animaBaseTransformAgregator.h

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#pragma once

// Transformation types handled, kind of redundant with itk transforms but much easier to use after
// TRANSLATION -> itk::TranslationTransform
// RIGID -> itk::Rigid3DTransform
// AFFINE -> itk::AffineTransform

#include <itkMatrixOffsetTransformBase.h>
#include <itkImage.h>
#include <itkPoint.h>

namespace anima
{

template <unsigned int NDimensions = 3>
class BaseTransformAgregator
{
public:
    typedef double ScalarType;
    typedef double InternalScalarType;
    typedef itk::Transform<InternalScalarType,NDimensions,NDimensions> BaseInputTransformType;
    typedef typename BaseInputTransformType::Pointer BaseInputTransformPointer;
    typedef itk::Transform<ScalarType,NDimensions,NDimensions> BaseOutputTransformType;
    typedef itk::Point <InternalScalarType,NDimensions> PointType;
    typedef itk::ImageRegion <NDimensions> RegionType;
    typedef itk::Matrix <ScalarType,NDimensions,NDimensions> MatrixType;

    enum TRANSFORM_TYPE {
        TRANSLATION,
        RIGID,
        ANISOTROPIC_SIM,
        AFFINE,
        DIRECTIONAL_AFFINE,
        SVF
    };

    BaseTransformAgregator();
    virtual ~BaseTransformAgregator();

    void SetInputTransforms(std::vector <BaseInputTransformPointer> &inputTransforms);

    std::vector <BaseInputTransformPointer> &GetInputTransforms() {return m_InputTransforms;}
    BaseInputTransformType *GetInputTransform(unsigned int i) {return m_InputTransforms[i].GetPointer();}

    void SetCurrentLinearTransform(BaseInputTransformPointer &inputTransforms);

    BaseInputTransformPointer &GetCurrentLinearTransform() { return m_CurrentLinearTransform; }

    void SetOrthogonalDirectionMatrix(const MatrixType &inputTransforms);

    MatrixType &GetOrthogonalDirectionMatrix() { return m_OrthogonalDirectionMatrix; }

    void SetInputOrigins(const std::vector <PointType> &inputOrigins)
    {
        m_InputOrigins = inputOrigins;
        m_UpToDate = false;
    }

    void SetInputRegions(const std::vector <RegionType> &inputRegions)
    {
        m_InputRegions = inputRegions;
        m_UpToDate = false;
    }

    std::vector <RegionType> & GetInputRegions() {return m_InputRegions;}
    std::vector <PointType> & GetInputOrigins() {return m_InputOrigins;}
    PointType & GetInputOrigin(unsigned int i) {return m_InputOrigins[i];}

    void SetInputWeights(const std::vector <InternalScalarType> &weights)
    {
        m_Weights = weights;
        m_UpToDate = false;
    }

    std::vector <InternalScalarType> & GetInputWeights() {return m_Weights;}
    InternalScalarType GetInputWeight(unsigned int i) {return m_Weights[i];}
    void SetInputWeight(unsigned int i, double w)
    {
        if (m_Weights.size() > i)
            m_Weights[i] = w;
    }

    void SetInputTransformType(TRANSFORM_TYPE name);
    void SetOutputTransformType(TRANSFORM_TYPE name);

    void SetUpToDate(bool value) {m_UpToDate = value;}

    void SetVerboseAgregation(bool value) {m_VerboseAgregation = value;}
    bool GetVerboseAgregation() {return m_VerboseAgregation;}

    virtual PointType GetEstimationBarycenter() { return PointType(); }

    TRANSFORM_TYPE GetInputTransformType() {return m_InputTransformType;}
    TRANSFORM_TYPE GetOutputTransformType() {return m_OutputTransformType;}

    virtual bool Update() = 0;

    BaseOutputTransformType *GetOutput();

protected:
    void SetOutput(BaseOutputTransformType *output);

private:
    std::vector <BaseInputTransformPointer> m_InputTransforms;
    std::vector <PointType> m_InputOrigins;
    std::vector <InternalScalarType> m_Weights;
    BaseInputTransformPointer m_CurrentLinearTransform;
    MatrixType m_OrthogonalDirectionMatrix;

    bool m_UpToDate;
    bool m_VerboseAgregation;

    typename BaseOutputTransformType::Pointer m_Output;

    std::vector < RegionType > m_InputRegions;

    TRANSFORM_TYPE m_InputTransformType, m_OutputTransformType;
};

} // end of namespace anima

// Include instantiation
#include "animaBaseTransformAgregator.hxx"