anima::LowMemoryNLMeansPatientToGroupComparisonBridge Class Reference

#include <animaLowMemNLMeansPatientToGroupComparisonBridge.h>

Public Types
typedef anima::ImageDataSplitter< InputImageType >	ImageSplitterType
typedef NLMeansPatientToGroupComparisonImageFilter< double >::InputImageType	InputImageType
typedef anima::NLMeansPatientToGroupComparisonImageFilter< double >	MainFilterType
typedef itk::Image< unsigned char, 3 >	MaskImageType
typedef NLMeansPatientToGroupComparisonImageFilter< double >::OutputImageRegionType	OutputImageRegionType
typedef NLMeansPatientToGroupComparisonImageFilter< double >::OutputImageType	OutputImageType
typedef anima::ImageDataSplitter< OutputImageType >	ScalarImageSplitterType

Public Member Functions
void	BuildAndWrite (OutputImageType *tmpIm, std::string resName, OutputImageType::RegionType finalROI)
std::string	GetNameOfClass ()
	LowMemoryNLMeansPatientToGroupComparisonBridge ()
void	SetBetaParameter (double beta)
void	SetComputationMask (std::string &cMask)
void	SetDatabaseCovarianceDistanceAverageFileName (std::string &fileName)
void	SetDatabaseCovarianceDistanceStdFileName (std::string &fileName)
void	SetDatabaseMeanDistanceAverageFileName (std::string &fileName)
void	SetDatabaseMeanDistanceStdFileName (std::string &fileName)
void	SetDatabaseNames (std::string &fileList)
void	SetMeanThreshold (double weight)
void	SetNbSplits (unsigned int nbSplits)
void	SetNumberOfWorkUnits (unsigned int nbT)
void	SetOutputNPatchesName (std::string &pref)
void	SetOutputPValName (std::string &pref)
void	SetOutputScoreName (std::string &pref)
void	SetPatchHalfSize (unsigned int patchHalf)
void	SetSearchNeighborhood (unsigned int searchNeigh)
void	SetSearchStepSize (unsigned int searchStep)
void	SetTestFileName (std::string &fileName)
void	SetVarianceThreshold (double weight)
void	SetWeightThreshold (double weight)
void	Update (int specificSplitToDo=-1, bool genOutputDescriptionData=false)
	~LowMemoryNLMeansPatientToGroupComparisonBridge ()

Detailed Description

Definition at line 9 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

Member Typedef Documentation

ImageSplitterType

typedef anima::ImageDataSplitter< InputImageType > anima::LowMemoryNLMeansPatientToGroupComparisonBridge::ImageSplitterType

Definition at line 16 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

InputImageType

typedef NLMeansPatientToGroupComparisonImageFilter<double>::InputImageType anima::LowMemoryNLMeansPatientToGroupComparisonBridge::InputImageType

Definition at line 12 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

MainFilterType

typedef anima::NLMeansPatientToGroupComparisonImageFilter<double> anima::LowMemoryNLMeansPatientToGroupComparisonBridge::MainFilterType

Definition at line 18 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

MaskImageType

typedef itk::Image<unsigned char,3> anima::LowMemoryNLMeansPatientToGroupComparisonBridge::MaskImageType

Definition at line 19 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

OutputImageRegionType

typedef NLMeansPatientToGroupComparisonImageFilter<double>::OutputImageRegionType anima::LowMemoryNLMeansPatientToGroupComparisonBridge::OutputImageRegionType

Definition at line 14 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

OutputImageType

typedef NLMeansPatientToGroupComparisonImageFilter<double>::OutputImageType anima::LowMemoryNLMeansPatientToGroupComparisonBridge::OutputImageType

Definition at line 13 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

ScalarImageSplitterType

typedef anima::ImageDataSplitter< OutputImageType > anima::LowMemoryNLMeansPatientToGroupComparisonBridge::ScalarImageSplitterType

Definition at line 17 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

Constructor & Destructor Documentation

LowMemoryNLMeansPatientToGroupComparisonBridge()

anima::LowMemoryNLMeansPatientToGroupComparisonBridge::LowMemoryNLMeansPatientToGroupComparisonBridge

(

)

Definition at line 8 of file animaLowMemNLMeansPatientToGroupComparisonBridge.cxx.

~LowMemoryNLMeansPatientToGroupComparisonBridge()

anima::LowMemoryNLMeansPatientToGroupComparisonBridge::~LowMemoryNLMeansPatientToGroupComparisonBridge

(

)

Definition at line 32 of file animaLowMemNLMeansPatientToGroupComparisonBridge.cxx.

