ANIMA
4.0
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#include <animaPyramidalDenseSVFMatchingBridge.h>
Public Member Functions | |
void | Abort () |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
unsigned int | GetAffineDirection () |
Agregator | GetAgregator () |
double | GetAngleUpperBound () |
unsigned int | GetBCHCompositionOrder () |
unsigned int | GetBlockSize () |
unsigned int | GetBlockSpacing () |
double | GetElasticSigma () |
unsigned int | GetExponentiationOrder () |
double | GetExtrapolationSigma () |
double | GetFinalRadius () |
unsigned int | GetLastPyramidLevel () |
unsigned int | GetMaximumIterations () |
double | GetMEstimateConvergenceThreshold () |
Metric | GetMetric () |
double | GetMinimalTransformError () |
virtual const char * | GetNameOfClass () const |
double | GetNeighborhoodApproximation () |
unsigned int | GetNumberOfPyramidLevels () |
Optimizer | GetOptimizer () |
unsigned int | GetOptimizerMaximumIterations () |
double | GetOutlierSigma () |
DisplacementFieldTransformPointer | GetOutputDisplacementFieldTransform () |
InputImagePointer | GetOutputImage () |
BaseTransformPointer | GetOutputTransform () |
std::string | GetOutputTransformFile () |
double | GetPercentageKept () |
std::string | GetResultFile () |
double | GetScaleUpperBound () |
double | GetSearchAngleRadius () |
double | GetSearchRadius () |
double | GetSearchScaleRadius () |
double | GetStDevThreshold () |
double | GetStepSize () |
SymmetryType | GetSymmetryType () |
Transform | GetTransform () |
double | GetTranslateUpperBound () |
void | SetAffineDirection (unsigned int val) |
void | SetAgregator (Agregator agregator) |
void | SetAngleUpperBound (double AngleUpperBound) |
void | SetBCHCompositionOrder (unsigned int order) |
void | SetBlockGenerationMask (MaskImageType *mask) |
void | SetBlockSize (int blockSize) |
void | SetBlockSpacing (unsigned int blockSpacing) |
void | SetElasticSigma (double elasticSigma) |
void | SetExponentiationOrder (unsigned int order) |
void | SetExtrapolationSigma (double extrapolationSigma) |
void | SetFinalRadius (double FinalRadius) |
void | SetFloatingImage (InputImagePointer FloatingImage) |
void | SetLastPyramidLevel (unsigned int LastPyramidLevel) |
void | SetMaximumIterations (unsigned int MaximumIterations) |
void | SetMEstimateConvergenceThreshold (double mEstimateConvergenceThreshold) |
void | SetMetric (Metric metric) |
void | SetMinimalTransformError (double MinimalTransformError) |
void | SetNeighborhoodApproximation (double neighborhoodApproximation) |
void | SetNumberOfPyramidLevels (unsigned int NumberOfPyramidLevels) |
void | SetOptimizer (Optimizer optimizer) |
void | SetOptimizerMaximumIterations (unsigned int OptimizerMaximumIterations) |
void | SetOutlierSigma (double outlierSigma) |
void | SetOutputTransformFile (std::string outputTransformFile) |
void | SetPercentageKept (double PercentageKept) |
void | SetProgressCallback (itk::CStyleCommand::Pointer callback) |
void | SetReferenceImage (InputImagePointer referenceImage) |
void | SetResultFile (std::string resultFile) |
void | SetScaleUpperBound (double ScaleUpperBound) |
void | SetSearchAngleRadius (double SearchAngleRadius) |
void | SetSearchRadius (double SearchRadius) |
void | SetSearchScaleRadius (double SearchScaleRadius) |
void | SetStDevThreshold (double StDevThreshold) |
void | SetStepSize (double StepSize) |
void | SetSymmetryType (SymmetryType sym) |
void | SetTransform (Transform transform) |
void | SetTranslateUpperBound (double TranslateUpperBound) |
void | SetVerbose (bool value) |
void | Update () ITK_OVERRIDE |
void | WriteOutputs () |
Static Public Member Functions | |
static Pointer | New () |
Protected Member Functions | |
void | EmitProgress (int prog) |
PyramidalDenseSVFMatchingBridge () | |
void | SetupPyramids () |
virtual | ~PyramidalDenseSVFMatchingBridge () |
Static Protected Member Functions | |
static void | ManageProgress (itk::Object *caller, const itk::EventObject &event, void *clientData) |
Definition at line 15 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef AffineTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::AffineTransformPointer |
Definition at line 38 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::AffineTransform<typename BaseAgregatorType::InternalScalarType,ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::AffineTransformType |
Definition at line 37 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef BalooSVFTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BalooAgregatorType |
Definition at line 30 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef BaseTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseAgregatorType |
Definition at line 28 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef BaseBlockMatchRegistrationType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationPointer |
Definition at line 47 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef anima::BaseBMRegistrationMethod<InputImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationType |
Definition at line 46 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef BaseTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseTransformPointer |
Definition at line 33 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef MEstimateAgregatorType::BaseOutputTransformType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseTransformType |
Definition at line 32 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::SmartPointer<const Self> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ConstPointer |
Definition at line 54 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef DisplacementFieldTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformPointer |
Definition at line 41 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef rpi::DisplacementFieldTransform<typename BaseAgregatorType::ScalarType, ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformType |
Definition at line 40 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef InputImageType::ConstPointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImageConstPointer |
Definition at line 21 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef InputImageType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImagePointer |
Definition at line 20 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::Image<double,ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImageType |
Definition at line 18 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef InputImageType::IOPixelType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputPixelType |
Definition at line 19 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef MaskImageType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskImagePointer |
Definition at line 24 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::Image<unsigned char, ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskImageType |
Definition at line 23 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef MaskPyramidType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskPyramidPointer |
Definition at line 26 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef anima::PyramidImageFilter<MaskImageType,MaskImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskPyramidType |
Definition at line 25 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef DenseSVFTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MEstimateAgregatorType |
Definition at line 29 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::SmartPointer<Self> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Pointer |
Definition at line 53 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef PyramidType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidPointer |
Definition at line 44 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef anima::PyramidImageFilter<InputImageType,InputImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidType |
Definition at line 43 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef PyramidalDenseSVFMatchingBridge anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Self |
SmartPointer typedef support
Definition at line 50 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef itk::ProcessObject anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Superclass |
Definition at line 51 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef VelocityFieldType::PixelType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::VectorType |
Definition at line 35 of file animaPyramidalDenseSVFMatchingBridge.h.
typedef BaseTransformType::VectorFieldType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::VelocityFieldType |
Definition at line 34 of file animaPyramidalDenseSVFMatchingBridge.h.
enum anima::PyramidalDenseSVFMatchingBridge::Agregator |
Enumerator | |
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Baloo | |
MSmoother |
Definition at line 87 of file animaPyramidalDenseSVFMatchingBridge.h.
enum anima::PyramidalDenseSVFMatchingBridge::Metric |
Enumerator | |
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SquaredCorrelation | |
Correlation | |
MeanSquares |
Definition at line 74 of file animaPyramidalDenseSVFMatchingBridge.h.
enum anima::PyramidalDenseSVFMatchingBridge::Optimizer |
Enumerator | |
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Exhaustive | |
Bobyqa |
Definition at line 81 of file animaPyramidalDenseSVFMatchingBridge.h.
enum anima::PyramidalDenseSVFMatchingBridge::SymmetryType |
Enumerator | |
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Asymmetric | |
Symmetric | |
Kissing |
Definition at line 59 of file animaPyramidalDenseSVFMatchingBridge.h.
enum anima::PyramidalDenseSVFMatchingBridge::Transform |
Enumerator | |
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Translation | |
Rigid | |
Affine | |
Directional_Affine |
Definition at line 66 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 22 of file animaPyramidalDenseSVFMatchingBridge.hxx.
