ANIMA
4.0
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Compute the mahalanobis images from the NABT model. More...
#include <animaComputeMahalanobisImagesFilter.h>
Public Types | |
typedef itk::SmartPointer< const Self > | ConstPointer |
typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType > | GaussianFunctionType |
typedef itk::ImageRegionConstIterator< ImageTypeUC > | ImageConstIteratorTypeUC |
typedef ImageTypeUC::Pointer | ImagePointerUC |
typedef itk::Image< PixelTypeUC, 3 > | ImageTypeUC |
typedef itk::ImageRegionConstIterator< InputImageType > | InputConstIteratorType |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef TInputImage | InputImageType |
typedef itk::ImageRegionConstIterator< MaskImageType > | MaskConstIteratorType |
typedef TMaskImage | MaskImageType |
typedef itk::VariableLengthVector< double > | MeasurementVectorType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef Superclass::OutputImageRegionType | OutputImageRegionType |
typedef TOutput | OutputImageType |
typedef itk::ImageRegionIterator< OutputImageType > | OutputIteratorType |
typedef OutputImageType::PixelType | OutputPixelType |
typedef unsigned char | PixelTypeUC |
typedef itk::SmartPointer< Self > | Pointer |
typedef itk::RescaleIntensityImageFilter< TInputImage, ImageTypeUC > | RescaleFilterType |
typedef ComputeMahalanobisImagesFilter | Self |
typedef itk::ImageToImageFilter< TInputImage, TOutput > | Superclass |
Public Member Functions | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
virtual const char * | GetNameOfClass () const |
OutputImagePointer | GetOutputMahaCSF () |
OutputImagePointer | GetOutputMahaGM () |
OutputImagePointer | GetOutputMahaMaximum () |
OutputImagePointer | GetOutputMahaMinimum () |
OutputImagePointer | GetOutputMahaWM () |
std::vector< GaussianFunctionType::Pointer > | GetSolutionGM () |
virtual bool | GetVerbose () |
void | SetGaussianModel (std::vector< GaussianFunctionType::Pointer > solution) |
void | SetInputImage1 (const InputImageType *image) |
void | SetInputImage2 (const InputImageType *image) |
void | SetInputImage3 (const InputImageType *image) |
void | SetMask (const TMaskImage *mask) |
void | SetOutputMahaCSFFilename (std::string filename) |
void | SetOutputMahaGMFilename (std::string filename) |
void | SetOutputMahaMaximumFilename (std::string filename) |
void | SetOutputMahaMinimumFilename (std::string filename) |
void | SetOutputMahaWMFilename (std::string filename) |
void | SetSolutionReadFilename (std::string filename) |
void | SetTol (const double tol) |
virtual void | SetVerbose (bool _arg) |
void | WriteOutputs () |
Static Public Member Functions | |
static void | eventCallback (itk::Object *caller, const itk::EventObject &event, void *clientData) |
static Pointer | New () |
Protected Member Functions | |
void | BeforeThreadedGenerateData () ITK_OVERRIDE |
ComputeMahalanobisImagesFilter () | |
void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE |
InputImageType::ConstPointer | GetInputImage1 () |
InputImageType::ConstPointer | GetInputImage2 () |
InputImageType::ConstPointer | GetInputImage3 () |
TMaskImage::ConstPointer | GetMask () |
itk::DataObject::Pointer | MakeOutput (unsigned int idx) |
virtual | ~ComputeMahalanobisImagesFilter () |
Compute the mahalanobis images from the NABT model.
Definition at line 19 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::SmartPointer<const Self> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::ConstPointer |
Definition at line 27 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType > anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GaussianFunctionType |
Definition at line 62 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::ImageRegionConstIterator<ImageTypeUC> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::ImageConstIteratorTypeUC |
Definition at line 56 of file animaComputeMahalanobisImagesFilter.h.
typedef ImageTypeUC::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::ImagePointerUC |
Definition at line 55 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::Image<PixelTypeUC,3> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::ImageTypeUC |
Definition at line 54 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::ImageRegionConstIterator< InputImageType > anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::InputConstIteratorType |
Definition at line 38 of file animaComputeMahalanobisImagesFilter.h.
typedef InputImageType::ConstPointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::InputImageConstPointer |
Definition at line 37 of file animaComputeMahalanobisImagesFilter.h.
typedef TInputImage anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::InputImageType |
Type of the input image.
Definition at line 36 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::ImageRegionConstIterator< MaskImageType > anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::MaskConstIteratorType |
Definition at line 42 of file animaComputeMahalanobisImagesFilter.h.
typedef TMaskImage anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::MaskImageType |
Type of the mask image.
