ANIMA  4.0
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Static Protected Member Functions | List of all members
anima::PyramidalDenseSVFMatchingBridge< ImageDimension > Class Template Reference

#include <animaPyramidalDenseSVFMatchingBridge.h>

+ Inheritance diagram for anima::PyramidalDenseSVFMatchingBridge< ImageDimension >:
+ Collaboration diagram for anima::PyramidalDenseSVFMatchingBridge< ImageDimension >:

Public Types

typedef AffineTransformType::Pointer AffineTransformPointer
 
typedef itk::AffineTransform< typename BaseAgregatorType::InternalScalarType, ImageDimension > AffineTransformType
 
enum  Agregator {
  Baloo = 0,
  MSmoother
}
 
typedef BalooSVFTransformAgregator< ImageDimension > BalooAgregatorType
 
typedef BaseTransformAgregator< ImageDimension > BaseAgregatorType
 
typedef BaseBlockMatchRegistrationType::Pointer BaseBlockMatchRegistrationPointer
 
typedef anima::BaseBMRegistrationMethod< InputImageType > BaseBlockMatchRegistrationType
 
typedef BaseTransformType::Pointer BaseTransformPointer
 
typedef MEstimateAgregatorType::BaseOutputTransformType BaseTransformType
 
typedef itk::SmartPointer< const Self > ConstPointer
 
typedef DisplacementFieldTransformType::Pointer DisplacementFieldTransformPointer
 
typedef rpi::DisplacementFieldTransform< typename BaseAgregatorType::ScalarType, ImageDimension > DisplacementFieldTransformType
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::Pointer InputImagePointer
 
typedef itk::Image< double, ImageDimension > InputImageType
 
typedef InputImageType::IOPixelType InputPixelType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef itk::Image< unsigned char, ImageDimension > MaskImageType
 
typedef MaskPyramidType::Pointer MaskPyramidPointer
 
typedef anima::PyramidImageFilter< MaskImageType, MaskImageType > MaskPyramidType
 
typedef DenseSVFTransformAgregator< ImageDimension > MEstimateAgregatorType
 
enum  Metric {
  SquaredCorrelation = 0,
  Correlation,
  MeanSquares
}
 
enum  Optimizer {
  Exhaustive = 0,
  Bobyqa
}
 
typedef itk::SmartPointer< Self > Pointer
 
typedef PyramidType::Pointer PyramidPointer
 
typedef anima::PyramidImageFilter< InputImageType, InputImageType > PyramidType
 
typedef PyramidalDenseSVFMatchingBridge Self
 
typedef itk::ProcessObject Superclass
 
enum  SymmetryType {
  Asymmetric = 0,
  Symmetric,
  Kissing
}
 
enum  Transform {
  Translation = 0,
  Rigid,
  Affine,
  Directional_Affine
}
 
typedef VelocityFieldType::PixelType VectorType
 
typedef BaseTransformType::VectorFieldType VelocityFieldType
 

Public Member Functions

void Abort ()
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
unsigned int GetAffineDirection ()
 
Agregator GetAgregator ()
 
double GetAngleUpperBound ()
 
unsigned int GetBCHCompositionOrder ()
 
unsigned int GetBlockSize ()
 
unsigned int GetBlockSpacing ()
 
double GetElasticSigma ()
 
unsigned int GetExponentiationOrder ()
 
double GetExtrapolationSigma ()
 
double GetFinalRadius ()
 
unsigned int GetLastPyramidLevel ()
 
unsigned int GetMaximumIterations ()
 
double GetMEstimateConvergenceThreshold ()
 
Metric GetMetric ()
 
double GetMinimalTransformError ()
 
virtual const char * GetNameOfClass () const
 
double GetNeighborhoodApproximation ()
 
unsigned int GetNumberOfPyramidLevels ()
 
Optimizer GetOptimizer ()
 
unsigned int GetOptimizerMaximumIterations ()
 
double GetOutlierSigma ()
 
DisplacementFieldTransformPointer GetOutputDisplacementFieldTransform ()
 
InputImagePointer GetOutputImage ()
 