Member Function Documentation

BuildAndWrite()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::BuildAndWrite	(	OutputImageType *	tmpIm,
		std::string	resName,
		OutputImageType::RegionType	finalROI
	)

Definition at line 261 of file animaLowMemNLMeansPatientToGroupComparisonBridge.cxx.

References anima::computeAverageLocalCovariance(), anima::ImageDataSplitter< TInputImage >::GetFileName(), and anima::ImageDataSplitter< TInputImage >::GetNbImages().

Referenced by SetSearchNeighborhood(), and Update().

GetNameOfClass()

std::string anima::LowMemoryNLMeansPatientToGroupComparisonBridge::GetNameOfClass ( )

inline

Definition at line 36 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetBetaParameter()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetBetaParameter ( double  beta )

inline

Definition at line 54 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetComputationMask()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetComputationMask

(

std::string &

cMask

)

Definition at line 53 of file animaLowMemNLMeansPatientToGroupComparisonBridge.cxx.

References anima::ImageDataSplitter< TInputImage >::SetComputationMask().

Referenced by main().

SetDatabaseCovarianceDistanceAverageFileName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetDatabaseCovarianceDistanceAverageFileName ( std::string &  fileName )

inline

Definition at line 38 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetUniqueFileName().

SetDatabaseCovarianceDistanceStdFileName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetDatabaseCovarianceDistanceStdFileName ( std::string &  fileName )

inline

Definition at line 39 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetUniqueFileName().

SetDatabaseMeanDistanceAverageFileName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetDatabaseMeanDistanceAverageFileName ( std::string &  fileName )

inline

Definition at line 40 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetUniqueFileName().

SetDatabaseMeanDistanceStdFileName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetDatabaseMeanDistanceStdFileName ( std::string &  fileName )

inline

Definition at line 41 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetUniqueFileName().

SetDatabaseNames()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetDatabaseNames ( std::string &  fileList )

inline

Definition at line 26 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetFileNames().

SetMeanThreshold()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetMeanThreshold ( double  weight )

inline

Definition at line 51 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetNbSplits()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetNbSplits ( unsigned int  nbSplits )

inline

Definition at line 47 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetNumberOfWorkUnits()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetNumberOfWorkUnits ( unsigned int  nbT )

inline

Definition at line 48 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetOutputNPatchesName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetOutputNPatchesName ( std::string &  pref )

inline

Definition at line 45 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetOutputPValName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetOutputPValName ( std::string &  pref )

inline

Definition at line 44 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetOutputScoreName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetOutputScoreName ( std::string &  pref )

inline

Definition at line 43 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetPatchHalfSize()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetPatchHalfSize ( unsigned int  patchHalf )

inline

Definition at line 56 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetSearchNeighborhood()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetSearchNeighborhood ( unsigned int  searchNeigh )

inline

Definition at line 58 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References BuildAndWrite(), and Update().

SetSearchStepSize()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetSearchStepSize ( unsigned int  searchStep )

inline

Definition at line 57 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetTestFileName()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetTestFileName ( std::string &  fileName )

inline

Definition at line 31 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

References anima::ImageDataSplitter< TInputImage >::SetUniqueFileName().

SetVarianceThreshold()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetVarianceThreshold ( double  weight )

inline

Definition at line 52 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

SetWeightThreshold()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::SetWeightThreshold ( double  weight )

inline

Definition at line 50 of file animaLowMemNLMeansPatientToGroupComparisonBridge.h.

Update()

void anima::LowMemoryNLMeansPatientToGroupComparisonBridge::Update	(	int	specificSplitToDo = -1,
		bool	genOutputDescriptionData = false
	)

Definition at line 66 of file animaLowMemNLMeansPatientToGroupComparisonBridge.cxx.

References BuildAndWrite(), anima::ImageDataSplitter< TInputImage >::EmptyMask(), anima::ImageDataSplitter< TInputImage >::GetBlockRegionInsideMargin(), anima::ImageDataSplitter< TInputImage >::GetNbImages(), anima::ImageDataSplitter< TInputImage >::GetOutput(), anima::ImageDataSplitter< TInputImage >::GetSmallMaskWithMargin(), anima::ImageDataSplitter< TInputImage >::GetSpecificBlockRegion(), anima::NLMeansPatientToGroupComparisonImageFilter< PixelScalarType >::New(), anima::ImageDataSplitter< TInputImage >::SetBlockIndex(), anima::ImageDataSplitter< TInputImage >::SetBlockMargin(), anima::ImageDataSplitter< TInputImage >::SetNumberOfBlocks(), and anima::ImageDataSplitter< TInputImage >::Update().

Referenced by SetSearchNeighborhood().

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The documentation for this class was generated from the following files:

• animaLowMemNLMeansPatientToGroupComparisonBridge.h
• animaLowMemNLMeansPatientToGroupComparisonBridge.cxx