Class computing the 3-class GMM respresenting the NABT, where each Gaussian represents one of the brain tissues WM, GM and CSF. First a model initializer is launched, then the REM algorithm is performed using this initialization. The NABT model can be written in a csv file. More...

#include <animaComputeSolution.h>

Inheritance diagram for anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >:

Collaboration diagram for anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >:

Public Types
typedef AtlasInitializer< ImageTypeUC, MaskImageType, TAtlasImage >	AtlasInitializerType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef GaussianEMEstimator< ImageTypeUC, MaskImageType >	GaussianEMEstimatorType

typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType >	GaussianFunctionType

typedef GaussianREMEstimator< ImageTypeUC, MaskImageType >	GaussianREMEstimatorType

typedef HierarchicalInitializer< ImageTypeUC, MaskImageType >	HierarchicalType

typedef ImageTypeUC::Pointer	ImagePointerUC

typedef itk::Image< PixelTypeUC, 3 >	ImageTypeUC

typedef itk::ImageRegionConstIterator< InputImageType >	InputConstIteratorType

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef TInputImage	InputImageType

typedef TMaskImage	MaskImageType

typedef itk::VariableLengthVector< NumericType >	MeasurementVectorType

typedef double	NumericType

typedef unsigned char	PixelTypeUC

typedef itk::SmartPointer< Self >	Pointer

typedef itk::RescaleIntensityImageFilter< TInputImage, ImageTypeUC >	RescaleFilterType

typedef ComputeSolution	Self

typedef itk::ProcessObject	Superclass

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

std::vector< double >	GetAlphas ()

virtual bool	GetEM_before_concentration ()

virtual int	GetEmIter ()

virtual int	GetEmIter_concentration ()

std::vector< GaussianFunctionType::Pointer >	GetGaussianModel ()

virtual unsigned int	GetInitMethodType ()

virtual double	GetMinDistance ()

virtual const char *	GetNameOfClass () const

virtual double	GetRejRatio ()

virtual double	GetRejRatioHierar ()

virtual double	GetTol ()

virtual bool	GetUseDP ()

virtual bool	GetUseFLAIR ()

virtual bool	GetUseT2 ()

virtual bool	GetVerbose ()

int	PrintSolution (std::vector< double > alphas, std::vector< GaussianFunctionType::Pointer > model)

int	ReadSolution (std::string filename)

void	SetAlphas (std::vector< double > alpha)

virtual void	SetEM_before_concentration (bool _arg)

virtual void	SetEmIter (int _arg)

virtual void	SetEmIter_concentration (int _arg)

void	SetGaussianModel (std::vector< GaussianFunctionType::Pointer > model)

virtual void	SetInitMethodType (unsigned int _arg)

void	SetInputCSFAtlas (const TAtlasImage *atlas)

void	SetInputGMAtlas (const TAtlasImage *atlas)

void	SetInputImage1 (const InputImageType *image)

void	SetInputImage2 (const InputImageType *image)

void	SetInputImage3 (const InputImageType *image)

void	SetInputWMAtlas (const TAtlasImage *atlas)

void	SetMask (const TMaskImage *mask)

virtual void	SetMinDistance (double _arg)

virtual void	SetRejRatio (double _arg)

virtual void	SetRejRatioHierar (double _arg)

void	SetSolutionReadFilename (std::string filename)

void	SetSolutionWriteFilename (std::string filename)

virtual void	SetTol (double _arg)

virtual void	SetUseDP (bool _arg)

virtual void	SetUseFLAIR (bool _arg)

virtual void	SetUseT2 (bool _arg)

virtual void	SetVerbose (bool _arg)

void	SortGaussianModel ()

virtual void	Update () ITK_OVERRIDE

void	WriteOutputs ()

int	WriteSolution (std::string filename)

Static Public Member Functions
static void	eventCallback (itk::Object caller, const itk::EventObject &event, void clientData)

static Pointer	New ()

Protected Member Functions
void	CheckInputs (void)

	ComputeSolution ()

TAtlasImage::ConstPointer	GetInputCSFAtlas ()

TAtlasImage::ConstPointer	GetInputGMAtlas ()

InputImageType::ConstPointer	GetInputImage1 ()

InputImageType::ConstPointer	GetInputImage2 ()

InputImageType::ConstPointer	GetInputImage3 ()

TAtlasImage::ConstPointer	GetInputWMAtlas ()

MaskImageType::ConstPointer	GetMask ()

void	RescaleImages (void)

virtual	~ComputeSolution ()

Detailed Description

template<typename TInputImage, typename TMaskImage, typename TAtlasImage = TInputImage>
class anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >

Class computing the 3-class GMM respresenting the NABT, where each Gaussian represents one of the brain tissues WM, GM and CSF. First a model initializer is launched, then the REM algorithm is performed using this initialization. The NABT model can be written in a csv file.