BaseTransformPointer GetOutputTransform ()
 
std::string GetOutputTransformFile ()
 
double GetPercentageKept ()
 
std::string GetResultFile ()
 
double GetScaleUpperBound ()
 
double GetSearchAngleRadius ()
 
double GetSearchRadius ()
 
double GetSearchScaleRadius ()
 
double GetStDevThreshold ()
 
double GetStepSize ()
 
SymmetryType GetSymmetryType ()
 
Transform GetTransform ()
 
double GetTranslateUpperBound ()
 
void SetAffineDirection (unsigned int val)
 
void SetAgregator (Agregator agregator)
 
void SetAngleUpperBound (double AngleUpperBound)
 
void SetBCHCompositionOrder (unsigned int order)
 
void SetBlockGenerationMask (MaskImageType *mask)
 
void SetBlockSize (int blockSize)
 
void SetBlockSpacing (unsigned int blockSpacing)
 
void SetElasticSigma (double elasticSigma)
 
void SetExponentiationOrder (unsigned int order)
 
void SetExtrapolationSigma (double extrapolationSigma)
 
void SetFinalRadius (double FinalRadius)
 
void SetFloatingImage (InputImagePointer FloatingImage)
 
void SetLastPyramidLevel (unsigned int LastPyramidLevel)
 
void SetMaximumIterations (unsigned int MaximumIterations)
 
void SetMEstimateConvergenceThreshold (double mEstimateConvergenceThreshold)
 
void SetMetric (Metric metric)
 
void SetMinimalTransformError (double MinimalTransformError)
 
void SetNeighborhoodApproximation (double neighborhoodApproximation)
 
void SetNumberOfPyramidLevels (unsigned int NumberOfPyramidLevels)
 
void SetOptimizer (Optimizer optimizer)
 
void SetOptimizerMaximumIterations (unsigned int OptimizerMaximumIterations)
 
void SetOutlierSigma (double outlierSigma)
 
void SetOutputTransformFile (std::string outputTransformFile)
 
void SetPercentageKept (double PercentageKept)
 
void SetProgressCallback (itk::CStyleCommand::Pointer callback)
 
void SetReferenceImage (InputImagePointer referenceImage)
 
void SetResultFile (std::string resultFile)
 
void SetScaleUpperBound (double ScaleUpperBound)
 
void SetSearchAngleRadius (double SearchAngleRadius)
 
void SetSearchRadius (double SearchRadius)
 
void SetSearchScaleRadius (double SearchScaleRadius)
 
void SetStDevThreshold (double StDevThreshold)
 
void SetStepSize (double StepSize)
 
void SetSymmetryType (SymmetryType sym)
 
void SetTransform (Transform transform)
 
void SetTranslateUpperBound (double TranslateUpperBound)
 
void SetVerbose (bool value)
 
void Update () ITK_OVERRIDE
 
void WriteOutputs ()
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void EmitProgress (int prog)
 
 PyramidalDenseSVFMatchingBridge ()
 
void SetupPyramids ()
 
virtual ~PyramidalDenseSVFMatchingBridge ()
 

Static Protected Member Functions

static void ManageProgress (itk::Object *caller, const itk::EventObject &event, void *clientData)
 

Detailed Description

template<unsigned int ImageDimension = 3>
class anima::PyramidalDenseSVFMatchingBridge< ImageDimension >

Definition at line 15 of file animaPyramidalDenseSVFMatchingBridge.h.

Member Typedef Documentation

◆ AffineTransformPointer

template<unsigned int ImageDimension = 3>
typedef AffineTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::AffineTransformPointer

Definition at line 38 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ AffineTransformType

template<unsigned int ImageDimension = 3>
typedef itk::AffineTransform<typename BaseAgregatorType::InternalScalarType,ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::AffineTransformType

Definition at line 37 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BalooAgregatorType

template<unsigned int ImageDimension = 3>
typedef BalooSVFTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BalooAgregatorType

Definition at line 30 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BaseAgregatorType

template<unsigned int ImageDimension = 3>
typedef BaseTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseAgregatorType

