anima::Graph3DFilter< TInput, TOutput > Class Template Reference

Class allowing the decimation of the images if necessary (if 3D graph size causes memory problems). This class just launchs NLinksFilter with appropriate image sizes. More...

#include <animaGraph3DFilter.h>

Inheritance diagram for anima::Graph3DFilter< TInput, TOutput >:

Collaboration diagram for anima::Graph3DFilter< TInput, TOutput >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::VariableSizeMatrix< NumericType >	doubleVariableSizeMatrixType
typedef Graph< double, double, double >	GraphType
typedef itk::ImageRegionIterator< TSeedProba >	ImageIteratorTypeProba
typedef TSeedProba::Pointer	ImagePointerProba
typedef TInput::ConstPointer	InputImageConstPointer
typedef TInput::Pointer	InputImagePointer
typedef TInput::PixelType	InputPixelType
typedef itk::ImageRegionConstIterator< TInput >	InRegionConstIteratorType
typedef itk::ImageRegionIterator< TInput >	InRegionIteratorType
typedef itk::ImageRegionConstIterator< TMask >	MaskRegionConstIteratorType
typedef itk::ImageRegionIterator< TMask >	MaskRegionIteratorType
typedef double	NumericType
typedef TOutput::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::ImageRegionIterator< TOutput >	OutputIteratorType
typedef TOutput::PixelType	OutputPixelType
typedef double	PixelTypeD
typedef unsigned char	PixelTypeUC
typedef itk::SmartPointer< Self >	Pointer
typedef itk::ResampleImageFilter< TSeedProba, TSeedProba >	ResampleImageFilterdoubleType
typedef itk::ResampleImageFilter< TMask, TMask >	ResampleImageFilterMaskType
typedef itk::ResampleImageFilter< TInput, TInput >	ResampleImageFilterType
typedef TSeedProba::PixelType	SeedProbaPixelType
typedef Graph3DFilter	Self
typedef itk::ImageToImageFilter< TInput, TOutput >	Superclass
typedef itk::Image< PixelTypeUC, 3 >	TMask
typedef TMask::Pointer	TMaskPointer
typedef itk::IdentityTransform< double, 3 >	TransformType
typedef itk::Image< PixelTypeD, 3 >	TSeedProba

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
TMask::Pointer	Dilate (const TMask *input, const TMask *mask)
virtual const char *	GetNameOfClass () const
OutputImagePointer	GetOutput ()
OutputImagePointer	GetOutputBackground ()
virtual double	GetSigma ()
virtual bool	GetUseSpectralGradient ()
virtual bool	GetVerbose ()
void	SetInputImage (unsigned int i, const TInput *image)
void	SetInputSeedProbaSinks (const TSeedProba *mask)
void	SetInputSeedProbaSources (const TSeedProba *mask)
void	SetMask (const TMask *mask)
void	SetMatFilename (std::string mat)
void	SetMatrix (doubleVariableSizeMatrixType mat)
virtual void	SetSigma (double _arg)
void	SetTol (const double tol)
virtual void	SetUseSpectralGradient (bool _arg)
virtual void	SetVerbose (bool _arg)
TMask::Pointer	Upsample (const TMask *input, TMask::SizeType upSize, TMask::DirectionType outputDirection, TMask::PointType outputOrigin)

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef NLinksFilter< TInput, TMask >	NLinksFilterType

Protected Member Functions
bool	CheckMemory ()
void	FindDownsampleFactor ()
void	GenerateData () ITK_OVERRIDE
TInput::ConstPointer	GetInputImage1 ()
TInput::ConstPointer	GetInputImage2 ()
TInput::ConstPointer	GetInputImage3 ()
TInput::ConstPointer	GetInputImage4 ()
TInput::ConstPointer	GetInputImage5 ()
TSeedProba::ConstPointer	GetInputSeedProbaSinks ()
TSeedProba::ConstPointer	GetInputSeedProbaSources ()
TMask::ConstPointer	GetMask ()
std::string	GetMatFilename (void)
doubleVariableSizeMatrixType	GetMatrix (void)
	Graph3DFilter ()
void	InitResampleFilters ()
itk::DataObject::Pointer	MakeOutput (unsigned int idx)
void	ProcessDownsampledGraphCut (int current_count)
void	ProcessGraphCut ()
virtual	~Graph3DFilter ()

