anima::PatientToGroupODFComparisonImageFilter< PixelScalarType > Class Template Reference

#include <animaPatientToGroupODFComparisonImageFilter.h>

Inheritance diagram for anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >:

Collaboration diagram for anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::SmartPointer< Self >	Pointer
typedef anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >	Self
typedef anima::PatientToGroupComparisonImageFilter< PixelScalarType >	Superclass
typedef Superclass::VectorType	VectorType
Public Types inherited from anima::PatientToGroupComparisonImageFilter< PixelScalarType >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef vnl_matrix< double >	CovMatrixType
typedef InputImageType::IndexType	InputImageIndexType
typedef InputImageType::Pointer	InputImagePointer
typedef itk::VectorImage< PixelScalarType, 3 >	InputImageType
typedef Superclass::MaskImageType	MaskImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::Image< PixelScalarType, 3 >	OutputImageType
typedef itk::SmartPointer< Self >	Pointer
typedef PatientToGroupComparisonImageFilter< PixelScalarType >	Self
typedef anima::MaskedImageToImageFilter< InputImageType, OutputImageType >	Superclass
enum	TestType {   CHI_SQUARE = 0,   FISHER }
typedef InputImageType::PixelType	VectorType
Public Types inherited from anima::MaskedImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef MaskImageType::Pointer	MaskImagePointer
typedef itk::Image< unsigned char, itk::VectorImage< PixelScalarType, 3 > ::ImageDimension >	MaskImageType
typedef MaskImageType::IndexType	MaskIndexType
typedef MaskImageType::RegionType	MaskRegionType
typedef MaskImageType::SizeType	MaskSizeType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef MaskedImageToImageFilter	Self
typedef anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >	Superclass
typedef itk::ImageSource< itk::Image< PixelScalarType, 3 > >::ThreadStruct	ThreadStruct
Public Types inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef NumberedThreadImageToImageFilter	Self
typedef itk::ImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >	Superclass
typedef itk::ImageSource< itk::Image< PixelScalarType, 3 > >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
void	SetSampleDirections (std::vector< std::vector< double > > &input)
Public Member Functions inherited from anima::PatientToGroupComparisonImageFilter< PixelScalarType >
void	AddDatabaseInput (InputImageType *tmpIm)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual void	SetExplainedRatio (double _arg)
virtual void	SetNumEigenValuesPCA (unsigned int _arg)
virtual void	SetStatisticalTestType (TestType _arg)
Public Member Functions inherited from anima::MaskedImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual MaskImageType *	GetComputationMask ()
virtual void	SetComputationMask (MaskImagePointer _arg)
Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual OutputImageRegionType	GetComputationRegion ()
virtual void	SetComputationRegion (OutputImageRegionType _arg)
virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from anima::PatientToGroupComparisonImageFilter< PixelScalarType >
static Pointer	New ()
Static Public Member Functions inherited from anima::MaskedImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
static Pointer	New ()
Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
static Pointer	New ()

Protected Member Functions
virtual void	BeforeThreadedGenerateData () ITK_OVERRIDE
	PatientToGroupODFComparisonImageFilter ()
unsigned int	SampleFromDiffusionModels (std::vector< VectorType > &databaseValues, VectorType &patientVectorValue) ITK_OVERRIDE
virtual	~PatientToGroupODFComparisonImageFilter ()
Protected Member Functions inherited from anima::PatientToGroupComparisonImageFilter< PixelScalarType >
void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
	PatientToGroupComparisonImageFilter ()
virtual	~PatientToGroupComparisonImageFilter ()
Protected Member Functions inherited from anima::MaskedImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
virtual void	CheckComputationMask ()
void	InitializeComputationRegionFromMask ()
	MaskedImageToImageFilter ()
virtual	~MaskedImageToImageFilter ()
Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
virtual void	GenerateData () ITK_OVERRIDE
unsigned int	GetSafeThreadId ()
void	IncrementNumberOfProcessedPoints ()
void	InitializeZeroPixel (itk::Image< PixelScalarType, 3 > *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...
void	InitializeZeroPixel (itk::Image< PixelScalarType, 3 > *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...
	NumberedThreadImageToImageFilter ()
void	SafeReleaseThreadId (unsigned int threadId)
virtual void	ThreadProcessSlices ()
virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
static constexpr unsigned int	OutputImageDimension
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< PixelScalarType, 3 >, itk::Image< PixelScalarType, 3 > >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<class PixelScalarType>
class anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >

Definition at line 10 of file animaPatientToGroupODFComparisonImageFilter.h.