Definition at line 28 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BaseBlockMatchRegistrationPointer

template<unsigned int ImageDimension = 3>
typedef BaseBlockMatchRegistrationType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationPointer

Definition at line 47 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BaseBlockMatchRegistrationType

template<unsigned int ImageDimension = 3>
typedef anima::BaseBMRegistrationMethod<InputImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseBlockMatchRegistrationType

Definition at line 46 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BaseTransformPointer

template<unsigned int ImageDimension = 3>
typedef BaseTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseTransformPointer

Definition at line 33 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ BaseTransformType

template<unsigned int ImageDimension = 3>
typedef MEstimateAgregatorType::BaseOutputTransformType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::BaseTransformType

Definition at line 32 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ ConstPointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<const Self> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ConstPointer

Definition at line 54 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ DisplacementFieldTransformPointer

template<unsigned int ImageDimension = 3>
typedef DisplacementFieldTransformType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformPointer

Definition at line 41 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ DisplacementFieldTransformType

template<unsigned int ImageDimension = 3>
typedef rpi::DisplacementFieldTransform<typename BaseAgregatorType::ScalarType, ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformType

Definition at line 40 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ InputImageConstPointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::ConstPointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImageConstPointer

Definition at line 21 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ InputImagePointer

template<unsigned int ImageDimension = 3>
typedef InputImageType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImagePointer

Definition at line 20 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ InputImageType

template<unsigned int ImageDimension = 3>
typedef itk::Image<double,ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputImageType

Definition at line 18 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ InputPixelType

template<unsigned int ImageDimension = 3>
typedef InputImageType::IOPixelType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::InputPixelType

Definition at line 19 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ MaskImagePointer

template<unsigned int ImageDimension = 3>
typedef MaskImageType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskImagePointer

Definition at line 24 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ MaskImageType

template<unsigned int ImageDimension = 3>
typedef itk::Image<unsigned char, ImageDimension> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskImageType

Definition at line 23 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ MaskPyramidPointer

template<unsigned int ImageDimension = 3>
typedef MaskPyramidType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskPyramidPointer

Definition at line 26 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ MaskPyramidType

template<unsigned int ImageDimension = 3>
typedef anima::PyramidImageFilter<MaskImageType,MaskImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MaskPyramidType

Definition at line 25 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ MEstimateAgregatorType

template<unsigned int ImageDimension = 3>
typedef DenseSVFTransformAgregator< ImageDimension > anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::MEstimateAgregatorType

Definition at line 29 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Pointer

template<unsigned int ImageDimension = 3>
typedef itk::SmartPointer<Self> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Pointer

Definition at line 53 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ PyramidPointer

template<unsigned int ImageDimension = 3>
typedef PyramidType::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidPointer

Definition at line 44 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ PyramidType

template<unsigned int ImageDimension = 3>
typedef anima::PyramidImageFilter<InputImageType,InputImageType> anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidType

Definition at line 43 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Self

template<unsigned int ImageDimension = 3>
typedef PyramidalDenseSVFMatchingBridge anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Self

SmartPointer typedef support

Definition at line 50 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Superclass

template<unsigned int ImageDimension = 3>
typedef itk::ProcessObject anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Superclass

Definition at line 51 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ VectorType

template<unsigned int ImageDimension = 3>
typedef VelocityFieldType::PixelType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::VectorType

Definition at line 35 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ VelocityFieldType

template<unsigned int ImageDimension = 3>
typedef BaseTransformType::VectorFieldType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::VelocityFieldType

Definition at line 34 of file animaPyramidalDenseSVFMatchingBridge.h.