Protected Attributes
NLinksFilterType::Pointer	m_NLinksFilter
NLinksFilterType::Pointer	m_NLinksFilterDecim
ResampleImageFilterType::Pointer	m_Resample1
ResampleImageFilterType::Pointer	m_Resample2
ResampleImageFilterType::Pointer	m_Resample3
ResampleImageFilterType::Pointer	m_Resample4
ResampleImageFilterType::Pointer	m_Resample5
ResampleImageFilterMaskType::Pointer	m_ResampleMask
ResampleImageFilterdoubleType::Pointer	m_ResampleSinks
ResampleImageFilterdoubleType::Pointer	m_ResampleSources

Detailed Description

template<typename TInput, typename TOutput>
class anima::Graph3DFilter< TInput, TOutput >

Class allowing the decimation of the images if necessary (if 3D graph size causes memory problems). This class just launchs NLinksFilter with appropriate image sizes.

Definition at line 23 of file animaGraph3DFilter.h.

Member Typedef Documentation

ConstPointer

template<typename TInput , typename TOutput >

typedef itk::SmartPointer<const Self> anima::Graph3DFilter< TInput, TOutput >::ConstPointer

Definition at line 31 of file animaGraph3DFilter.h.

doubleVariableSizeMatrixType

template<typename TInput , typename TOutput >

typedef itk::VariableSizeMatrix<NumericType> anima::Graph3DFilter< TInput, TOutput >::doubleVariableSizeMatrixType

Definition at line 65 of file animaGraph3DFilter.h.

GraphType

template<typename TInput , typename TOutput >

typedef Graph<double,double,double> anima::Graph3DFilter< TInput, TOutput >::GraphType

Definition at line 62 of file animaGraph3DFilter.h.

ImageIteratorTypeProba

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator<TSeedProba> anima::Graph3DFilter< TInput, TOutput >::ImageIteratorTypeProba

Definition at line 49 of file animaGraph3DFilter.h.

ImagePointerProba

template<typename TInput , typename TOutput >

typedef TSeedProba::Pointer anima::Graph3DFilter< TInput, TOutput >::ImagePointerProba

Definition at line 48 of file animaGraph3DFilter.h.

InputImageConstPointer

template<typename TInput , typename TOutput >

typedef TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::InputImageConstPointer

Definition at line 41 of file animaGraph3DFilter.h.

InputImagePointer

template<typename TInput , typename TOutput >

typedef TInput::Pointer anima::Graph3DFilter< TInput, TOutput >::InputImagePointer

Image typedef support

Definition at line 40 of file animaGraph3DFilter.h.

InputPixelType

template<typename TInput , typename TOutput >

typedef TInput::PixelType anima::Graph3DFilter< TInput, TOutput >::InputPixelType

Definition at line 44 of file animaGraph3DFilter.h.

InRegionConstIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionConstIterator< TInput > anima::Graph3DFilter< TInput, TOutput >::InRegionConstIteratorType

Definition at line 42 of file animaGraph3DFilter.h.

InRegionIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TInput > anima::Graph3DFilter< TInput, TOutput >::InRegionIteratorType

Definition at line 43 of file animaGraph3DFilter.h.

MaskRegionConstIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionConstIterator< TMask > anima::Graph3DFilter< TInput, TOutput >::MaskRegionConstIteratorType

Definition at line 60 of file animaGraph3DFilter.h.

MaskRegionIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TMask > anima::Graph3DFilter< TInput, TOutput >::MaskRegionIteratorType

Definition at line 59 of file animaGraph3DFilter.h.

NLinksFilterType

template<typename TInput , typename TOutput >

typedef NLinksFilter< TInput,TMask> anima::Graph3DFilter< TInput, TOutput >::NLinksFilterType

protected

Definition at line 114 of file animaGraph3DFilter.h.

