#include <animaPyramidalSymmetryBridge.h>

Inheritance diagram for anima::PyramidalSymmetryBridge< PixelType, ScalarType >:

Collaboration diagram for anima::PyramidalSymmetryBridge< PixelType, ScalarType >:

Public Types
typedef BaseTransformType::Pointer	BaseTransformPointer

typedef itk::AffineTransform< ScalarType, 3 >	BaseTransformType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef InputImageType::Pointer	InputImagePointer

typedef itk::Image< PixelType, 3 >	InputImageType

typedef TransformType::MatrixType	MatrixType

typedef TransformType::OffsetType	OffsetType

typedef OutputImageType::Pointer	OutputImagePointer

typedef itk::Image< double, 3 >	OutputImageType

typedef TransformType::ParametersType	ParametersType

typedef itk::SmartPointer< Self >	Pointer

typedef PyramidType::Pointer	PyramidPointer

typedef itk::MultiResolutionPyramidImageFilter< InputImageType, OutputImageType >	PyramidType

typedef PyramidalSymmetryBridge	Self

typedef itk::ProcessObject	Superclass

typedef TransformType::Pointer	TransformPointer

typedef anima::SymmetryPlaneTransform< ScalarType >	TransformType

Public Member Functions
void	ComputeRealignTransform (itk::Vector< double, InputImageType::ImageDimension > centralPoint, typename InputImageType::PointType &centerReal, ParametersType &imageParams)

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

std::string	GetFixedfile ()

int	GetHistogramSize ()

Metric	GetMetric ()

virtual const char *	GetNameOfClass () const

int	GetNumberOfPyramidLevels ()

int	GetOptimizerMaxIterations ()

OutputImagePointer	GetOutputImage ()

BaseTransformPointer	GetOutputRealignTransform ()

std::string	GetOutputRealignTransformFile ()

TransformPointer	GetOutputTransform ()

std::string	GetOutputTransformFile ()

std::string	GetResultfile ()

double	GetUpperBoundAngle ()

double	GetUpperBoundDistance ()

void	ParseParameters (int argc, const char **argv)

void	SaveRealignTransformFile (void)

void	SaveResultFile (void)

void	SaveTransformFile (void)

void	SetFixedfile (std::string fixedfile)

void	SetFloatingImage (InputImagePointer FloatingImage)

void	SetHistogramSize (int histogramSize)

void	SetMetric (Metric metric)

void	SetNumberOfPyramidLevels (int numberOfPyramidLevels)

void	SetOptimizerMaxIterations (int optMaxIterations)

void	SetOutputRealignTransformFile (std::string outputRealignTransformFile)

void	SetOutputTransformFile (std::string outputTransformFile)

void	SetProgressCallback (itk::CStyleCommand::Pointer callback)

void	SetReferenceImage (InputImagePointer referenceImage)

void	SetResultFile (std::string resultFile)

void	SetUpperBoundAngle (double val)

void	SetUpperBoundDistance (double val)

void	Update () ITK_OVERRIDE

void	WriteOutputs ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	PyramidalSymmetryBridge ()

void	SetupPyramids ()

virtual	~PyramidalSymmetryBridge ()

Detailed Description

template<class PixelType = double, typename ScalarType = double>
class anima::PyramidalSymmetryBridge< PixelType, ScalarType >

Definition at line 21 of file animaPyramidalSymmetryBridge.h.

Member Typedef Documentation

◆ BaseTransformPointer

template<class PixelType = double, typename ScalarType = double>

typedef BaseTransformType::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::BaseTransformPointer

Definition at line 36 of file animaPyramidalSymmetryBridge.h.

◆ BaseTransformType

template<class PixelType = double, typename ScalarType = double>

typedef itk::AffineTransform<ScalarType,3> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::BaseTransformType

Definition at line 35 of file animaPyramidalSymmetryBridge.h.

◆ ConstPointer

template<class PixelType = double, typename ScalarType = double>

typedef itk::SmartPointer<const Self> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::ConstPointer

Definition at line 46 of file animaPyramidalSymmetryBridge.h.

◆ InputImagePointer

template<class PixelType = double, typename ScalarType = double>

typedef InputImageType::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::InputImagePointer

Definition at line 26 of file animaPyramidalSymmetryBridge.h.

◆ InputImageType

template<class PixelType = double, typename ScalarType = double>

typedef itk::Image<PixelType,3> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::InputImageType

Definition at line 24 of file animaPyramidalSymmetryBridge.h.

