk::ConnectedComponentImageFilter< InputImageType, ImageTypeInt >	ConnectedComponentFilterType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::GrayscaleDilateImageFilter< ImageTypeInt, ImageTypeInt, StructuringElementType >	DilateFilterType
typedef itk::ImageRegionIterator< ImageTypeInt >	ImageIteratorTypeInt
typedef itk::Image< PixelTypeInt, 3 >	ImageTypeInt
typedef itk::ImageRegionConstIterator< InputImageType >	InputConstIteratorType
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef TInput	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef itk::LabelContourImageFilter< ImageTypeInt, ImageTypeInt >	LabelContourFilterType
typedef itk::ImageRegionConstIterator< MaskImageType >	MaskConstIteratorType
typedef MaskImageType::ConstPointer	MaskImageConstPointer
typedef TMask	MaskImageType
typedef MaskImageType::PixelType	MaskPixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef TOutput	OutputImageType
typedef itk::ImageRegionIterator< OutputImageType >	OutputIteratorType
typedef OutputImageType::PixelType	OutputPixelType
typedef int	PixelTypeInt
typedef itk::SmartPointer< Self >	Pointer
typedef CheckStructureNeighborFilter	Self
typedef itk::BinaryBallStructuringElement< PixelTypeInt, 3 >	StructuringElementType
typedef itk::ImageToImageFilter< TInput, TOutput >	Superclass

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual int	GetLabelToCheck ()
virtual const char *	GetNameOfClass () const
std::string	GetOutputFilename ()
virtual double	GetRatio ()
virtual bool	GetVerbose ()
void	SetInputClassification (const TInput *image)
void	SetInputMap (const TMask *image)
virtual void	SetLabelToCheck (int _arg)
void	SetOutputFilename (std::string filename)
virtual void	SetRatio (double _arg)
void	SetTol (const double tol)
virtual void	SetVerbose (bool _arg)
void	WriteOutputs ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	CheckStructureNeighborFilter ()
void	GenerateData () ITK_OVERRIDE
TInput::ConstPointer	GetInputClassification ()
TMask::ConstPointer	GetInputMap ()
virtual	~CheckStructureNeighborFilter ()

Detailed Description

template<typename TInput, typename TMask, typename TOutput = TInput>
class anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >

Class removing lesions that are not sufficiently in the white matter. Intensity rules may not be enough to discard false positives, therefore we also use localization information. Considering that MS lesions are typically located in WM, we remove the detected ones that do not sufficiently achieve this condition. This filter take two entries: a lesion mask and a white matter map.

Definition at line 25 of file animaCheckStructureNeighborFilter.h.

Member Typedef Documentation

ConnectedComponentFilterType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ConnectedComponentImageFilter<InputImageType,ImageTypeInt> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::ConnectedComponentFilterType

Definition at line 65 of file animaCheckStructureNeighborFilter.h.

ConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::SmartPointer<const Self> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::ConstPointer

Definition at line 33 of file animaCheckStructureNeighborFilter.h.

DilateFilterType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::GrayscaleDilateImageFilter<ImageTypeInt,ImageTypeInt,StructuringElementType> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::DilateFilterType

Definition at line 68 of file animaCheckStructureNeighborFilter.h.

ImageIteratorTypeInt

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ImageRegionIterator<ImageTypeInt> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::ImageIteratorTypeInt

Definition at line 63 of file animaCheckStructureNeighborFilter.h.

ImageTypeInt

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::Image<PixelTypeInt,3> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::ImageTypeInt

Definition at line 62 of file animaCheckStructureNeighborFilter.h.

InputConstIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ImageRegionConstIterator< InputImageType > anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::InputConstIteratorType

Definition at line 47 of file animaCheckStructureNeighborFilter.h.

InputImageConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef InputImageType::ConstPointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::InputImageConstPointer

Definition at line 45 of file animaCheckStructureNeighborFilter.h.

InputImageType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef TInput anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::InputImageType

Image typedef support Type of the input image.

Definition at line 44 of file animaCheckStructureNeighborFilter.h.

InputPixelType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef InputImageType::PixelType anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::InputPixelType

Definition at line 46 of file animaCheckStructureNeighborFilter.h.

LabelContourFilterType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::LabelContourImageFilter<ImageTypeInt,ImageTypeInt> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::LabelContourFilterType

Definition at line 66 of file animaCheckStructureNeighborFilter.h.

MaskConstIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ImageRegionConstIterator< MaskImageType > anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::MaskConstIteratorType

Definition at line 53 of file animaCheckStructureNeighborFilter.h.

MaskImageConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef MaskImageType::ConstPointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::MaskImageConstPointer

Definition at line 51 of file animaCheckStructureNeighborFilter.h.

MaskImageType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef TMask anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::MaskImageType

Type of the map image.

Definition at line 50 of file animaCheckStructureNeighborFilter.h.

MaskPixelType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef MaskImageType::PixelType anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::MaskPixelType

Definition at line 52 of file animaCheckStructureNeighborFilter.h.

OutputImagePointer

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef OutputImageType::Pointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::OutputImagePointer

Definition at line 57 of file animaCheckStructureNeighborFilter.h.