NumericType

template<typename TInput , typename TOutput >

typedef double anima::Graph3DFilter< TInput, TOutput >::NumericType

Definition at line 64 of file animaGraph3DFilter.h.

OutputImagePointer

template<typename TInput , typename TOutput >

typedef TOutput::Pointer anima::Graph3DFilter< TInput, TOutput >::OutputImagePointer

Definition at line 52 of file animaGraph3DFilter.h.

OutputImageRegionType

template<typename TInput , typename TOutput >

typedef Superclass::OutputImageRegionType anima::Graph3DFilter< TInput, TOutput >::OutputImageRegionType

Superclass typedefs.

Definition at line 94 of file animaGraph3DFilter.h.

OutputIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TOutput > anima::Graph3DFilter< TInput, TOutput >::OutputIteratorType

Definition at line 54 of file animaGraph3DFilter.h.

OutputPixelType

template<typename TInput , typename TOutput >

typedef TOutput::PixelType anima::Graph3DFilter< TInput, TOutput >::OutputPixelType

Definition at line 53 of file animaGraph3DFilter.h.

PixelTypeD

template<typename TInput , typename TOutput >

typedef double anima::Graph3DFilter< TInput, TOutput >::PixelTypeD

Definition at line 46 of file animaGraph3DFilter.h.

PixelTypeUC

template<typename TInput , typename TOutput >

typedef unsigned char anima::Graph3DFilter< TInput, TOutput >::PixelTypeUC

Definition at line 56 of file animaGraph3DFilter.h.

Pointer

template<typename TInput , typename TOutput >

typedef itk::SmartPointer<Self> anima::Graph3DFilter< TInput, TOutput >::Pointer

Definition at line 30 of file animaGraph3DFilter.h.

ResampleImageFilterdoubleType

template<typename TInput , typename TOutput >

typedef itk::ResampleImageFilter<TSeedProba, TSeedProba> anima::Graph3DFilter< TInput, TOutput >::ResampleImageFilterdoubleType

Definition at line 70 of file animaGraph3DFilter.h.

ResampleImageFilterMaskType

template<typename TInput , typename TOutput >

typedef itk::ResampleImageFilter<TMask, TMask> anima::Graph3DFilter< TInput, TOutput >::ResampleImageFilterMaskType

Definition at line 69 of file animaGraph3DFilter.h.

ResampleImageFilterType

template<typename TInput , typename TOutput >

typedef itk::ResampleImageFilter<TInput, TInput> anima::Graph3DFilter< TInput, TOutput >::ResampleImageFilterType

Definition at line 68 of file animaGraph3DFilter.h.

SeedProbaPixelType

template<typename TInput , typename TOutput >

typedef TSeedProba::PixelType anima::Graph3DFilter< TInput, TOutput >::SeedProbaPixelType

Definition at line 50 of file animaGraph3DFilter.h.

Self

template<typename TInput , typename TOutput >

typedef Graph3DFilter anima::Graph3DFilter< TInput, TOutput >::Self

Standard class typedefs.

Definition at line 28 of file animaGraph3DFilter.h.

Superclass

template<typename TInput , typename TOutput >

typedef itk::ImageToImageFilter< TInput , TOutput> anima::Graph3DFilter< TInput, TOutput >::Superclass

Definition at line 29 of file animaGraph3DFilter.h.

TMask

template<typename TInput , typename TOutput >

typedef itk::Image<PixelTypeUC,3> anima::Graph3DFilter< TInput, TOutput >::TMask

Definition at line 57 of file animaGraph3DFilter.h.

TMaskPointer

template<typename TInput , typename TOutput >

typedef TMask::Pointer anima::Graph3DFilter< TInput, TOutput >::TMaskPointer

Definition at line 58 of file animaGraph3DFilter.h.

TransformType

template<typename TInput , typename TOutput >

typedef itk::IdentityTransform<double, 3> anima::Graph3DFilter< TInput, TOutput >::TransformType

Definition at line 67 of file animaGraph3DFilter.h.

TSeedProba

template<typename TInput , typename TOutput >

typedef itk::Image<PixelTypeD,3> anima::Graph3DFilter< TInput, TOutput >::TSeedProba

Definition at line 47 of file animaGraph3DFilter.h.

