#include <animaDistortionCorrectionBlockMatcher.h>

Inheritance diagram for anima::DistortionCorrectionBlockMatcher< TInputImageType >:

Collaboration diagram for anima::DistortionCorrectionBlockMatcher< TInputImageType >:

Public Types
typedef Superclass::AgregatorType	AgregatorType

typedef Superclass::BaseInputTransformPointer	BaseInputTransformPointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::MetricPointer	MetricPointer

typedef Superclass::OptimizerPointer	OptimizerPointer

typedef Superclass::PointType	PointType

enum	SimilarityDefinition { MeanSquares = 0, Correlation, SquaredCorrelation }

typedef BaseBlockMatcher< TInputImageType >	Superclass

enum	TransformDefinition { Direction = 0, DirectionScale, DirectionScaleSkew }

Public Types inherited from anima::BaseBlockMatcher< TInputImageType >
typedef anima::BaseTransformAgregator< TInputImageType::ImageDimension >	AgregatorType

typedef BaseInputTransformType::Pointer	BaseInputTransformPointer

typedef AgregatorType::BaseInputTransformType	BaseInputTransformType

typedef InputImageType::RegionType	ImageRegionType

typedef InputImageType::Pointer	InputImagePointer

typedef TInputImageType	InputImageType

typedef AgregatorType::InternalScalarType	InternalScalarType

typedef MaskImageType::Pointer	MaskImagePointer

typedef itk::Image< unsigned char, TInputImageType::ImageDimension >	MaskImageType

typedef MetricType::Pointer	MetricPointer

typedef itk::SingleValuedCostFunction	MetricType

enum	OptimizerDefinition { Exhaustive = 0, Bobyqa }

typedef OptimizerType::Pointer	OptimizerPointer

typedef itk::SingleValuedNonLinearOptimizer	OptimizerType

typedef InputImageType::PointType	PointType

typedef BaseBlockMatcher	Self

Public Member Functions
	DistortionCorrectionBlockMatcher ()

AgregatorType::TRANSFORM_TYPE	GetAgregatorInputTransformType ()

TransformDefinition &	GetBlockTransformType ()

bool	GetMaximizedMetric ()

void	SetBlockTransformType (TransformDefinition val)

void	SetScaleMax (double val)

void	SetSearchScaleRadius (double val)

void	SetSearchSkewRadius (double val)

void	SetSimilarityType (SimilarityDefinition val)

void	SetSkewMax (double val)

void	SetTransformDirection (unsigned int val)

void	SetTranslateMax (double val)

virtual	~DistortionCorrectionBlockMatcher ()

Public Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
	BaseBlockMatcher ()

MaskImagePointer &	GetBlockGenerationMask ()

double	GetBlockPercentageKept ()

std::vector< PointType > &	GetBlockPositions ()

ImageRegionType &	GetBlockRegion (unsigned int i)

std::vector< ImageRegionType > &	GetBlockRegions ()

unsigned int	GetBlockSize ()

unsigned int	GetBlockSpacing ()

BaseInputTransformPointer &	GetBlockTransformPointer (unsigned int i)

std::vector< BaseInputTransformPointer > &	GetBlockTransformPointers ()

double	GetBlockVarianceThreshold ()

const std::vector< double > &	GetBlockWeights ()

InputImagePointer &	GetMovingImage ()

unsigned int	GetNumberOfWorkUnits ()

OptimizerDefinition	GetOptimizerType ()

InputImagePointer &	GetReferenceImage ()

double	GetSearchRadius ()

bool	GetVerbose ()

void	SetBlockGenerationMask (MaskImageType *image)

void	SetBlockPercentageKept (double val)

void	SetBlockSize (unsigned int val)

void	SetBlockSpacing (unsigned int val)

void	SetBlockVarianceThreshold (double val)

void	SetFinalRadius (double val)

void	SetForceComputeBlocks (bool val)

void	SetMovingImage (InputImageType *image)

void	SetNumberOfWorkUnits (unsigned int val)

void	SetOptimizerMaximumIterations (unsigned int val)

void	SetOptimizerType (OptimizerDefinition val)

void	SetReferenceImage (InputImageType *image)

void	SetSearchRadius (double val)

void	SetStepSize (double val)

void	SetVerbose (bool value)

void	Update ()

virtual	~BaseBlockMatcher ()

Protected Member Functions
virtual void	BlockMatchingSetup (MetricPointer &metric, unsigned int block)

virtual double	ComputeBlockWeight (double val, unsigned int block)

virtual BaseInputTransformPointer	GetNewBlockTransform (PointType &blockCenter)

virtual MetricPointer	SetupMetric ()

virtual void	TransformDependantOptimizerSetup (OptimizerPointer &optimizer)

Protected Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
void	BlockMatch (unsigned int startIndex, unsigned int endIndex)

virtual void	InitializeBlocks ()

void	ProcessBlockMatch ()

void	SetBlockPositions (std::vector< PointType > &val)

void	SetBlockRegions (std::vector< ImageRegionType > &val)

void	SetBlockWeights (std::vector< double > &val)

virtual OptimizerPointer	SetupOptimizer ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::BaseBlockMatcher< TInputImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreadedMatching (void *arg)

Detailed Description

template<typename TInputImageType>
class anima::DistortionCorrectionBlockMatcher< TInputImageType >

Definition at line 8 of file animaDistortionCorrectionBlockMatcher.h.

Member Typedef Documentation

◆ AgregatorType

template<typename TInputImageType>

typedef Superclass::AgregatorType anima::DistortionCorrectionBlockMatcher< TInputImageType >::AgregatorType

Definition at line 31 of file animaDistortionCorrectionBlockMatcher.h.

