anima::TLinksFilter< TInput, TOutput > Class Template Reference

Class computing the probability maps that are used to create the t-links. More...

#include <animaTLinksFilter.h>

Inheritance diagram for anima::TLinksFilter< TInput, TOutput >:

Collaboration diagram for anima::TLinksFilter< TInput, TOutput >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::VariableSizeMatrix< NumericType >	DoubleVariableSizeMatrixType
typedef itk::ImageRegionConstIterator< TInput >	InConstIteratorType
typedef itk::ImageRegionIterator< TInput >	InIteratorType
typedef TInput::ConstPointer	InputImageConstPointer
typedef TInput::Pointer	InputImagePointer
typedef TInput::PixelType	InputPixelType
typedef itk::Matrix< double, 1, 1 >	MatrixTypeRes
typedef double	NumericType
typedef TOutput::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef TOutput::PixelType	OutputPixelType
typedef itk::ImageRegionIterator< TOutput >	OutRegionIteratorType
typedef double	PixelTypeD
typedef unsigned char	PixelTypeUC
typedef itk::SmartPointer< Self >	Pointer
typedef itk::ImageRegionConstIterator< TSeedMask >	SeedMaskRegionConstIteratorType
typedef itk::ImageRegionIterator< TSeedMask >	SeedMaskRegionIteratorType
typedef itk::ImageRegionConstIterator< TSeedProba >	SeedProbaRegionConstIteratorType
typedef TLinksFilter	Self
typedef itk::ImageToImageFilter< TInput,TOutput >	Superclass
typedef itk::Image< PixelTypeUC, 3 >	TSeedMask
typedef TSeedMask::Pointer	TSeedMaskPointer
typedef itk::Image< PixelTypeD, 3 >	TSeedProba

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual double	GetAlpha ()
virtual double	GetMultiVarSinks ()
virtual double	GetMultiVarSources ()
virtual const char *	GetNameOfClass () const
virtual unsigned int	GetNbModalities ()
TOutput *	GetOutputSinks ()
TOutput *	GetOutputSources ()
TLinkMode	GetTLinkMode ()
virtual bool	GetVerbose ()
virtual void	SetAlpha (double _arg)
void	SetInputImage (unsigned int i, const TInput *image)
void	SetInputSeedSinksMask (const TSeedMask *mask)
void	SetInputSeedSinksProba (const TSeedProba *mask)
void	SetInputSeedSourcesMask (const TSeedMask *mask)
void	SetInputSeedSourcesProba (const TSeedProba *mask)
virtual void	SetMultiVarSinks (double _arg)
virtual void	SetMultiVarSources (double _arg)
virtual void	SetNbModalities (unsigned int _arg)
void	SetTLinkMode (TLinkMode m)
void	SetTol (const double tol)
virtual void	SetVerbose (bool _arg)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	computeSingleGaussian ()
void	computeSingleGaussianSeeds (TSeedMask::ConstPointer seedMask, OutputImagePointer output, double multiVar, TSeedMask::ConstPointer seedMaskOpp=ITK_NULLPTR)
void	computeStrem ()
void	GenerateData () ITK_OVERRIDE
TSeedMask::ConstPointer	GetInputSeedSinksMask ()
TSeedProba::ConstPointer	GetInputSeedSinksProba ()
TSeedMask::ConstPointer	GetInputSeedSourcesMask ()
TSeedProba::ConstPointer	GetInputSeedSourcesProba ()
itk::DataObject::Pointer	MakeOutput (unsigned int idx)
	TLinksFilter ()
virtual	~TLinksFilter ()

Detailed Description

template<typename TInput, typename TOutput>
class anima::TLinksFilter< TInput, TOutput >

Class computing the probability maps that are used to create the t-links.

• single gaussian method computes probability maps using binary masks as input.

Definition at line 22 of file animaTLinksFilter.h.

Member Typedef Documentation

ConstPointer

template<typename TInput , typename TOutput >

typedef itk::SmartPointer<const Self> anima::TLinksFilter< TInput, TOutput >::ConstPointer

Definition at line 30 of file animaTLinksFilter.h.

DoubleVariableSizeMatrixType

template<typename TInput , typename TOutput >

typedef itk::VariableSizeMatrix<NumericType> anima::TLinksFilter< TInput, TOutput >::DoubleVariableSizeMatrixType

Definition at line 60 of file animaTLinksFilter.h.

InConstIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionConstIterator< TInput > anima::TLinksFilter< TInput, TOutput >::InConstIteratorType

Definition at line 42 of file animaTLinksFilter.h.

InIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TInput > anima::TLinksFilter< TInput, TOutput >::InIteratorType

Definition at line 43 of file animaTLinksFilter.h.

InputImageConstPointer

template<typename TInput , typename TOutput >

typedef TInput::ConstPointer anima::TLinksFilter< TInput, TOutput >::InputImageConstPointer

Definition at line 41 of file animaTLinksFilter.h.

InputImagePointer

template<typename TInput , typename TOutput >

typedef TInput::Pointer anima::TLinksFilter< TInput, TOutput >::InputImagePointer

Definition at line 40 of file animaTLinksFilter.h.

InputPixelType

template<typename TInput , typename TOutput >

typedef TInput::PixelType anima::TLinksFilter< TInput, TOutput >::InputPixelType

Image typedef support

Definition at line 39 of file animaTLinksFilter.h.

MatrixTypeRes

template<typename TInput , typename TOutput >

typedef itk::Matrix<double, 1, 1> anima::TLinksFilter< TInput, TOutput >::MatrixTypeRes

Definition at line 61 of file animaTLinksFilter.h.

NumericType

template<typename TInput , typename TOutput >

typedef double anima::TLinksFilter< TInput, TOutput >::NumericType

Definition at line 59 of file animaTLinksFilter.h.

OutputImagePointer

template<typename TInput , typename TOutput >

typedef TOutput::Pointer anima::TLinksFilter< TInput, TOutput >::OutputImagePointer

Definition at line 46 of file animaTLinksFilter.h.

OutputImageRegionType

template<typename TInput , typename TOutput >

typedef Superclass::OutputImageRegionType anima::TLinksFilter< TInput, TOutput >::OutputImageRegionType

Superclass typedefs.

Definition at line 87 of file animaTLinksFilter.h.

OutputPixelType

template<typename TInput , typename TOutput >

typedef TOutput::PixelType anima::TLinksFilter< TInput, TOutput >::OutputPixelType

Definition at line 45 of file animaTLinksFilter.h.

OutRegionIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TOutput > anima::TLinksFilter< TInput, TOutput >::OutRegionIteratorType

Definition at line 47 of file animaTLinksFilter.h.

PixelTypeD

template<typename TInput , typename TOutput >

typedef double anima::TLinksFilter< TInput, TOutput >::PixelTypeD

Definition at line 49 of file animaTLinksFilter.h.

PixelTypeUC

template<typename TInput , typename TOutput >

typedef unsigned char anima::TLinksFilter< TInput, TOutput >::PixelTypeUC

Definition at line 53 of file animaTLinksFilter.h.

Pointer

template<typename TInput , typename TOutput >

typedef itk::SmartPointer<Self> anima::TLinksFilter< TInput, TOutput >::Pointer

Definition at line 29 of file animaTLinksFilter.h.

SeedMaskRegionConstIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionConstIterator< TSeedMask > anima::TLinksFilter< TInput, TOutput >::SeedMaskRegionConstIteratorType

Definition at line 57 of file animaTLinksFilter.h.

SeedMaskRegionIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionIterator< TSeedMask > anima::TLinksFilter< TInput, TOutput >::SeedMaskRegionIteratorType

Definition at line 56 of file animaTLinksFilter.h.

SeedProbaRegionConstIteratorType

template<typename TInput , typename TOutput >

typedef itk::ImageRegionConstIterator< TSeedProba > anima::TLinksFilter< TInput, TOutput >::SeedProbaRegionConstIteratorType

Definition at line 51 of file animaTLinksFilter.h.

Self

template<typename TInput , typename TOutput >

typedef TLinksFilter anima::TLinksFilter< TInput, TOutput >::Self

Standard class typedefs.

Definition at line 27 of file animaTLinksFilter.h.

Superclass

template<typename TInput , typename TOutput >

typedef itk::ImageToImageFilter< TInput ,TOutput > anima::TLinksFilter< TInput, TOutput >::Superclass

Definition at line 28 of file animaTLinksFilter.h.

TSeedMask

template<typename TInput , typename TOutput >

typedef itk::Image<PixelTypeUC,3> anima::TLinksFilter< TInput, TOutput >::TSeedMask

Definition at line 54 of file animaTLinksFilter.h.

TSeedMaskPointer

template<typename TInput , typename TOutput >

typedef TSeedMask::Pointer anima::TLinksFilter< TInput, TOutput >::TSeedMaskPointer

Definition at line 55 of file animaTLinksFilter.h.

