ANIMA  4.0
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
anima::ImageClassifierFilter< TInput, TMask, TOutput > Class Template Reference

Classify each voxels into one of the given GMM classes. More...

#include <animaImageClassifierFilter.h>

+ Inheritance diagram for anima::ImageClassifierFilter< TInput, TMask, TOutput >:
+ Collaboration diagram for anima::ImageClassifierFilter< TInput, TMask, TOutput >:

Public Types

typedef itk::SmartPointer< const Self > ConstPointer
 
typedef itk::VariableSizeMatrix< NumericType > DoubleVariableSizeMatrixType
 
typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType > GaussianFunctionType
 
typedef itk::ImageRegionConstIterator< TInput > InputConstIteratorType
 
typedef TInput::ConstPointer InputImageConstPointer
 
typedef itk::ImageRegionConstIterator< TMask > MaskConstIteratorType
 
typedef itk::VariableLengthVector< double > MeasurementVectorType
 
typedef double NumericType
 
typedef TOutput::ConstPointer OutputImageConstPointer
 
typedef TOutput::Pointer OutputImagePointer
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef itk::ImageRegionIterator< TOutput > OutputIteratorType
 
typedef itk::SmartPointer< Self > Pointer
 
typedef ImageClassifierFilter Self
 
typedef itk::ImageToImageFilter< TInput, TOutput > Superclass
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
std::vector< double > GetAlphas ()
 
std::vector< GaussianFunctionType::Pointer > GetGaussiabModel ()
 
virtual const char * GetNameOfClass () const
 
virtual bool GetVerbose ()
 
void SetAlphas (std::vector< double > &model)
 
void SetGaussianModel (std::vector< GaussianFunctionType::Pointer > &model)
 
void SetInputImage1 (const TInput *image)
 
void SetInputImage2 (const TInput *image)
 
void SetInputImage3 (const TInput *image)
 
void SetInputImage4 (const TInput *image)
 
void SetInputImage5 (const TInput *image)
 
void SetMask (const TMask *mask)
 
void SetOutputFilename (std::string filename)
 
void SetTol (const double tol)
 
virtual void SetVerbose (bool _arg)
 
void WriteOutputs ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
 
TInput::ConstPointer GetInputImage1 ()
 
TInput::ConstPointer GetInputImage2 ()
 
TInput::ConstPointer GetInputImage3 ()
 
TInput::ConstPointer GetInputImage4 ()
 
TInput::ConstPointer GetInputImage5 ()
 
TMask::ConstPointer GetMask ()
 
 ImageClassifierFilter ()
 
double probability (DoubleVariableSizeMatrixType &point, GaussianFunctionType::Pointer model)
 
virtual ~ImageClassifierFilter ()
 

Detailed Description

template<typename TInput, typename TMask, typename TOutput = TInput>
class anima::ImageClassifierFilter< TInput, TMask, TOutput >

Classify each voxels into one of the given GMM classes.

Definition at line 15 of file animaImageClassifierFilter.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::SmartPointer<const Self> anima::ImageClassifierFilter< TInput, TMask, TOutput >::ConstPointer

Definition at line 23 of file animaImageClassifierFilter.h.

◆ DoubleVariableSizeMatrixType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::VariableSizeMatrix<NumericType> anima::ImageClassifierFilter< TInput, TMask, TOutput >::DoubleVariableSizeMatrixType

Definition at line 43 of file animaImageClassifierFilter.h.

◆ GaussianFunctionType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType > anima::ImageClassifierFilter< TInput, TMask, TOutput >::GaussianFunctionType

Definition at line 46 of file animaImageClassifierFilter.h.

◆ InputConstIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::ImageRegionConstIterator< TInput > anima::ImageClassifierFilter< TInput, TMask, TOutput >::InputConstIteratorType

Definition at line 33 of file animaImageClassifierFilter.h.

◆ InputImageConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::InputImageConstPointer

Image typedef support

Definition at line 32 of file animaImageClassifierFilter.h.

◆ MaskConstIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::ImageRegionConstIterator< TMask > anima::ImageClassifierFilter< TInput, TMask, TOutput >::MaskConstIteratorType

Mask typedef support

Definition at line 36 of file animaImageClassifierFilter.h.

◆ MeasurementVectorType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::VariableLengthVector<double> anima::ImageClassifierFilter< TInput, TMask, TOutput >::MeasurementVectorType

Definition at line 45 of file animaImageClassifierFilter.h.

◆ NumericType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef double anima::ImageClassifierFilter< TInput, TMask, TOutput >::NumericType

Definition at line 42 of file animaImageClassifierFilter.h.

◆ OutputImageConstPointer

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef TOutput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::OutputImageConstPointer

Definition at line 39 of file animaImageClassifierFilter.h.

◆ OutputImagePointer

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef TOutput::Pointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::OutputImagePointer

Definition at line 38 of file animaImageClassifierFilter.h.

◆ OutputImageRegionType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef Superclass::OutputImageRegionType anima::ImageClassifierFilter< TInput, TMask, TOutput >::OutputImageRegionType

Superclass typedefs.

Definition at line 66 of file animaImageClassifierFilter.h.

◆ OutputIteratorType

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::ImageRegionIterator< TOutput > anima::ImageClassifierFilter< TInput, TMask, TOutput >::OutputIteratorType

Definition at line 40 of file animaImageClassifierFilter.h.

◆ Pointer

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::SmartPointer<Self> anima::ImageClassifierFilter< TInput, TMask, TOutput >::Pointer

Definition at line 22 of file animaImageClassifierFilter.h.

◆ Self

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef ImageClassifierFilter anima::ImageClassifierFilter< TInput, TMask, TOutput >::Self

Standard class typedefs.

Definition at line 20 of file animaImageClassifierFilter.h.