◆ MatrixType

template<class PixelType = double, typename ScalarType = double>

typedef TransformType::MatrixType anima::PyramidalSymmetryBridge< PixelType, ScalarType >::MatrixType

Definition at line 32 of file animaPyramidalSymmetryBridge.h.

◆ OffsetType

template<class PixelType = double, typename ScalarType = double>

typedef TransformType::OffsetType anima::PyramidalSymmetryBridge< PixelType, ScalarType >::OffsetType

Definition at line 33 of file animaPyramidalSymmetryBridge.h.

◆ OutputImagePointer

template<class PixelType = double, typename ScalarType = double>

typedef OutputImageType::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::OutputImagePointer

Definition at line 27 of file animaPyramidalSymmetryBridge.h.

◆ OutputImageType

template<class PixelType = double, typename ScalarType = double>

typedef itk::Image<double,3> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::OutputImageType

Definition at line 25 of file animaPyramidalSymmetryBridge.h.

◆ ParametersType

template<class PixelType = double, typename ScalarType = double>

typedef TransformType::ParametersType anima::PyramidalSymmetryBridge< PixelType, ScalarType >::ParametersType

Definition at line 31 of file animaPyramidalSymmetryBridge.h.

◆ Pointer

template<class PixelType = double, typename ScalarType = double>

typedef itk::SmartPointer<Self> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::Pointer

Definition at line 45 of file animaPyramidalSymmetryBridge.h.

◆ PyramidPointer

template<class PixelType = double, typename ScalarType = double>

typedef PyramidType::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::PyramidPointer

Definition at line 39 of file animaPyramidalSymmetryBridge.h.

◆ PyramidType

template<class PixelType = double, typename ScalarType = double>

typedef itk::MultiResolutionPyramidImageFilter<InputImageType,OutputImageType> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::PyramidType

Definition at line 38 of file animaPyramidalSymmetryBridge.h.

◆ Self

template<class PixelType = double, typename ScalarType = double>

typedef PyramidalSymmetryBridge anima::PyramidalSymmetryBridge< PixelType, ScalarType >::Self

SmartPointer typedef support

Definition at line 42 of file animaPyramidalSymmetryBridge.h.

◆ Superclass

template<class PixelType = double, typename ScalarType = double>

typedef itk::ProcessObject anima::PyramidalSymmetryBridge< PixelType, ScalarType >::Superclass

Definition at line 43 of file animaPyramidalSymmetryBridge.h.

◆ TransformPointer

template<class PixelType = double, typename ScalarType = double>

typedef TransformType::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::TransformPointer

Definition at line 30 of file animaPyramidalSymmetryBridge.h.

◆ TransformType

template<class PixelType = double, typename ScalarType = double>

typedef anima::SymmetryPlaneTransform<ScalarType> anima::PyramidalSymmetryBridge< PixelType, ScalarType >::TransformType

Definition at line 29 of file animaPyramidalSymmetryBridge.h.

Constructor & Destructor Documentation

◆ PyramidalSymmetryBridge()

template<class PixelType = double, typename ScalarType = double>

anima::PyramidalSymmetryBridge< PixelType, ScalarType >::PyramidalSymmetryBridge ( )

inlineprotected

Definition at line 112 of file animaPyramidalSymmetryBridge.h.

References MeanSquares, and anima::SymmetryPlaneTransform< TScalarType >::New().

◆ ~PyramidalSymmetryBridge()

template<class PixelType = double, typename ScalarType = double>

virtual anima::PyramidalSymmetryBridge< PixelType, ScalarType >::~PyramidalSymmetryBridge ( )

inlineprotectedvirtual

Definition at line 139 of file animaPyramidalSymmetryBridge.h.

References anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetupPyramids().

Member Function Documentation

◆ ComputeRealignTransform()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::ComputeRealignTransform	(	itk::Vector< double, InputImageType::ImageDimension >	centralPoint,
		typename InputImageType::PointType &	centerReal,
		ParametersType &	imageParams
	)

Definition at line 231 of file animaPyramidalSymmetryBridge.hxx.

◆ CreateAnother()

template<class PixelType = double, typename ScalarType = double>

virtual::itk::LightObject::Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::CreateAnother ( void ) const

◆ GetFixedfile()

template<class PixelType = double, typename ScalarType = double>

std::string anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetFixedfile ( )

inline

Definition at line 88 of file animaPyramidalSymmetryBridge.h.