Member Enumeration Documentation

◆ Agregator

template<unsigned int ImageDimension = 3>
enum anima::PyramidalDenseSVFMatchingBridge::Agregator
Enumerator
Baloo 
MSmoother 

Definition at line 87 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Metric

template<unsigned int ImageDimension = 3>
enum anima::PyramidalDenseSVFMatchingBridge::Metric
Enumerator
SquaredCorrelation 
Correlation 
MeanSquares 

Definition at line 74 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Optimizer

template<unsigned int ImageDimension = 3>
enum anima::PyramidalDenseSVFMatchingBridge::Optimizer
Enumerator
Exhaustive 
Bobyqa 

Definition at line 81 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SymmetryType

template<unsigned int ImageDimension = 3>
enum anima::PyramidalDenseSVFMatchingBridge::SymmetryType
Enumerator
Asymmetric 
Symmetric 
Kissing 

Definition at line 59 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ Transform

template<unsigned int ImageDimension = 3>
enum anima::PyramidalDenseSVFMatchingBridge::Transform
Enumerator
Translation 
Rigid 
Affine 
Directional_Affine 

Definition at line 66 of file animaPyramidalDenseSVFMatchingBridge.h.

Constructor & Destructor Documentation

◆ PyramidalDenseSVFMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidalDenseSVFMatchingBridge ( )
protected

Definition at line 22 of file animaPyramidalDenseSVFMatchingBridge.hxx.

References Asymmetric, Baloo, Bobyqa, SquaredCorrelation, and Translation.

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().

◆ ~PyramidalDenseSVFMatchingBridge()

template<unsigned int ImageDimension>
anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::~PyramidalDenseSVFMatchingBridge ( )
protectedvirtual

Definition at line 80 of file animaPyramidalDenseSVFMatchingBridge.hxx.

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().

Member Function Documentation

◆ Abort()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Abort ( )

Definition at line 86 of file animaPyramidalDenseSVFMatchingBridge.hxx.

◆ CreateAnother()

template<unsigned int ImageDimension = 3>
virtual::itk::LightObject::Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::CreateAnother ( void  ) const

◆ EmitProgress()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::EmitProgress ( int  prog)
protected

Definition at line 518 of file animaPyramidalDenseSVFMatchingBridge.hxx.

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ManageProgress(), and anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().

◆ GetAffineDirection()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetAffineDirection ( )
inline

Definition at line 144 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetAgregator()

template<unsigned int ImageDimension = 3>
Agregator anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetAgregator ( )
inline

Definition at line 186 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetAngleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetAngleUpperBound ( )
inline

Definition at line 180 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetBCHCompositionOrder()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetBCHCompositionOrder ( )
inline

Definition at line 204 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetBlockSize()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetBlockSize ( )
inline

Definition at line 129 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetBlockSpacing()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetBlockSpacing ( )
inline

Definition at line 132 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetElasticSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetElasticSigma ( )
inline

Definition at line 192 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetExponentiationOrder()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetExponentiationOrder ( )
inline

Definition at line 207 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetExtrapolationSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetExtrapolationSigma ( )
inline

Definition at line 189 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetFinalRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetFinalRadius ( )
inline

Definition at line 171 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetLastPyramidLevel ( )
inline

Definition at line 213 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetMaximumIterations ( )
inline

Definition at line 153 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetMEstimateConvergenceThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetMEstimateConvergenceThreshold ( )
inline

Definition at line 198 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetMetric()

template<unsigned int ImageDimension = 3>
Metric anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetMetric ( )
inline

Definition at line 147 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetMinimalTransformError()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetMinimalTransformError ( )
inline

Definition at line 156 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetNameOfClass()

template<unsigned int ImageDimension = 3>
virtual const char* anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetNameOfClass ( ) const
virtual

◆ GetNeighborhoodApproximation()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetNeighborhoodApproximation ( )
inline

Definition at line 201 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetNumberOfPyramidLevels ( )
inline

Definition at line 210 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetOptimizer()

template<unsigned int ImageDimension = 3>
Optimizer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOptimizer ( )
inline

Definition at line 150 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
unsigned int anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOptimizerMaximumIterations ( )
inline

Definition at line 159 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetOutlierSigma()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutlierSigma ( )
inline

Definition at line 195 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetOutputDisplacementFieldTransform()

template<unsigned int ImageDimension>
PyramidalDenseSVFMatchingBridge< ImageDimension >::DisplacementFieldTransformPointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputDisplacementFieldTransform ( )

Getter for transform as displacement field

Definition at line 507 of file animaPyramidalDenseSVFMatchingBridge.hxx.

References anima::GetSVFExponential().