Definition at line 26 of file animaComputeSolution.h.

Member Typedef Documentation

◆ AtlasInitializerType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef AtlasInitializer<ImageTypeUC,MaskImageType,TAtlasImage> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::AtlasInitializerType

Definition at line 54 of file animaComputeSolution.h.

◆ ConstPointer

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::SmartPointer<const Self> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ConstPointer

Definition at line 34 of file animaComputeSolution.h.

◆ GaussianEMEstimatorType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef GaussianEMEstimator<ImageTypeUC,MaskImageType> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GaussianEMEstimatorType

Definition at line 57 of file animaComputeSolution.h.

◆ GaussianFunctionType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::Statistics::GaussianMembershipFunction< MeasurementVectorType > anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GaussianFunctionType

Definition at line 64 of file animaComputeSolution.h.

◆ GaussianREMEstimatorType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef GaussianREMEstimator<ImageTypeUC,MaskImageType> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GaussianREMEstimatorType

Definition at line 56 of file animaComputeSolution.h.

◆ HierarchicalType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef HierarchicalInitializer<ImageTypeUC,MaskImageType> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::HierarchicalType

Definition at line 55 of file animaComputeSolution.h.

◆ ImagePointerUC

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef ImageTypeUC::Pointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ImagePointerUC

Definition at line 52 of file animaComputeSolution.h.

◆ ImageTypeUC

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::Image<PixelTypeUC,3> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ImageTypeUC

Definition at line 51 of file animaComputeSolution.h.

◆ InputConstIteratorType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::ImageRegionConstIterator< InputImageType > anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::InputConstIteratorType

Definition at line 45 of file animaComputeSolution.h.

◆ InputImageConstPointer

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef InputImageType::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::InputImageConstPointer

Definition at line 44 of file animaComputeSolution.h.

◆ InputImageType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef TInputImage anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::InputImageType

Type of the input image.

Definition at line 43 of file animaComputeSolution.h.

◆ MaskImageType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef TMaskImage anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::MaskImageType

Type of the output images.

Definition at line 48 of file animaComputeSolution.h.

◆ MeasurementVectorType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::VariableLengthVector<NumericType> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::MeasurementVectorType

Definition at line 63 of file animaComputeSolution.h.

◆ NumericType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef double anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::NumericType

Definition at line 62 of file animaComputeSolution.h.

◆ PixelTypeUC

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef unsigned char anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::PixelTypeUC

Definition at line 50 of file animaComputeSolution.h.

◆ Pointer

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::SmartPointer<Self> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::Pointer

Definition at line 33 of file animaComputeSolution.h.

◆ RescaleFilterType

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::RescaleIntensityImageFilter<TInputImage,ImageTypeUC> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::RescaleFilterType

Define filter types.

Definition at line 60 of file animaComputeSolution.h.

◆ Self

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef ComputeSolution anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::Self

Standard class typedefs.

Definition at line 31 of file animaComputeSolution.h.

◆ Superclass

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

typedef itk::ProcessObject anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::Superclass

Definition at line 32 of file animaComputeSolution.h.

Constructor & Destructor Documentation

◆ ComputeSolution()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ComputeSolution ( )

inlineprotected

Definition at line 142 of file animaComputeSolution.h.

◆ ~ComputeSolution()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution ( )

inlineprotectedvirtual

Definition at line 167 of file animaComputeSolution.h.

Member Function Documentation

◆ CheckInputs()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::CheckInputs ( void )

protected

Definition at line 132 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ CreateAnother()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual::itk::LightObject::Pointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::CreateAnother ( void ) const

◆ eventCallback()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

static void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::eventCallback	(	itk::Object *	caller,
		const itk::EventObject &	event,
		void *	clientData
	)

inlinestatic

Definition at line 99 of file animaComputeSolution.h.