TSeedProba

template<typename TInput , typename TOutput >

typedef itk::Image<PixelTypeD,3> anima::TLinksFilter< TInput, TOutput >::TSeedProba

Definition at line 50 of file animaTLinksFilter.h.

Constructor & Destructor Documentation

TLinksFilter()

template<typename TInput , typename TOutput >

anima::TLinksFilter< TInput, TOutput >::TLinksFilter ( )

inlineprotected

Definition at line 105 of file animaTLinksFilter.h.

References anima::TLinksFilter< TInput, TOutput >::MakeOutput(), and singleGaussianTLink.

~TLinksFilter()

template<typename TInput , typename TOutput >

virtual anima::TLinksFilter< TInput, TOutput >::~TLinksFilter ( )

inlineprotectedvirtual

Definition at line 125 of file animaTLinksFilter.h.

References anima::TLinksFilter< TInput, TOutput >::computeSingleGaussian(), anima::TLinksFilter< TInput, TOutput >::computeSingleGaussianSeeds(), anima::TLinksFilter< TInput, TOutput >::computeStrem(), anima::TLinksFilter< TInput, TOutput >::GenerateData(), anima::TLinksFilter< TInput, TOutput >::GetInputSeedSinksMask(), anima::TLinksFilter< TInput, TOutput >::GetInputSeedSinksProba(), anima::TLinksFilter< TInput, TOutput >::GetInputSeedSourcesMask(), anima::TLinksFilter< TInput, TOutput >::GetInputSeedSourcesProba(), and anima::TLinksFilter< TInput, TOutput >::MakeOutput().

Member Function Documentation

computeSingleGaussian()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::computeSingleGaussian ( )

protected

Definition at line 208 of file animaTLinksFilter.hxx.

References anima::TLinksFilter< TInput, TOutput >::computeSingleGaussianSeeds().

Referenced by anima::TLinksFilter< TInput, TOutput >::computeStrem(), and anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

computeSingleGaussianSeeds()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::computeSingleGaussianSeeds ( TSeedMask::ConstPointer  seedMask, OutputImagePointer  output, double  multiVar, TSeedMask::ConstPointer  seedMaskOpp = ITK_NULLPTR  )

protected

Definition at line 225 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::computeSingleGaussian(), and anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

computeStrem()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::computeStrem ( )

protected

Definition at line 183 of file animaTLinksFilter.hxx.

References anima::TLinksFilter< TInput, TOutput >::computeSingleGaussian().

Referenced by anima::TLinksFilter< TInput, TOutput >::GenerateData(), and anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

CreateAnother()

template<typename TInput , typename TOutput >

virtual::itk::LightObject::Pointer anima::TLinksFilter< TInput, TOutput >::CreateAnother

(

void

)

const

GenerateData()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::GenerateData ( )

protected

Definition at line 123 of file animaTLinksFilter.hxx.

References anima::TLinksFilter< TInput, TOutput >::computeStrem(), singleGaussianTLink, and stremTLink.

Referenced by anima::TLinksFilter< TInput, TOutput >::GetOutputSinks(), and anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

GetAlpha()

template<typename TInput , typename TOutput >

virtual double anima::TLinksFilter< TInput, TOutput >::GetAlpha ( )

virtual

GetInputSeedSinksMask()

template<typename TInput , typename TOutput >

itk::Image< unsigned char, 3 >::ConstPointer anima::TLinksFilter< TInput, TOutput >::GetInputSeedSinksMask ( )

protected

Definition at line 66 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

GetInputSeedSinksProba()

template<typename TInput , typename TOutput >

itk::Image< double, 3 >::ConstPointer anima::TLinksFilter< TInput, TOutput >::GetInputSeedSinksProba ( )

protected

Definition at line 80 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

GetInputSeedSourcesMask()

template<typename TInput , typename TOutput >

itk::Image< unsigned char, 3 >::ConstPointer anima::TLinksFilter< TInput, TOutput >::GetInputSeedSourcesMask ( )

protected

Definition at line 59 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

GetInputSeedSourcesProba()

template<typename TInput , typename TOutput >

itk::Image< double, 3 >::ConstPointer anima::TLinksFilter< TInput, TOutput >::GetInputSeedSourcesProba ( )

protected

Definition at line 73 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

GetMultiVarSinks()

template<typename TInput , typename TOutput >

virtual double anima::TLinksFilter< TInput, TOutput >::GetMultiVarSinks ( )

virtual

GetMultiVarSources()

template<typename TInput , typename TOutput >

virtual double anima::TLinksFilter< TInput, TOutput >::GetMultiVarSources ( )

virtual

GetNameOfClass()

template<typename TInput , typename TOutput >

virtual const char* anima::TLinksFilter< TInput, TOutput >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

GetNbModalities()

template<typename TInput , typename TOutput >

virtual unsigned int anima::TLinksFilter< TInput, TOutput >::GetNbModalities ( )

virtual

GetOutputSinks()

template<typename TInput , typename TOutput >

TOutput * anima::TLinksFilter< TInput, TOutput >::GetOutputSinks

(

)

Definition at line 114 of file animaTLinksFilter.hxx.