◆ Superclass

template<typename TInput , typename TMask , typename TOutput = TInput>
typedef itk::ImageToImageFilter< TInput , TOutput > anima::ImageClassifierFilter< TInput, TMask, TOutput >::Superclass

Definition at line 21 of file animaImageClassifierFilter.h.

Constructor & Destructor Documentation

◆ ImageClassifierFilter()

template<typename TInput , typename TMask , typename TOutput = TInput>
anima::ImageClassifierFilter< TInput, TMask, TOutput >::ImageClassifierFilter ( )
inlineprotected

Definition at line 79 of file animaImageClassifierFilter.h.

◆ ~ImageClassifierFilter()

template<typename TInput , typename TMask , typename TOutput = TInput>
virtual anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter ( )
inlineprotectedvirtual

Definition at line 91 of file animaImageClassifierFilter.h.

References anima::ImageClassifierFilter< TInput, TMask, TOutput >::DynamicThreadedGenerateData(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage1(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage2(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage3(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage4(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage5(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetMask(), and anima::ImageClassifierFilter< TInput, TMask, TOutput >::probability().

Member Function Documentation

◆ CreateAnother()

template<typename TInput , typename TMask , typename TOutput = TInput>
virtual::itk::LightObject::Pointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::CreateAnother ( void  ) const

◆ DynamicThreadedGenerateData()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::DynamicThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread)
protected

Definition at line 114 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::WriteOutputs(), and anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetAlphas()

template<typename TInput , typename TMask , typename TOutput = TInput>
std::vector<double> anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetAlphas ( )
inline

Definition at line 76 of file animaImageClassifierFilter.h.

◆ GetGaussiabModel()

template<typename TInput , typename TMask , typename TOutput = TInput>
std::vector<GaussianFunctionType::Pointer> anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetGaussiabModel ( )
inline

Definition at line 75 of file animaImageClassifierFilter.h.

◆ GetInputImage1()

template<typename TInput , typename TMask , typename TOutput >
TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage1 ( )
protected

Definition at line 59 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetInputImage2()

template<typename TInput , typename TMask , typename TOutput >
TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage2 ( )
protected

Definition at line 73 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetInputImage3()

template<typename TInput , typename TMask , typename TOutput >
TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage3 ( )
protected

Definition at line 80 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetInputImage4()

template<typename TInput , typename TMask , typename TOutput >
TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage4 ( )
protected

Definition at line 87 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetInputImage5()

template<typename TInput , typename TMask , typename TOutput >
TInput::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetInputImage5 ( )
protected

Definition at line 94 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetMask()

template<typename TInput , typename TMask , typename TOutput >
TMask::ConstPointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetMask ( )
protected

Definition at line 66 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ GetNameOfClass()

template<typename TInput , typename TMask , typename TOutput = TInput>
virtual const char* anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

◆ GetVerbose()

template<typename TInput , typename TMask , typename TOutput = TInput>
virtual bool anima::ImageClassifierFilter< TInput, TMask, TOutput >::GetVerbose ( )
virtual

◆ New()

template<typename TInput , typename TMask , typename TOutput = TInput>
static Pointer anima::ImageClassifierFilter< TInput, TMask, TOutput >::New ( )
static

Method for creation through the object factory.

◆ probability()

template<typename TInput , typename TMask , typename TOutput >
double anima::ImageClassifierFilter< TInput, TMask, TOutput >::probability ( DoubleVariableSizeMatrixType &  point,
GaussianFunctionType::Pointer  model 
)
protected

Definition at line 171 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::~ImageClassifierFilter().

◆ SetAlphas()

template<typename TInput , typename TMask , typename TOutput = TInput>
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetAlphas ( std::vector< double > &  model)
inline

Definition at line 73 of file animaImageClassifierFilter.h.

◆ SetGaussianModel()

template<typename TInput , typename TMask , typename TOutput = TInput>
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetGaussianModel ( std::vector< GaussianFunctionType::Pointer > &  model)
inline

Definition at line 72 of file animaImageClassifierFilter.h.

◆ SetInputImage1()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage1 ( const TInput *  image)

The mri images.

Definition at line 9 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetInputImage2()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage2 ( const TInput *  image)

Definition at line 22 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetInputImage3()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage3 ( const TInput *  image)

Definition at line 31 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetInputImage4()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage4 ( const TInput *  image)

Definition at line 39 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetInputImage5()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage5 ( const TInput *  image)

Definition at line 48 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetMask()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetMask ( const TMask *  mask)

mask in which the segmentation will be performed

Definition at line 16 of file animaImageClassifierFilter.hxx.

Referenced by anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol().

◆ SetOutputFilename()

template<typename TInput , typename TMask , typename TOutput = TInput>
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetOutputFilename ( std::string  filename)
inline

Definition at line 74 of file animaImageClassifierFilter.h.

◆ SetTol()

template<typename TInput , typename TMask , typename TOutput = TInput>
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetTol ( const double  tol)
inline

Definition at line 48 of file animaImageClassifierFilter.h.

References anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage1(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage2(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage3(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage4(), anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetInputImage5(), and anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetMask().

◆ SetVerbose()

template<typename TInput , typename TMask , typename TOutput = TInput>
virtual void anima::ImageClassifierFilter< TInput, TMask, TOutput >::SetVerbose ( bool  _arg)
virtual

◆ WriteOutputs()

template<typename TInput , typename TMask , typename TOutput >
void anima::ImageClassifierFilter< TInput, TMask, TOutput >::WriteOutputs ( )

Definition at line 102 of file animaImageClassifierFilter.hxx.

References anima::ImageClassifierFilter< TInput, TMask, TOutput >::DynamicThreadedGenerateData().

The documentation for this class was generated from the following files:
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