Constructor & Destructor Documentation

Graph3DFilter()

template<typename TInput , typename TOutput >

anima::Graph3DFilter< TInput, TOutput >::Graph3DFilter ( )

inlineprotected

Definition at line 126 of file animaGraph3DFilter.h.

References anima::Graph3DFilter< TInput, TOutput >::MakeOutput(), and anima::NLinksFilter< TInput, TOutput >::New().

~Graph3DFilter()

template<typename TInput , typename TOutput >

virtual anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter ( )

inlineprotectedvirtual

Definition at line 146 of file animaGraph3DFilter.h.

References anima::Graph3DFilter< TInput, TOutput >::GetInputImage1(), anima::Graph3DFilter< TInput, TOutput >::GetInputImage2(), anima::Graph3DFilter< TInput, TOutput >::GetInputImage3(), anima::Graph3DFilter< TInput, TOutput >::GetInputImage4(), anima::Graph3DFilter< TInput, TOutput >::GetInputImage5(), anima::Graph3DFilter< TInput, TOutput >::GetInputSeedProbaSinks(), anima::Graph3DFilter< TInput, TOutput >::GetInputSeedProbaSources(), anima::Graph3DFilter< TInput, TOutput >::GetMask(), and anima::Graph3DFilter< TInput, TOutput >::MakeOutput().

Member Function Documentation

CheckMemory()

template<typename TInput , typename TOutput >

bool anima::Graph3DFilter< TInput, TOutput >::CheckMemory ( )

protected

Definition at line 254 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::ProcessGraphCut().

Referenced by anima::Graph3DFilter< TInput, TOutput >::GenerateData(), and anima::Graph3DFilter< TInput, TOutput >::GetMatFilename().

CreateAnother()

template<typename TInput , typename TOutput >

virtual::itk::LightObject::Pointer anima::Graph3DFilter< TInput, TOutput >::CreateAnother

(

void

)

const

Dilate()

template<typename TInput , typename TOutput >

itk::Image< unsigned char, 3 >::Pointer anima::Graph3DFilter< TInput, TOutput >::Dilate	(	const TMask *	input,
		const TMask *	mask
	)

Definition at line 529 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::Upsample().

Referenced by anima::Graph3DFilter< TInput, TOutput >::ProcessDownsampledGraphCut(), and anima::Graph3DFilter< TInput, TOutput >::SetMatrix().

FindDownsampleFactor()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::FindDownsampleFactor ( )

protected

Definition at line 330 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::InitResampleFilters().

Referenced by anima::Graph3DFilter< TInput, TOutput >::GetMatFilename().

GenerateData()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::GenerateData ( )

protected

Definition at line 154 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::CheckMemory().

Referenced by anima::Graph3DFilter< TInput, TOutput >::GetMatFilename(), and anima::Graph3DFilter< TInput, TOutput >::GetOutputBackground().

GetInputImage1()

template<typename TInput , typename TOutput >

TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputImage1 ( )

protected

Definition at line 63 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputImage2()

template<typename TInput , typename TOutput >

TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputImage2 ( )

protected

Definition at line 91 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputImage3()

template<typename TInput , typename TOutput >

TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputImage3 ( )

protected

Definition at line 98 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputImage4()

template<typename TInput , typename TOutput >

TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputImage4 ( )

protected

Definition at line 105 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputImage5()

template<typename TInput , typename TOutput >

TInput::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputImage5 ( )

protected

Definition at line 112 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputSeedProbaSinks()

template<typename TInput , typename TOutput >

itk::Image< double, 3 >::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputSeedProbaSinks ( )

protected

Definition at line 77 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetInputSeedProbaSources()

template<typename TInput , typename TOutput >

itk::Image< double, 3 >::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetInputSeedProbaSources ( )

protected

Definition at line 70 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetMask()

template<typename TInput , typename TOutput >

itk::Image< unsigned char, 3 >::ConstPointer anima::Graph3DFilter< TInput, TOutput >::GetMask ( )

protected

Definition at line 84 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

GetMatFilename()

template<typename TInput , typename TOutput >

std::string anima::Graph3DFilter< TInput, TOutput >::GetMatFilename ( void  )

inlineprotected

Definition at line 165 of file animaGraph3DFilter.h.