◆ GetAlphas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

std::vector<double> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetAlphas ( )

inline

Definition at line 89 of file animaComputeSolution.h.

◆ GetEM_before_concentration()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual bool anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetEM_before_concentration ( )

virtual

◆ GetEmIter()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetEmIter ( )

virtual

◆ GetEmIter_concentration()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetEmIter_concentration ( )

virtual

◆ GetGaussianModel()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

std::vector<GaussianFunctionType::Pointer> anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetGaussianModel ( )

inline

Definition at line 86 of file animaComputeSolution.h.

◆ GetInitMethodType()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual unsigned int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInitMethodType ( )

virtual

◆ GetInputCSFAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TAtlasImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputCSFAtlas ( )

protected

Definition at line 81 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetInputGMAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TAtlasImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputGMAtlas ( )

protected

Definition at line 88 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetInputImage1()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TInputImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputImage1 ( )

protected

Definition at line 60 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetInputImage2()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TInputImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputImage2 ( )

protected

Definition at line 67 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetInputImage3()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TInputImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputImage3 ( )

protected

Definition at line 74 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetInputWMAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TAtlasImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetInputWMAtlas ( )

protected

Definition at line 95 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetMask()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

TMaskImage::ConstPointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetMask ( )

protected

Definition at line 53 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ GetMinDistance()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual double anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetMinDistance ( )

virtual

◆ GetNameOfClass()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual const char* anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

◆ GetRejRatio()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual double anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetRejRatio ( )

virtual

◆ GetRejRatioHierar()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual double anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetRejRatioHierar ( )

virtual

◆ GetTol()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual double anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetTol ( )

virtual

◆ GetUseDP()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual bool anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetUseDP ( )

virtual

◆ GetUseFLAIR()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual bool anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetUseFLAIR ( )

virtual

◆ GetUseT2()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual bool anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetUseT2 ( )

virtual

◆ GetVerbose()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual bool anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::GetVerbose ( )

virtual

◆ New()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

static Pointer anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::New ( )

static

Method for creation through the object factory.

◆ PrintSolution()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::PrintSolution	(	std::vector< double >	alphas,
		std::vector< GaussianFunctionType::Pointer >	model
	)

Definition at line 345 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas().

◆ ReadSolution()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ReadSolution ( std::string filename )

Definition at line 272 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas().

◆ RescaleImages()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::RescaleImages ( void )

protected

Definition at line 178 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::~ComputeSolution().

◆ SetAlphas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas ( std::vector< double > alpha )

inline

Definition at line 90 of file animaComputeSolution.h.

References anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::PrintSolution(), anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::ReadSolution(), anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SortGaussianModel(), anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::Update(), and anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::WriteSolution().

◆ SetEM_before_concentration()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetEM_before_concentration ( bool _arg )

virtual

◆ SetEmIter()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetEmIter ( int _arg )

virtual

◆ SetEmIter_concentration()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetEmIter_concentration ( int _arg )

virtual

◆ SetGaussianModel()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetGaussianModel ( std::vector< GaussianFunctionType::Pointer > model )

inline

Definition at line 87 of file animaComputeSolution.h.

◆ SetInitMethodType()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInitMethodType ( unsigned int _arg )

virtual

◆ SetInputCSFAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputCSFAtlas ( const TAtlasImage * atlas )

Images for atlas initialisation

Definition at line 33 of file animaComputeSolution.hxx.

◆ SetInputGMAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputGMAtlas ( const TAtlasImage * atlas )

Definition at line 39 of file animaComputeSolution.hxx.

◆ SetInputImage1()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputImage1 ( const InputImageType * image )

The mri images.

Definition at line 15 of file animaComputeSolution.hxx.

◆ SetInputImage2()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputImage2 ( const InputImageType * image )

Definition at line 21 of file animaComputeSolution.hxx.

◆ SetInputImage3()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputImage3 ( const InputImageType * image )

Definition at line 27 of file animaComputeSolution.hxx.

◆ SetInputWMAtlas()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetInputWMAtlas ( const TAtlasImage * atlas )

Definition at line 45 of file animaComputeSolution.hxx.