◆ GetHistogramSize()

template<class PixelType = double, typename ScalarType = double>

int anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetHistogramSize ( )

inline

Definition at line 67 of file animaPyramidalSymmetryBridge.h.

◆ GetMetric()

template<class PixelType = double, typename ScalarType = double>

Metric anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetMetric ( )

inline

Definition at line 61 of file animaPyramidalSymmetryBridge.h.

◆ GetNameOfClass()

template<class PixelType = double, typename ScalarType = double>

virtual const char* anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetNameOfClass ( ) const

virtual

◆ GetNumberOfPyramidLevels()

template<class PixelType = double, typename ScalarType = double>

int anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetNumberOfPyramidLevels ( )

inline

Definition at line 76 of file animaPyramidalSymmetryBridge.h.

◆ GetOptimizerMaxIterations()

template<class PixelType = double, typename ScalarType = double>

int anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOptimizerMaxIterations ( )

inline

Definition at line 64 of file animaPyramidalSymmetryBridge.h.

◆ GetOutputImage()

template<class PixelType = double, typename ScalarType = double>

OutputImagePointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOutputImage ( )

inline

Definition at line 103 of file animaPyramidalSymmetryBridge.h.

◆ GetOutputRealignTransform()

template<class PixelType = double, typename ScalarType = double>

BaseTransformPointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOutputRealignTransform ( )

inline

Definition at line 109 of file animaPyramidalSymmetryBridge.h.

◆ GetOutputRealignTransformFile()

template<class PixelType = double, typename ScalarType = double>

std::string anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOutputRealignTransformFile ( )

inline

Definition at line 82 of file animaPyramidalSymmetryBridge.h.

◆ GetOutputTransform()

template<class PixelType = double, typename ScalarType = double>

TransformPointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOutputTransform ( )

inline

Definition at line 106 of file animaPyramidalSymmetryBridge.h.

◆ GetOutputTransformFile()

template<class PixelType = double, typename ScalarType = double>

std::string anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetOutputTransformFile ( )

inline

Definition at line 85 of file animaPyramidalSymmetryBridge.h.

◆ GetResultfile()

template<class PixelType = double, typename ScalarType = double>

std::string anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetResultfile ( )

inline

Definition at line 79 of file animaPyramidalSymmetryBridge.h.

◆ GetUpperBoundAngle()

template<class PixelType = double, typename ScalarType = double>

double anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetUpperBoundAngle ( )

inline

Definition at line 73 of file animaPyramidalSymmetryBridge.h.

◆ GetUpperBoundDistance()

template<class PixelType = double, typename ScalarType = double>

double anima::PyramidalSymmetryBridge< PixelType, ScalarType >::GetUpperBoundDistance ( )

inline

Definition at line 70 of file animaPyramidalSymmetryBridge.h.

◆ New()

template<class PixelType = double, typename ScalarType = double>

static Pointer anima::PyramidalSymmetryBridge< PixelType, ScalarType >::New ( )

static

◆ ParseParameters()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::ParseParameters	(	int	argc,
		const char **	argv
	)

◆ SaveRealignTransformFile()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveRealignTransformFile ( void )

Definition at line 439 of file animaPyramidalSymmetryBridge.hxx.

Referenced by anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetProgressCallback().

◆ SaveResultFile()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveResultFile ( void )

Definition at line 409 of file animaPyramidalSymmetryBridge.hxx.

Referenced by anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetProgressCallback().

◆ SaveTransformFile()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveTransformFile ( void )

Definition at line 420 of file animaPyramidalSymmetryBridge.hxx.

Referenced by anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetProgressCallback().

◆ SetFixedfile()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetFixedfile ( std::string fixedfile )

inline

Definition at line 89 of file animaPyramidalSymmetryBridge.h.

◆ SetFloatingImage()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetFloatingImage ( InputImagePointer FloatingImage )

inline

Definition at line 93 of file animaPyramidalSymmetryBridge.h.

◆ SetHistogramSize()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetHistogramSize ( int histogramSize )

inline

Definition at line 68 of file animaPyramidalSymmetryBridge.h.

◆ SetMetric()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetMetric ( Metric metric )

inline

Definition at line 62 of file animaPyramidalSymmetryBridge.h.

◆ SetNumberOfPyramidLevels()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetNumberOfPyramidLevels ( int numberOfPyramidLevels )

inline

Definition at line 77 of file animaPyramidalSymmetryBridge.h.