References anima::Graph3DFilter< TInput, TOutput >::CheckMemory(), anima::Graph3DFilter< TInput, TOutput >::FindDownsampleFactor(), anima::Graph3DFilter< TInput, TOutput >::GenerateData(), anima::Graph3DFilter< TInput, TOutput >::InitResampleFilters(), anima::Graph3DFilter< TInput, TOutput >::ProcessDownsampledGraphCut(), and anima::Graph3DFilter< TInput, TOutput >::ProcessGraphCut().

GetMatrix()

template<typename TInput , typename TOutput >

doubleVariableSizeMatrixType anima::Graph3DFilter< TInput, TOutput >::GetMatrix ( void  )

inlineprotected

Definition at line 164 of file animaGraph3DFilter.h.

GetNameOfClass()

template<typename TInput , typename TOutput >

virtual const char* anima::Graph3DFilter< TInput, TOutput >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

GetOutput()

template<typename TInputImage , typename TOutput >

TOutput::Pointer anima::Graph3DFilter< TInputImage, TOutput >::GetOutput

(

)

Definition at line 140 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::SetMatrix().

GetOutputBackground()

template<typename TInputImage , typename TOutput >

TOutput::Pointer anima::Graph3DFilter< TInputImage, TOutput >::GetOutputBackground

(

)

Definition at line 145 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::GenerateData().

Referenced by anima::Graph3DFilter< TInput, TOutput >::SetMatrix().

GetSigma()

template<typename TInput , typename TOutput >

virtual double anima::Graph3DFilter< TInput, TOutput >::GetSigma ( )

virtual

GetUseSpectralGradient()

template<typename TInput , typename TOutput >

virtual bool anima::Graph3DFilter< TInput, TOutput >::GetUseSpectralGradient ( )

virtual

GetVerbose()

template<typename TInput , typename TOutput >

virtual bool anima::Graph3DFilter< TInput, TOutput >::GetVerbose ( )

virtual

InitResampleFilters()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::InitResampleFilters ( )

protected

Definition at line 400 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::ProcessDownsampledGraphCut().

Referenced by anima::Graph3DFilter< TInput, TOutput >::FindDownsampleFactor(), and anima::Graph3DFilter< TInput, TOutput >::GetMatFilename().

MakeOutput()

template<typename TInputImage , typename TOutput >

itk::DataObject::Pointer anima::Graph3DFilter< TInputImage, TOutput >::MakeOutput ( unsigned int  idx )

protected

Create the Output

Definition at line 119 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::Graph3DFilter(), and anima::Graph3DFilter< TInput, TOutput >::~Graph3DFilter().

New()

template<typename TInput , typename TOutput >

static Pointer anima::Graph3DFilter< TInput, TOutput >::New ( )

static

Method for creation through the object factory.

Referenced by anima::GraphCutFilter< TInput, TOutput >::GraphCutFilter().

ProcessDownsampledGraphCut()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::ProcessDownsampledGraphCut ( int  current_count )

protected

Definition at line 482 of file animaGraph3DFilter.hxx.

References anima::Graph3DFilter< TInput, TOutput >::Dilate().

Referenced by anima::Graph3DFilter< TInput, TOutput >::GetMatFilename(), and anima::Graph3DFilter< TInput, TOutput >::InitResampleFilters().

ProcessGraphCut()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::ProcessGraphCut ( )

protected

Definition at line 291 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::CheckMemory(), and anima::Graph3DFilter< TInput, TOutput >::GetMatFilename().

SetInputImage()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetInputImage	(	unsigned int	i,
		const TInput *	image
	)

The mri images.

Definition at line 9 of file animaGraph3DFilter.hxx.

SetInputSeedProbaSinks()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetInputSeedProbaSinks

(

const TSeedProba *

mask

)

Definition at line 51 of file animaGraph3DFilter.hxx.

SetInputSeedProbaSources()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetInputSeedProbaSources

(

const TSeedProba *

mask

)

probabilities of the object and the background, respectively

Definition at line 45 of file animaGraph3DFilter.hxx.