OutputImageRegionType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef Superclass::OutputImageRegionType anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::OutputImageRegionType

Superclass typedefs.

Definition at line 84 of file animaCheckStructureNeighborFilter.h.

OutputImageType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef TOutput anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::OutputImageType

Type of the mask image.

Definition at line 56 of file animaCheckStructureNeighborFilter.h.

OutputIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ImageRegionIterator<OutputImageType> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::OutputIteratorType

Definition at line 59 of file animaCheckStructureNeighborFilter.h.

OutputPixelType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef OutputImageType::PixelType anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::OutputPixelType

Definition at line 58 of file animaCheckStructureNeighborFilter.h.

PixelTypeInt

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef int anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::PixelTypeInt

Definition at line 61 of file animaCheckStructureNeighborFilter.h.

Pointer

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::SmartPointer<Self> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::Pointer

Definition at line 32 of file animaCheckStructureNeighborFilter.h.

Self

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef CheckStructureNeighborFilter anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::Self

Standard class typedefs.

Definition at line 30 of file animaCheckStructureNeighborFilter.h.

StructuringElementType

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::BinaryBallStructuringElement<PixelTypeInt, 3> anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::StructuringElementType

Definition at line 67 of file animaCheckStructureNeighborFilter.h.

Superclass

template<typename TInput , typename TMask , typename TOutput = TInput>

typedef itk::ImageToImageFilter< TInput , TOutput > anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::Superclass

Definition at line 31 of file animaCheckStructureNeighborFilter.h.

Constructor & Destructor Documentation

CheckStructureNeighborFilter()

template<typename TInput , typename TMask , typename TOutput = TInput>

anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::CheckStructureNeighborFilter ( )

inlineprotected

Definition at line 99 of file animaCheckStructureNeighborFilter.h.

~CheckStructureNeighborFilter()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::~CheckStructureNeighborFilter ( )

inlineprotectedvirtual

Definition at line 111 of file animaCheckStructureNeighborFilter.h.

References anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GenerateData(), anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetInputClassification(), and anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetInputMap().

Member Function Documentation

CreateAnother()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual::itk::LightObject::Pointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::CreateAnother

(

void

)

const

GenerateData()

template<typename TInput , typename TMask , typename TOutput >

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GenerateData ( )

protected

Definition at line 48 of file animaCheckStructureNeighborFilter.hxx.

Referenced by anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::WriteOutputs(), and anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::~CheckStructureNeighborFilter().

GetInputClassification()

template<typename TInput , typename TMask , typename TOutput >

TInput::ConstPointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetInputClassification ( )

protected

Definition at line 21 of file animaCheckStructureNeighborFilter.hxx.

Referenced by anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::~CheckStructureNeighborFilter().

GetInputMap()

template<typename TInput , typename TMask , typename TOutput >

TMask::ConstPointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetInputMap ( )

protected

Definition at line 27 of file animaCheckStructureNeighborFilter.hxx.

References anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::WriteOutputs().

Referenced by anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::~CheckStructureNeighborFilter().

GetLabelToCheck()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual int anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetLabelToCheck ( )

virtual

GetNameOfClass()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual const char* anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

GetOutputFilename()

template<typename TInput , typename TMask , typename TOutput = TInput>

std::string anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetOutputFilename ( )

inline

Definition at line 95 of file animaCheckStructureNeighborFilter.h.

GetRatio()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual double anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetRatio ( )

virtual

GetVerbose()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual bool anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetVerbose ( )

virtual

New()

template<typename TInput , typename TMask , typename TOutput = TInput>

static Pointer anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::New ( )

static

Method for creation through the object factory.

SetInputClassification()

template<typename TInput , typename TMask , typename TOutput >

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetInputClassification

(

const TInput *

image

)

The mri images.

Definition at line 9 of file animaCheckStructureNeighborFilter.hxx.

SetInputMap()

template<typename TInput , typename TMask , typename TOutput >

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetInputMap

(

const TMask *

image

)

Definition at line 15 of file animaCheckStructureNeighborFilter.hxx.

SetLabelToCheck()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetLabelToCheck ( int  _arg )

virtual

SetOutputFilename()

template<typename TInput , typename TMask , typename TOutput = TInput>

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetOutputFilename ( std::string  filename )

inline

Definition at line 96 of file animaCheckStructureNeighborFilter.h.

SetRatio()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetRatio ( double  _arg )

virtual

SetTol()

template<typename TInput , typename TMask , typename TOutput = TInput>

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetTol ( const double  tol )

inline

Definition at line 76 of file animaCheckStructureNeighborFilter.h.

SetVerbose()

template<typename TInput , typename TMask , typename TOutput = TInput>

virtual void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::SetVerbose ( bool  _arg )

virtual

WriteOutputs()

template<typename TInput , typename TMask , typename TOutput >

void anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::WriteOutputs

(

)

Definition at line 36 of file animaCheckStructureNeighborFilter.hxx.

References anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GenerateData().

Referenced by anima::CheckStructureNeighborFilter< TInput, TMask, TOutput >::GetInputMap().

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The documentation for this class was generated from the following files:

• animaCheckStructureNeighborFilter.h
• animaCheckStructureNeighborFilter.hxx