◆ BaseInputTransformPointer

template<typename TInputImageType>

typedef Superclass::BaseInputTransformPointer anima::DistortionCorrectionBlockMatcher< TInputImageType >::BaseInputTransformPointer

Definition at line 33 of file animaDistortionCorrectionBlockMatcher.h.

◆ InputImageType

template<typename TInputImageType>

typedef Superclass::InputImageType anima::DistortionCorrectionBlockMatcher< TInputImageType >::InputImageType

Definition at line 29 of file animaDistortionCorrectionBlockMatcher.h.

◆ MetricPointer

template<typename TInputImageType>

typedef Superclass::MetricPointer anima::DistortionCorrectionBlockMatcher< TInputImageType >::MetricPointer

Definition at line 32 of file animaDistortionCorrectionBlockMatcher.h.

◆ OptimizerPointer

template<typename TInputImageType>

typedef Superclass::OptimizerPointer anima::DistortionCorrectionBlockMatcher< TInputImageType >::OptimizerPointer

Definition at line 34 of file animaDistortionCorrectionBlockMatcher.h.

◆ PointType

template<typename TInputImageType>

typedef Superclass::PointType anima::DistortionCorrectionBlockMatcher< TInputImageType >::PointType

Definition at line 30 of file animaDistortionCorrectionBlockMatcher.h.

◆ Superclass

template<typename TInputImageType>

typedef BaseBlockMatcher<TInputImageType> anima::DistortionCorrectionBlockMatcher< TInputImageType >::Superclass

Definition at line 28 of file animaDistortionCorrectionBlockMatcher.h.

Member Enumeration Documentation

◆ SimilarityDefinition

template<typename TInputImageType>

enum anima::DistortionCorrectionBlockMatcher::SimilarityDefinition

Enumerator
MeanSquares
Correlation
SquaredCorrelation

Definition at line 14 of file animaDistortionCorrectionBlockMatcher.h.

◆ TransformDefinition

template<typename TInputImageType>

enum anima::DistortionCorrectionBlockMatcher::TransformDefinition

Enumerator
Direction
DirectionScale
DirectionScaleSkew

Definition at line 21 of file animaDistortionCorrectionBlockMatcher.h.

Constructor & Destructor Documentation

◆ DistortionCorrectionBlockMatcher()

template<typename TInputImageType >

anima::DistortionCorrectionBlockMatcher< TInputImageType >::DistortionCorrectionBlockMatcher ( )

Definition at line 20 of file animaDistortionCorrectionBlockMatcher.hxx.

References DirectionScaleSkew, anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetMaximizedMetric(), and SquaredCorrelation.

◆ ~DistortionCorrectionBlockMatcher()

template<typename TInputImageType>

virtual anima::DistortionCorrectionBlockMatcher< TInputImageType >::~DistortionCorrectionBlockMatcher ( )

inlinevirtual

Definition at line 12 of file animaDistortionCorrectionBlockMatcher.h.

Member Function Documentation

◆ BlockMatchingSetup()

template<typename TInputImageType >

void anima::DistortionCorrectionBlockMatcher< TInputImageType >::BlockMatchingSetup	(	MetricPointer &	metric,
		unsigned int	block
	)

protectedvirtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 242 of file animaDistortionCorrectionBlockMatcher.hxx.

References MeanSquares, anima::DirectionScaleSkewTransform< TScalarType >::SetIdentity(), and anima::DistortionCorrectionBlockMatcher< TInputImageType >::TransformDependantOptimizerSetup().

Referenced by anima::DistortionCorrectionBlockMatcher< TInputImageType >::ComputeBlockWeight(), and anima::DistortionCorrectionBlockMatcher< TInputImageType >::SetSimilarityType().

◆ ComputeBlockWeight()

template<typename TInputImageType >

double anima::DistortionCorrectionBlockMatcher< TInputImageType >::ComputeBlockWeight	(	double	val,
		unsigned int	block
	)

protectedvirtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 159 of file animaDistortionCorrectionBlockMatcher.hxx.

References anima::DistortionCorrectionBlockMatcher< TInputImageType >::BlockMatchingSetup(), Correlation, MeanSquares, and SquaredCorrelation.

Referenced by anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetNewBlockTransform(), and anima::DistortionCorrectionBlockMatcher< TInputImageType >::SetSimilarityType().

◆ GetAgregatorInputTransformType()

template<typename TInputImageType >

DistortionCorrectionBlockMatcher< TInputImageType >::AgregatorType::TRANSFORM_TYPE anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetAgregatorInputTransformType ( )

virtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 49 of file animaDistortionCorrectionBlockMatcher.hxx.

References anima::DistortionCorrectionBlockMatcher< TInputImageType >::SetupMetric().

Referenced by anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetMaximizedMetric().

◆ GetBlockTransformType()

template<typename TInputImageType>

TransformDefinition& anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetBlockTransformType ( )

inline

Definition at line 38 of file animaDistortionCorrectionBlockMatcher.h.

◆ GetMaximizedMetric()

template<typename TInputImageType >

bool anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetMaximizedMetric ( )

virtual

Implements anima::BaseBlockMatcher< TInputImageType >.

Definition at line 38 of file animaDistortionCorrectionBlockMatcher.hxx.

References anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetAgregatorInputTransformType(), and MeanSquares.

Referenced by anima::DistortionCorrectionBlockMatcher< TInputImageType >::DistortionCorrectionBlockMatcher(), and anima::DistortionCorrectionBlockMatcher< TInputImageType >::SetTransformDirection().

◆ GetNewBlockTransform()

template<typename TInputImageType >

DistortionCorrectionBlockMatcher< TInputImageType >::BaseInputTransformPointer anima::DistortionCorrectionBlockMatcher< TInputImageType >::GetNewBlockTransform ( PointType & blockCenter )