References anima::TLinksFilter< TInput, TOutput >::GenerateData().

Referenced by anima::TLinksFilter< TInput, TOutput >::SetTLinkMode().

GetOutputSources()

template<typename TInput , typename TOutput >

TOutput * anima::TLinksFilter< TInput, TOutput >::GetOutputSources

(

)

Definition at line 108 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::SetTLinkMode().

GetTLinkMode()

template<typename TInput , typename TOutput >

TLinkMode anima::TLinksFilter< TInput, TOutput >::GetTLinkMode ( )

inline

Definition at line 74 of file animaTLinksFilter.h.

GetVerbose()

template<typename TInput , typename TOutput >

virtual bool anima::TLinksFilter< TInput, TOutput >::GetVerbose ( )

virtual

MakeOutput()

template<typename TInput , typename TOutput >

itk::DataObject::Pointer anima::TLinksFilter< TInput, TOutput >::MakeOutput ( unsigned int  idx )

protected

Create the Output

Definition at line 87 of file animaTLinksFilter.hxx.

Referenced by anima::TLinksFilter< TInput, TOutput >::TLinksFilter(), and anima::TLinksFilter< TInput, TOutput >::~TLinksFilter().

New()

template<typename TInput , typename TOutput >

static Pointer anima::TLinksFilter< TInput, TOutput >::New ( )

static

Method for creation through the object factory.

Referenced by anima::GcStremMsLesionsSegmentationFilter< TInputImage >::GcStremMsLesionsSegmentationFilter(), and anima::GraphCutFilter< TInput, TOutput >::GraphCutFilter().

SetAlpha()

template<typename TInput , typename TOutput >

virtual void anima::TLinksFilter< TInput, TOutput >::SetAlpha ( double  _arg )

virtual

SetInputImage()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetInputImage	(	unsigned int	i,
		const TInput *	image
	)

The mri images.

Definition at line 10 of file animaTLinksFilter.hxx.

SetInputSeedSinksMask()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetInputSeedSinksMask

(

const TSeedMask *

mask

)

Definition at line 35 of file animaTLinksFilter.hxx.

SetInputSeedSinksProba()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetInputSeedSinksProba

(

const TSeedProba *

mask

)

Definition at line 51 of file animaTLinksFilter.hxx.

SetInputSeedSourcesMask()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetInputSeedSourcesMask

(

const TSeedMask *

mask

)

probabilities containing the seeds for the object and the background or binary masks containing the seeds for the object and the background

Definition at line 27 of file animaTLinksFilter.hxx.

SetInputSeedSourcesProba()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetInputSeedSourcesProba

(

const TSeedProba *

mask

)

Definition at line 43 of file animaTLinksFilter.hxx.

SetMultiVarSinks()

template<typename TInput , typename TOutput >

virtual void anima::TLinksFilter< TInput, TOutput >::SetMultiVarSinks ( double  _arg )

virtual

SetMultiVarSources()

template<typename TInput , typename TOutput >

virtual void anima::TLinksFilter< TInput, TOutput >::SetMultiVarSources ( double  _arg )

virtual

SetNbModalities()

template<typename TInput , typename TOutput >

virtual void anima::TLinksFilter< TInput, TOutput >::SetNbModalities ( unsigned int  _arg )

virtual

SetTLinkMode()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetTLinkMode ( TLinkMode  m )

inline

Definition at line 75 of file animaTLinksFilter.h.

References anima::TLinksFilter< TInput, TOutput >::GetOutputSinks(), and anima::TLinksFilter< TInput, TOutput >::GetOutputSources().

SetTol()

template<typename TInput , typename TOutput >

void anima::TLinksFilter< TInput, TOutput >::SetTol ( const double  tol )

inline

Definition at line 80 of file animaTLinksFilter.h.

SetVerbose()

template<typename TInput , typename TOutput >

virtual void anima::TLinksFilter< TInput, TOutput >::SetVerbose ( bool  _arg )

virtual

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The documentation for this class was generated from the following files:

• animaTLinksFilter.h
• animaTLinksFilter.hxx