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputTransform().

◆ GetOutputImage()

template<unsigned int ImageDimension = 3>
InputImagePointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputImage ( )
inline

Definition at line 105 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetOutputTransform()

template<unsigned int ImageDimension = 3>
BaseTransformPointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputTransform ( )
inline

Getter for transform

Definition at line 110 of file animaPyramidalDenseSVFMatchingBridge.h.

References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputDisplacementFieldTransform().

◆ GetOutputTransformFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetOutputTransformFile ( )
inline

Definition at line 126 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetPercentageKept()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetPercentageKept ( )
inline

Definition at line 216 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetResultFile()

template<unsigned int ImageDimension = 3>
std::string anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetResultFile ( )
inline

Setter/Getter for parameters

Definition at line 123 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetScaleUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetScaleUpperBound ( )
inline

Definition at line 183 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetSearchAngleRadius ( )
inline

Definition at line 165 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetSearchRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetSearchRadius ( )
inline

Definition at line 162 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetSearchScaleRadius ( )
inline

Definition at line 168 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetStDevThreshold()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetStDevThreshold ( )
inline

Definition at line 135 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetStepSize()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetStepSize ( )
inline

Definition at line 174 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetSymmetryType()

template<unsigned int ImageDimension = 3>
SymmetryType anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetSymmetryType ( )
inline

Definition at line 138 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetTransform()

template<unsigned int ImageDimension = 3>
Transform anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetTransform ( )
inline

Definition at line 141 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ GetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
double anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::GetTranslateUpperBound ( )
inline

Definition at line 177 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ ManageProgress()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ManageProgress ( itk::Object *  caller,
const itk::EventObject &  event,
void *  clientData 
)
staticprotected

Definition at line 525 of file animaPyramidalDenseSVFMatchingBridge.hxx.

References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::EmitProgress().

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().

◆ New()

template<unsigned int ImageDimension = 3>
static Pointer anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::New ( )
static

◆ SetAffineDirection()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetAffineDirection ( unsigned int  val)
inline

Definition at line 145 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetAgregator()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetAgregator ( Agregator  agregator)
inline

Definition at line 187 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetAngleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetAngleUpperBound ( double  AngleUpperBound)
inline

Definition at line 181 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetBCHCompositionOrder()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetBCHCompositionOrder ( unsigned int  order)
inline

Definition at line 205 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetBlockGenerationMask()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetBlockGenerationMask ( MaskImageType *  mask)
inline

Definition at line 219 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetBlockSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetBlockSize ( int  blockSize)
inline

Definition at line 130 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetBlockSpacing()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetBlockSpacing ( unsigned int  blockSpacing)
inline

Definition at line 133 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetElasticSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetElasticSigma ( double  elasticSigma)
inline

Definition at line 193 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetExponentiationOrder()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetExponentiationOrder ( unsigned int  order)
inline

Definition at line 208 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetExtrapolationSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetExtrapolationSigma ( double  extrapolationSigma)
inline

Definition at line 190 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetFinalRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetFinalRadius ( double  FinalRadius)
inline

Definition at line 172 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetFloatingImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetFloatingImage ( InputImagePointer  FloatingImage)
inline

Definition at line 103 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetLastPyramidLevel()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetLastPyramidLevel ( unsigned int  LastPyramidLevel)
inline

Definition at line 214 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetMaximumIterations ( unsigned int  MaximumIterations)
inline

Definition at line 154 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetMEstimateConvergenceThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetMEstimateConvergenceThreshold ( double  mEstimateConvergenceThreshold)
inline

Definition at line 199 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetMetric()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetMetric ( Metric  metric)
inline

Definition at line 148 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetMinimalTransformError()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetMinimalTransformError ( double  MinimalTransformError)
inline

Definition at line 157 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetNeighborhoodApproximation()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetNeighborhoodApproximation ( double  neighborhoodApproximation)
inline

Definition at line 202 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetNumberOfPyramidLevels()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetNumberOfPyramidLevels ( unsigned int  NumberOfPyramidLevels)
inline

Definition at line 211 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetOptimizer()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetOptimizer ( Optimizer  optimizer)
inline