SetMask()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetMask

(

const TMask *

mask

)

mask in which the segmentation will be performed

Definition at line 57 of file animaGraph3DFilter.hxx.

SetMatFilename()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetMatFilename ( std::string  mat )

inline

Definition at line 84 of file animaGraph3DFilter.h.

SetMatrix()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetMatrix ( doubleVariableSizeMatrixType  mat )

inline

Definition at line 85 of file animaGraph3DFilter.h.

References anima::Graph3DFilter< TInput, TOutput >::Dilate(), anima::Graph3DFilter< TInput, TOutput >::GetOutput(), anima::Graph3DFilter< TInput, TOutput >::GetOutputBackground(), and anima::Graph3DFilter< TInput, TOutput >::Upsample().

SetSigma()

template<typename TInput , typename TOutput >

virtual void anima::Graph3DFilter< TInput, TOutput >::SetSigma ( double  _arg )

virtual

SetTol()

template<typename TInput , typename TOutput >

void anima::Graph3DFilter< TInput, TOutput >::SetTol ( const double  tol )

inline

Definition at line 96 of file animaGraph3DFilter.h.

SetUseSpectralGradient()

template<typename TInput , typename TOutput >

virtual void anima::Graph3DFilter< TInput, TOutput >::SetUseSpectralGradient ( bool  _arg )

virtual

SetVerbose()

template<typename TInput , typename TOutput >

virtual void anima::Graph3DFilter< TInput, TOutput >::SetVerbose ( bool  _arg )

virtual

Upsample()

template<typename TInput , typename TOutput >

itk::Image< unsigned char, 3 >::Pointer anima::Graph3DFilter< TInput, TOutput >::Upsample	(	const TMask *	input,
		TMask::SizeType	upSize,
		TMask::DirectionType	outputDirection,
		TMask::PointType	outputOrigin
	)

Definition at line 558 of file animaGraph3DFilter.hxx.

Referenced by anima::Graph3DFilter< TInput, TOutput >::Dilate(), and anima::Graph3DFilter< TInput, TOutput >::SetMatrix().

Member Data Documentation

m_NLinksFilter

template<typename TInput , typename TOutput >

NLinksFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_NLinksFilter

protected

Definition at line 115 of file animaGraph3DFilter.h.

m_NLinksFilterDecim

template<typename TInput , typename TOutput >

NLinksFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_NLinksFilterDecim

protected

Definition at line 116 of file animaGraph3DFilter.h.

m_Resample1

template<typename TInput , typename TOutput >

ResampleImageFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_Resample1

protected

Definition at line 117 of file animaGraph3DFilter.h.

m_Resample2

template<typename TInput , typename TOutput >

ResampleImageFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_Resample2

protected

Definition at line 118 of file animaGraph3DFilter.h.

m_Resample3

template<typename TInput , typename TOutput >

ResampleImageFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_Resample3

protected

Definition at line 119 of file animaGraph3DFilter.h.

m_Resample4

template<typename TInput , typename TOutput >

ResampleImageFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_Resample4

protected

Definition at line 120 of file animaGraph3DFilter.h.

m_Resample5

template<typename TInput , typename TOutput >

ResampleImageFilterType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_Resample5

protected

Definition at line 121 of file animaGraph3DFilter.h.

m_ResampleMask

template<typename TInput , typename TOutput >

ResampleImageFilterMaskType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_ResampleMask

protected

Definition at line 122 of file animaGraph3DFilter.h.

m_ResampleSinks

template<typename TInput , typename TOutput >

ResampleImageFilterdoubleType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_ResampleSinks

protected

Definition at line 124 of file animaGraph3DFilter.h.

m_ResampleSources

template<typename TInput , typename TOutput >

ResampleImageFilterdoubleType::Pointer anima::Graph3DFilter< TInput, TOutput >::m_ResampleSources

protected

Definition at line 123 of file animaGraph3DFilter.h.

---

The documentation for this class was generated from the following files:

• animaGraph3DFilter.h
• animaGraph3DFilter.hxx