ANIMA  4.0
Public Types | Public Member Functions | Protected Member Functions | List of all members
anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType > Class Template Reference

#include <animaNLMeansVectorPatchSearcher.h>

+ Inheritance diagram for anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >:
+ Collaboration diagram for anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >:

Public Types

typedef vnl_matrix< double > CovarianceType
 
typedef DataImageType::Pointer DataImagePointer
 
typedef Superclass::ImageRegionType ImageRegionType
 
typedef Superclass::IndexType IndexType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef itk::Image< unsigned char, 3 > MaskImageType
 
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > RefImageType
 
typedef anima::NonLocalPatchBaseSearcher< RefImageType > Superclass
 
typedef RefImageType::PixelType VectorType
 
- Public Types inherited from anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > ::Pointer ImagePointer
 
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > ::RegionType ImageRegionType
 
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > ::IndexType IndexType
 
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > ::PixelType PixelType
 
typedef itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > ::SizeType SizeType
 

Public Member Functions

 NLMeansVectorPatchSearcher ()
 
void SetBetaParameter (double arg)
 
void SetDatabaseCovarianceDistanceAverage (DataImagePointer &arg)
 
void SetDatabaseCovarianceDistanceStd (DataImagePointer &arg)
 
void SetDatabaseMeanDistanceAverage (DataImagePointer &arg)
 
void SetDatabaseMeanDistanceStd (DataImagePointer &arg)
 
void SetDataMask (MaskImageType *arg)
 
void SetMeanThreshold (double arg)
 
void SetVarianceThreshold (double arg)
 
virtual ~NLMeansVectorPatchSearcher ()
 
- Public Member Functions inherited from anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >
itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > * GetComparisonImage (unsigned int index)
 
virtual const std::vector< PixelType > & GetDatabaseSamples () const
 
virtual const std::vector< double > & GetDatabaseWeights () const
 
 itkGetObjectMacro (InputImage, itk::VectorImage< ImageScalarType, DataImageType::ImageDimension >) void AddComparisonImage(itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > *arg)
 
 NonLocalPatchBaseSearcher ()
 
void SetInputImage (itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > *arg)
 
void SetMaxAbsDisp (unsigned int arg)
 
void SetPatchHalfSize (unsigned int arg)
 
void SetSearchStepSize (unsigned int arg)
 
void SetWeightThreshold (double arg)
 
void UpdateAtPosition (const IndexType &dataIndex)
 
virtual ~NonLocalPatchBaseSearcher ()
 

Protected Member Functions

virtual void ComputeComparisonProperties (unsigned int index, ImageRegionType &movingPatch)
 
virtual void ComputeInputProperties (const IndexType &refIndex, ImageRegionType &refPatch)
 
virtual double ComputeWeightValue (unsigned int index, ImageRegionType &refPatch, ImageRegionType &movingPatch)
 
virtual bool TestPatchConformity (unsigned int index, const IndexType &refIndex, const IndexType &movingIndex)
 
- Protected Member Functions inherited from anima::NonLocalPatchBaseSearcher< itk::VectorImage< ImageScalarType, DataImageType::ImageDimension > >
virtual void ComputeComparisonProperties (unsigned int index, ImageRegionType &movingPatch)
 
virtual void ComputeInputProperties (const IndexType &refIndex, ImageRegionType &refPatch)
 
virtual double ComputeWeightValue (unsigned int index, ImageRegionType &refPatch, ImageRegionType &movingPatch)=0
 
virtual bool TestPatchConformity (unsigned int index, const IndexType &refIndex, const IndexType &movingIndex)=0
 

Detailed Description

template<class ImageScalarType, class DataImageType>
class anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >

Definition at line 10 of file animaNLMeansVectorPatchSearcher.h.

Member Typedef Documentation

◆ CovarianceType

template<class ImageScalarType , class DataImageType >
typedef vnl_matrix<double> anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::CovarianceType

Definition at line 16 of file animaNLMeansVectorPatchSearcher.h.

◆ DataImagePointer

template<class ImageScalarType , class DataImageType >
typedef DataImageType::Pointer anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::DataImagePointer

Definition at line 21 of file animaNLMeansVectorPatchSearcher.h.

◆ ImageRegionType

template<class ImageScalarType , class DataImageType >
typedef Superclass::ImageRegionType anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ImageRegionType

Definition at line 23 of file animaNLMeansVectorPatchSearcher.h.

◆ IndexType

template<class ImageScalarType , class DataImageType >
typedef Superclass::IndexType anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::IndexType

Definition at line 24 of file animaNLMeansVectorPatchSearcher.h.

◆ MaskImagePointer

template<class ImageScalarType , class DataImageType >
typedef MaskImageType::Pointer anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::MaskImagePointer

Definition at line 19 of file animaNLMeansVectorPatchSearcher.h.