◆ SetOptimizerMaxIterations()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetOptimizerMaxIterations ( int optMaxIterations )

inline

Definition at line 65 of file animaPyramidalSymmetryBridge.h.

◆ SetOutputRealignTransformFile()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetOutputRealignTransformFile ( std::string outputRealignTransformFile )

inline

Definition at line 83 of file animaPyramidalSymmetryBridge.h.

◆ SetOutputTransformFile()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetOutputTransformFile ( std::string outputTransformFile )

inline

Definition at line 86 of file animaPyramidalSymmetryBridge.h.

◆ SetProgressCallback()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetProgressCallback ( itk::CStyleCommand::Pointer callback )

inline

Definition at line 95 of file animaPyramidalSymmetryBridge.h.

References anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveRealignTransformFile(), anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveResultFile(), and anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SaveTransformFile().

◆ SetReferenceImage()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetReferenceImage ( InputImagePointer referenceImage )

inline

Definition at line 91 of file animaPyramidalSymmetryBridge.h.

◆ SetResultFile()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetResultFile ( std::string resultFile )

inline

Definition at line 80 of file animaPyramidalSymmetryBridge.h.

◆ SetUpperBoundAngle()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetUpperBoundAngle ( double val )

inline

Definition at line 74 of file animaPyramidalSymmetryBridge.h.

◆ SetUpperBoundDistance()

template<class PixelType = double, typename ScalarType = double>

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetUpperBoundDistance ( double val )

inline

Definition at line 71 of file animaPyramidalSymmetryBridge.h.

◆ SetupPyramids()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::SetupPyramids ( )

protected

Definition at line 452 of file animaPyramidalSymmetryBridge.hxx.

Referenced by anima::PyramidalSymmetryBridge< PixelType, ScalarType >::~PyramidalSymmetryBridge().

◆ Update()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::Update ( )

Definition at line 24 of file animaPyramidalSymmetryBridge.hxx.

References MeanSquares, MutualInformation, and anima::TransformCartesianToSphericalCoordinates().

◆ WriteOutputs()

template<class PixelType , typename ScalarType >

void anima::PyramidalSymmetryBridge< PixelType, ScalarType >::WriteOutputs ( )

Definition at line 398 of file animaPyramidalSymmetryBridge.hxx.

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

template<class PixelType = double, typename ScalarType = double> class anima::PyramidalSymmetryBridge< PixelType, ScalarType >

Member Typedef Documentation

◆ BaseTransformPointer

◆ BaseTransformType

◆ ConstPointer

◆ InputImagePointer

◆ InputImageType

◆ MatrixType

◆ OffsetType

◆ OutputImagePointer

◆ OutputImageType

◆ ParametersType

◆ Pointer

◆ PyramidPointer

◆ PyramidType

◆ Self

◆ Superclass

◆ TransformPointer

◆ TransformType

Constructor & Destructor Documentation

◆ PyramidalSymmetryBridge()

◆ ~PyramidalSymmetryBridge()

Member Function Documentation

◆ ComputeRealignTransform()

◆ CreateAnother()

◆ GetFixedfile()

◆ GetHistogramSize()

◆ GetMetric()

◆ GetNameOfClass()

◆ GetNumberOfPyramidLevels()

◆ GetOptimizerMaxIterations()

◆ GetOutputImage()

◆ GetOutputRealignTransform()

◆ GetOutputRealignTransformFile()

◆ GetOutputTransform()

◆ GetOutputTransformFile()

◆ GetResultfile()

◆ GetUpperBoundAngle()

◆ GetUpperBoundDistance()

◆ New()

◆ ParseParameters()

◆ SaveRealignTransformFile()

◆ SaveResultFile()

◆ SaveTransformFile()

◆ SetFixedfile()

◆ SetFloatingImage()

◆ SetHistogramSize()

◆ SetMetric()

◆ SetNumberOfPyramidLevels()

◆ SetOptimizerMaxIterations()

◆ SetOutputRealignTransformFile()

◆ SetOutputTransformFile()

◆ SetProgressCallback()

◆ SetReferenceImage()

◆ SetResultFile()

◆ SetUpperBoundAngle()

◆ SetUpperBoundDistance()

◆ SetupPyramids()

◆ Update()

◆ WriteOutputs()

template<class PixelType = double, typename ScalarType = double>
class anima::PyramidalSymmetryBridge< PixelType, ScalarType >