Definition at line 151 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetOptimizerMaximumIterations()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetOptimizerMaximumIterations ( unsigned int  OptimizerMaximumIterations)
inline

Definition at line 160 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetOutlierSigma()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetOutlierSigma ( double  outlierSigma)
inline

Definition at line 196 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetOutputTransformFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetOutputTransformFile ( std::string  outputTransformFile)
inline

Definition at line 127 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetPercentageKept()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetPercentageKept ( double  PercentageKept)
inline

Definition at line 217 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetProgressCallback()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetProgressCallback ( itk::CStyleCommand::Pointer  callback)
inline

Definition at line 117 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetReferenceImage()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetReferenceImage ( InputImagePointer  referenceImage)
inline

Setter for images

Definition at line 102 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetResultFile()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetResultFile ( std::string  resultFile)
inline

Definition at line 124 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetScaleUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetScaleUpperBound ( double  ScaleUpperBound)
inline

Definition at line 184 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetSearchAngleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetSearchAngleRadius ( double  SearchAngleRadius)
inline

Definition at line 166 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetSearchRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetSearchRadius ( double  SearchRadius)
inline

Definition at line 163 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetSearchScaleRadius()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetSearchScaleRadius ( double  SearchScaleRadius)
inline

Definition at line 169 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetStDevThreshold()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetStDevThreshold ( double  StDevThreshold)
inline

Definition at line 136 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetStepSize()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetStepSize ( double  StepSize)
inline

Definition at line 175 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetSymmetryType()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetSymmetryType ( SymmetryType  sym)
inline

Definition at line 139 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetTransform()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetTransform ( Transform  transform)
inline

Definition at line 142 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetTranslateUpperBound()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetTranslateUpperBound ( double  TranslateUpperBound)
inline

Definition at line 178 of file animaPyramidalDenseSVFMatchingBridge.h.

◆ SetupPyramids()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetupPyramids ( )
protected

Definition at line 551 of file animaPyramidalDenseSVFMatchingBridge.hxx.

Referenced by anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose().

◆ SetVerbose()

template<unsigned int ImageDimension = 3>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetVerbose ( bool  value)
inline

Definition at line 221 of file animaPyramidalDenseSVFMatchingBridge.h.

References anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::EmitProgress(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::ManageProgress(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::PyramidalDenseSVFMatchingBridge(), anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::SetupPyramids(), and anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::~PyramidalDenseSVFMatchingBridge().

◆ Update()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::Update ( )

Definition at line 96 of file animaPyramidalDenseSVFMatchingBridge.hxx.

References Affine, Asymmetric, Bobyqa, Correlation, Exhaustive, anima::GetSVFExponential(), Kissing, MeanSquares, MSmoother, Rigid, anima::BaseBlockMatcher< TInputImageType >::SetBlockPercentageKept(), anima::DenseSVFTransformAgregator< NDimensions >::SetDistanceBoundary(), anima::BalooSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::DenseSVFTransformAgregator< NDimensions >::SetExtrapolationSigma(), anima::BalooSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::DenseSVFTransformAgregator< NDimensions >::SetGeometryInformation(), anima::DenseSVFTransformAgregator< NDimensions >::SetMEstimateConvergenceThreshold(), anima::DenseSVFTransformAgregator< NDimensions >::SetNeighborhoodHalfSize(), anima::DenseSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::BalooSVFTransformAgregator< NDimensions >::SetNumberOfWorkUnits(), anima::DenseSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BalooSVFTransformAgregator< NDimensions >::SetOutlierRejectionSigma(), anima::BaseTransformAgregator< NDimensions >::SetOutputTransformType(), anima::BaseTransformAgregator< NDimensions >::SetVerboseAgregation(), SquaredCorrelation, Symmetric, and Translation.

◆ WriteOutputs()

template<unsigned int ImageDimension>
void anima::PyramidalDenseSVFMatchingBridge< ImageDimension >::WriteOutputs ( )

Definition at line 536 of file animaPyramidalDenseSVFMatchingBridge.hxx.

The documentation for this class was generated from the following files:
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