◆ MaskImageType

template<class ImageScalarType , class DataImageType >
typedef itk::Image<unsigned char, 3> anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::MaskImageType

Definition at line 18 of file animaNLMeansVectorPatchSearcher.h.

◆ RefImageType

template<class ImageScalarType , class DataImageType >
typedef itk::VectorImage<ImageScalarType,DataImageType::ImageDimension> anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::RefImageType

Definition at line 14 of file animaNLMeansVectorPatchSearcher.h.

◆ Superclass

template<class ImageScalarType , class DataImageType >
typedef anima::NonLocalPatchBaseSearcher<RefImageType> anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::Superclass

Definition at line 22 of file animaNLMeansVectorPatchSearcher.h.

◆ VectorType

template<class ImageScalarType , class DataImageType >
typedef RefImageType::PixelType anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::VectorType

Definition at line 15 of file animaNLMeansVectorPatchSearcher.h.

Constructor & Destructor Documentation

◆ NLMeansVectorPatchSearcher()

template<class ImageScalarType , class DataImageType >
anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::NLMeansVectorPatchSearcher ( )

Definition at line 13 of file animaNLMeansVectorPatchSearcher.hxx.

◆ ~NLMeansVectorPatchSearcher()

template<class ImageScalarType , class DataImageType >
virtual anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::~NLMeansVectorPatchSearcher ( )
inlinevirtual

Definition at line 27 of file animaNLMeansVectorPatchSearcher.h.

Member Function Documentation

◆ ComputeComparisonProperties()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeComparisonProperties ( unsigned int  index,
ImageRegionType &  movingPatch 
)
protectedvirtual

Definition at line 64 of file animaNLMeansVectorPatchSearcher.hxx.

References anima::computePatchMeanAndCovariance().

Referenced by anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceStd().

◆ ComputeInputProperties()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeInputProperties ( const IndexType &  refIndex,
ImageRegionType &  refPatch 
)
protectedvirtual

Definition at line 24 of file animaNLMeansVectorPatchSearcher.hxx.

References anima::computeAverageLocalCovariance(), and anima::computePatchMeanAndCovariance().

Referenced by anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceStd().

◆ ComputeWeightValue()

template<class ImageScalarType , class DataImageType >
double anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeWeightValue ( unsigned int  index,
ImageRegionType &  refPatch,
ImageRegionType &  movingPatch 
)
protectedvirtual

Definition at line 104 of file animaNLMeansVectorPatchSearcher.hxx.

Referenced by anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceStd().

◆ SetBetaParameter()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetBetaParameter ( double  arg)
inline

Definition at line 29 of file animaNLMeansVectorPatchSearcher.h.

◆ SetDatabaseCovarianceDistanceAverage()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseCovarianceDistanceAverage ( DataImagePointer &  arg)
inline

Definition at line 35 of file animaNLMeansVectorPatchSearcher.h.

◆ SetDatabaseCovarianceDistanceStd()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseCovarianceDistanceStd ( DataImagePointer &  arg)
inline

Definition at line 36 of file animaNLMeansVectorPatchSearcher.h.

◆ SetDatabaseMeanDistanceAverage()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceAverage ( DataImagePointer &  arg)
inline

Definition at line 37 of file animaNLMeansVectorPatchSearcher.h.

◆ SetDatabaseMeanDistanceStd()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceStd ( DataImagePointer &  arg)
inline

Definition at line 38 of file animaNLMeansVectorPatchSearcher.h.

References anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeComparisonProperties(), anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeInputProperties(), anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::ComputeWeightValue(), and anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::TestPatchConformity().

◆ SetDataMask()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDataMask ( MaskImageType *  arg)
inline

Definition at line 33 of file animaNLMeansVectorPatchSearcher.h.

◆ SetMeanThreshold()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetMeanThreshold ( double  arg)
inline

Definition at line 30 of file animaNLMeansVectorPatchSearcher.h.

◆ SetVarianceThreshold()

template<class ImageScalarType , class DataImageType >
void anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetVarianceThreshold ( double  arg)
inline

Definition at line 31 of file animaNLMeansVectorPatchSearcher.h.

◆ TestPatchConformity()

template<class ImageScalarType , class DataImageType >
bool anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::TestPatchConformity ( unsigned int  index,
const IndexType &  refIndex,
const IndexType &  movingIndex 
)
protectedvirtual

Definition at line 80 of file animaNLMeansVectorPatchSearcher.hxx.

References anima::VectorCovarianceTest(), and anima::VectorMeansTest().

Referenced by anima::NLMeansVectorPatchSearcher< ImageScalarType, DataImageType >::SetDatabaseMeanDistanceStd().

The documentation for this class was generated from the following files:
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