References Asymmetric, Baloo, Bobyqa, SquaredCorrelation, and Translation.
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().
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Definition at line 80 of file animaPyramidalDenseSVFMatchingBridge.hxx.
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Abort | ( | ) |
Definition at line 86 of file animaPyramidalDenseSVFMatchingBridge.hxx.
virtual::itk::LightObject::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::CreateAnother | ( | void | ) | const |
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Definition at line 518 of file animaPyramidalDenseSVFMatchingBridge.hxx.
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ManageProgress(), and anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().
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Definition at line 144 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 186 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 180 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 204 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 129 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 132 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 192 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 207 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 189 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 171 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 213 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 153 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 198 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 147 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 156 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 201 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 210 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 150 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 159 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 195 of file animaPyramidalDenseSVFMatchingBridge.h.
PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformPointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputDisplacementFieldTransform | ( | ) |
Getter for transform as displacement field
Definition at line 507 of file animaPyramidalDenseSVFMatchingBridge.hxx.
References anima::GetSVFExponential().
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputTransform().
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Definition at line 105 of file animaPyramidalDenseSVFMatchingBridge.h.
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Getter for transform
Definition at line 110 of file animaPyramidalDenseSVFMatchingBridge.h.
References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputDisplacementFieldTransform().
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Definition at line 126 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 216 of file animaPyramidalDenseSVFMatchingBridge.h.
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Setter/Getter for parameters
Definition at line 123 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 183 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 165 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 162 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 168 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 135 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 174 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 138 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 141 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 177 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 525 of file animaPyramidalDenseSVFMatchingBridge.hxx.
References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::EmitProgress().
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().
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Definition at line 145 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 187 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 181 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 205 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 219 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 130 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 133 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 193 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 208 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 190 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 172 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 103 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 214 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 154 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 199 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 148 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 157 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 202 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 211 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 151 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 160 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 196 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 127 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 217 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 117 of file animaPyramidalDenseSVFMatchingBridge.h.
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Setter for images
Definition at line 102 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 124 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 184 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 166 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 163 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 169 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 136 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 175 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 139 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 142 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 178 of file animaPyramidalDenseSVFMatchingBridge.h.
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Definition at line 551 of file animaPyramidalDenseSVFMatchingBridge.hxx.
Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().
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Definition at line 221 of file animaPyramidalDenseSVFMatchingBridge.h.
References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::EmitProgress(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ManageProgress(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidalDenseSVFMatchingBridge(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetupPyramids(), and anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::~PyramidalDenseSVFMatchingBridge().
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Update | ( | ) |
Definition at line 96 of file animaPyramidalDenseSVFMatchingBridge.hxx.
References Affine, Asymmetric, Bobyqa, Correlation, Exhaustive, anima::GetSVFExponential(), Kissing, MeanSquares, MSmoother, Rigid, anima::BaseBlockMatcher< TInputImageType >::SetBlockPercentageKept(), anima::DenseSVFTransformAgregator< NDimensions >::SetDistanceBoundary(), anima::BalooSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::DenseSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::BalooSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::DenseSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::DenseSVFTransformAgregator< NDimensions >::SetMEstimateConvergenceThreshold(), anima::DenseSVFTransformAgregator< NDimensions >::SetNeighborhoodHalfSize(), anima::DenseSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::BalooSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::DenseSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BalooSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BaseTransformAgregator< NDimensions >::SetOutputTransformType(), anima::BaseTransformAgregator< NDimensions >::SetVerboseAgregation(), SquaredCorrelation, Symmetric, and Translation.
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::WriteOutputs | ( | ) |
Definition at line 536 of file animaPyramidalDenseSVFMatchingBridge.hxx.