Member Typedef Documentation

ConstPointer

template<class PixelScalarType >

typedef itk::SmartPointer<const Self> anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::ConstPointer

Definition at line 17 of file animaPatientToGroupODFComparisonImageFilter.h.

Pointer

template<class PixelScalarType >

typedef itk::SmartPointer<Self> anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::Pointer

Definition at line 16 of file animaPatientToGroupODFComparisonImageFilter.h.

Self

template<class PixelScalarType >

typedef anima::PatientToGroupODFComparisonImageFilter<PixelScalarType> anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::Self

Standard class typedefs.

Definition at line 15 of file animaPatientToGroupODFComparisonImageFilter.h.

Superclass

template<class PixelScalarType >

typedef anima::PatientToGroupComparisonImageFilter<PixelScalarType> anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::Superclass

Definition at line 19 of file animaPatientToGroupODFComparisonImageFilter.h.

VectorType

template<class PixelScalarType >

typedef Superclass::VectorType anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::VectorType

Definition at line 20 of file animaPatientToGroupODFComparisonImageFilter.h.

Constructor & Destructor Documentation

PatientToGroupODFComparisonImageFilter()

template<class PixelScalarType >

anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::PatientToGroupODFComparisonImageFilter ( )

inlineprotected

Definition at line 31 of file animaPatientToGroupODFComparisonImageFilter.h.

~PatientToGroupODFComparisonImageFilter()

template<class PixelScalarType >

virtual anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::~PatientToGroupODFComparisonImageFilter ( )

inlineprotectedvirtual

Definition at line 38 of file animaPatientToGroupODFComparisonImageFilter.h.

References anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::BeforeThreadedGenerateData(), and anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::SampleFromDiffusionModels().

Member Function Documentation

BeforeThreadedGenerateData()

template<class PixelScalarType >

void anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::BeforeThreadedGenerateData ( )

protectedvirtual

Reimplemented from anima::PatientToGroupComparisonImageFilter< PixelScalarType >.

Definition at line 10 of file animaPatientToGroupODFComparisonImageFilter.hxx.

References anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::SampleFromDiffusionModels().

Referenced by anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::~PatientToGroupODFComparisonImageFilter().

CreateAnother()

template<class PixelScalarType >

virtual::itk::LightObject::Pointer anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::CreateAnother

(

void

)

const

GetNameOfClass()

template<class PixelScalarType >

virtual const char* anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from anima::PatientToGroupComparisonImageFilter< PixelScalarType >.

New()

template<class PixelScalarType >

static Pointer anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::New ( )

static

Method for creation through the object factory.

Referenced by anima::LowMemoryPatientToGroupODFComparisonBridge::Update().

SampleFromDiffusionModels()

template<class PixelScalarType >

unsigned int anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::SampleFromDiffusionModels ( std::vector< VectorType > &  databaseValues, VectorType &  patientVectorValue  )

protectedvirtual

Reimplemented from anima::PatientToGroupComparisonImageFilter< PixelScalarType >.

Definition at line 26 of file animaPatientToGroupODFComparisonImageFilter.hxx.

Referenced by anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::BeforeThreadedGenerateData(), and anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::~PatientToGroupODFComparisonImageFilter().

SetSampleDirections()

template<class PixelScalarType >

void anima::PatientToGroupODFComparisonImageFilter< PixelScalarType >::SetSampleDirections ( std::vector< std::vector< double > > &  input )

inline

Definition at line 28 of file animaPatientToGroupODFComparisonImageFilter.h.

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The documentation for this class was generated from the following files:

• animaPatientToGroupODFComparisonImageFilter.h
• animaPatientToGroupODFComparisonImageFilter.hxx