Definition at line 41 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::VariableLengthVector<double> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::MeasurementVectorType |
Definition at line 61 of file animaComputeMahalanobisImagesFilter.h.
typedef OutputImageType::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::OutputImagePointer |
Definition at line 46 of file animaComputeMahalanobisImagesFilter.h.
typedef Superclass::OutputImageRegionType anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::OutputImageRegionType |
Superclass typedefs.
Definition at line 51 of file animaComputeMahalanobisImagesFilter.h.
typedef TOutput anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::OutputImageType |
Type of the output images.
Definition at line 45 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::ImageRegionIterator< OutputImageType > anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::OutputIteratorType |
Definition at line 47 of file animaComputeMahalanobisImagesFilter.h.
typedef OutputImageType::PixelType anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::OutputPixelType |
Definition at line 48 of file animaComputeMahalanobisImagesFilter.h.
typedef unsigned char anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::PixelTypeUC |
Definition at line 53 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::SmartPointer<Self> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::Pointer |
Definition at line 26 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::RescaleIntensityImageFilter<TInputImage,ImageTypeUC> anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::RescaleFilterType |
Define filter types.
Definition at line 59 of file animaComputeMahalanobisImagesFilter.h.
typedef ComputeMahalanobisImagesFilter anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::Self |
Standard class typedefs.
Definition at line 24 of file animaComputeMahalanobisImagesFilter.h.
typedef itk::ImageToImageFilter< TInputImage, TOutput > anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::Superclass |
Definition at line 25 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 114 of file animaComputeMahalanobisImagesFilter.h.
References anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::MakeOutput().
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Definition at line 136 of file animaComputeMahalanobisImagesFilter.h.
References anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::BeforeThreadedGenerateData(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::DynamicThreadedGenerateData(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetInputImage1(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetInputImage2(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetInputImage3(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetMask(), and anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::MakeOutput().
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Definition at line 151 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
virtual::itk::LightObject::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::CreateAnother | ( | void | ) | const |
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Definition at line 200 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Definition at line 104 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 33 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Definition at line 40 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Definition at line 47 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Definition at line 54 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Run-time type information (and related methods)
TOutput::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaCSF | ( | ) |
Definition at line 92 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetSolutionGM().
TOutput::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaGM | ( | ) |
Definition at line 97 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetSolutionGM().
TOutput::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaMaximum | ( | ) |
Definition at line 112 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetSolutionGM().
TOutput::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaMinimum | ( | ) |
Definition at line 107 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetSolutionGM().
TOutput::Pointer anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaWM | ( | ) |
Definition at line 102 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetSolutionGM().
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Definition at line 87 of file animaComputeMahalanobisImagesFilter.h.
References anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaCSF(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaGM(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaMaximum(), anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaMinimum(), and anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::GetOutputMahaWM().
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Create the Output
Definition at line 62 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::ComputeMahalanobisImagesFilter(), and anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::~ComputeMahalanobisImagesFilter().
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Method for creation through the object factory.
Referenced by anima::GcStremMsLesionsSegmentationFilter< TInputImage >::GcStremMsLesionsSegmentationFilter().
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Definition at line 86 of file animaComputeMahalanobisImagesFilter.h.
void anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::SetInputImage1 | ( | const InputImageType * | image | ) |
The mri images.
Definition at line 9 of file animaComputeMahalanobisImagesFilter.hxx.
void anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::SetInputImage2 | ( | const InputImageType * | image | ) |
Definition at line 15 of file animaComputeMahalanobisImagesFilter.hxx.
void anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::SetInputImage3 | ( | const InputImageType * | image | ) |
Definition at line 21 of file animaComputeMahalanobisImagesFilter.hxx.
void anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::SetMask | ( | const TMaskImage * | mask | ) |
mask in which the segmentation will be performed
Definition at line 27 of file animaComputeMahalanobisImagesFilter.hxx.
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Definition at line 77 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 78 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 81 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 82 of file animaComputeMahalanobisImagesFilter.h.
References anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::WriteOutputs().
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Definition at line 79 of file animaComputeMahalanobisImagesFilter.h.
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Images for atlas initialisation
Definition at line 75 of file animaComputeMahalanobisImagesFilter.h.
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Definition at line 96 of file animaComputeMahalanobisImagesFilter.h.
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void anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::WriteOutputs | ( | ) |
Definition at line 119 of file animaComputeMahalanobisImagesFilter.hxx.
Referenced by anima::ComputeMahalanobisImagesFilter< TInputImage, TMaskImage, TOutput >::SetOutputMahaMinimumFilename().