◆ SetMask()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetMask ( const TMaskImage * mask )

mask in which the segmentation will be performed

Definition at line 9 of file animaComputeSolution.hxx.

◆ SetMinDistance()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetMinDistance ( double _arg )

virtual

◆ SetRejRatio()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetRejRatio ( double _arg )

virtual

◆ SetRejRatioHierar()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetRejRatioHierar ( double _arg )

virtual

◆ SetSolutionReadFilename()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetSolutionReadFilename ( std::string filename )

inline

Definition at line 82 of file animaComputeSolution.h.

References anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::WriteOutputs().

◆ SetSolutionWriteFilename()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetSolutionWriteFilename ( std::string filename )

inline

Definition at line 81 of file animaComputeSolution.h.

◆ SetTol()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetTol ( double _arg )

virtual

◆ SetUseDP()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetUseDP ( bool _arg )

virtual

◆ SetUseFLAIR()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetUseFLAIR ( bool _arg )

virtual

◆ SetUseT2()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetUseT2 ( bool _arg )

virtual

◆ SetVerbose()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

virtual void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetVerbose ( bool _arg )

virtual

◆ SortGaussianModel()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SortGaussianModel ( )

Definition at line 104 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas().

◆ Update()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::Update ( )

virtual

Definition at line 374 of file animaComputeSolution.hxx.

References eventCallback().

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas().

◆ WriteOutputs()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage = TInputImage>

void anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::WriteOutputs ( )

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetSolutionReadFilename().

◆ WriteSolution()

template<typename TInputImage , typename TMaskImage , typename TAtlasImage >

int anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::WriteSolution ( std::string filename )

Definition at line 215 of file animaComputeSolution.hxx.

Referenced by anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >::SetAlphas().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

template<typename TInputImage, typename TMaskImage, typename TAtlasImage = TInputImage> class anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >

Member Typedef Documentation

◆ AtlasInitializerType

◆ ConstPointer

◆ GaussianEMEstimatorType

◆ GaussianFunctionType

◆ GaussianREMEstimatorType

◆ HierarchicalType

◆ ImagePointerUC

◆ ImageTypeUC

◆ InputConstIteratorType

◆ InputImageConstPointer

◆ InputImageType

◆ MaskImageType

◆ MeasurementVectorType

◆ NumericType

◆ PixelTypeUC

◆ Pointer

◆ RescaleFilterType

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ ComputeSolution()

◆ ~ComputeSolution()

Member Function Documentation

◆ CheckInputs()

◆ CreateAnother()

◆ eventCallback()

◆ GetAlphas()

◆ GetEM_before_concentration()

◆ GetEmIter()

◆ GetEmIter_concentration()

◆ GetGaussianModel()

◆ GetInitMethodType()

◆ GetInputCSFAtlas()

◆ GetInputGMAtlas()

◆ GetInputImage1()

◆ GetInputImage2()

◆ GetInputImage3()

◆ GetInputWMAtlas()

◆ GetMask()

◆ GetMinDistance()

◆ GetNameOfClass()

◆ GetRejRatio()

◆ GetRejRatioHierar()

◆ GetTol()

◆ GetUseDP()

◆ GetUseFLAIR()

◆ GetUseT2()

◆ GetVerbose()

◆ New()

◆ PrintSolution()

◆ ReadSolution()

◆ RescaleImages()

◆ SetAlphas()

◆ SetEM_before_concentration()

◆ SetEmIter()

◆ SetEmIter_concentration()

◆ SetGaussianModel()

◆ SetInitMethodType()

◆ SetInputCSFAtlas()

◆ SetInputGMAtlas()

◆ SetInputImage1()

◆ SetInputImage2()

◆ SetInputImage3()

◆ SetInputWMAtlas()

◆ SetMask()

◆ SetMinDistance()

◆ SetRejRatio()

◆ SetRejRatioHierar()

◆ SetSolutionReadFilename()

◆ SetSolutionWriteFilename()

◆ SetTol()

◆ SetUseDP()

◆ SetUseFLAIR()

template<typename TInputImage, typename TMaskImage, typename TAtlasImage = TInputImage>
class anima::ComputeSolution< TInputImage, TMaskImage, TAtlasImage >