File List

Here is a list of all files with brief descriptions:

animaAnatomicalBlockMatcher.h
animaAnatomicalBlockMatcher.hxx
animaApplyDistortionCorrection.cxx
animaApplyTransformSerie.cxx
animaApproximateMCMSmoothingCostFunction.cxx
animaApproximateMCMSmoothingCostFunction.h
animaAsymmetricBMRegistrationMethod.h
animaAsymmetricBMRegistrationMethod.hxx
animaAtlasInitializer.h
animaAtlasInitializer.hxx
animaAverageImages.cxx
animaAxisRotationTransform.h
animaAxisRotationTransform.hxx
animaB1GammaDerivativeDistributionIntegrand.cxx
animaB1GammaDerivativeDistributionIntegrand.h
animaB1GammaDistributionIntegrand.cxx
animaB1GammaDistributionIntegrand.h
animaB1GammaMixtureT2RelaxometryCostFunction.cxx
animaB1GammaMixtureT2RelaxometryCostFunction.h
animaB1GMMDistributionIntegrand.cxx
animaB1GMMDistributionIntegrand.h
animaB1GMMRelaxometryCostFunction.cxx
animaB1GMMRelaxometryCostFunction.h
animaB1T2RelaxometryDistributionCostFunction.cxx
animaB1T2RelaxometryDistributionCostFunction.h
animaBalooExternalExtrapolateImageFilter.h
animaBalooExternalExtrapolateImageFilter.hxx
animaBalooSVFTransformAgregator.h
animaBalooSVFTransformAgregator.hxx
animaBaseAffineBlockMatcher.h
animaBaseAffineBlockMatcher.hxx
animaBaseBlockMatcher.h
animaBaseBlockMatcher.hxx
animaBaseBMRegistrationMethod.h
animaBaseBMRegistrationMethod.hxx
animaBaseCompartment.cxx
animaBaseCompartment.h
animaBaseIsotropicCompartment.cxx
animaBaseIsotropicCompartment.h
animaBaseMCMCost.cxx
animaBaseMCMCost.h
animaBaseOrientedModelImageToImageMetric.h
animaBaseOrientedModelImageToImageMetric.hxx
animaBaseProbabilisticTractographyImageFilter.h
animaBaseProbabilisticTractographyImageFilter.hxx
animaBaseRootFindingAlgorithm.cxx
animaBaseRootFindingAlgorithm.h
animaBaseTensorTools.h
animaBaseTensorTools.hxx
animaBaseTractographyImageFilter.cxx
animaBaseTractographyImageFilter.h
animaBaseTransformAgregator.h
animaBaseTransformAgregator.hxx
animaBesselFunctions.cxx
animaBesselFunctions.h
animaBisectionRootFindingAlgorithm.cxx
animaBisectionRootFindingAlgorithm.h
animaBLMLambdaCostFunction.cxx
animaBLMLambdaCostFunction.h
animaBlock.h
animaBlockMatchInitializer.h
animaBlockMatchInitializer.hxx
animaBMDistortionCorrection.cxx
animaBobyqaOptimizer.cxx
animaBobyqaOptimizer.h
animaBoostBisectionRootFindingAlgorithm.cxx
animaBoostBisectionRootFindingAlgorithm.h
animaBoundedLevenbergMarquardtOptimizer.cxx
animaBoundedLevenbergMarquardtOptimizer.h
animaBracketAndSolveRootFindingAlgorithm.cxx
animaBracketAndSolveRootFindingAlgorithm.h
animaBrentRootFindingAlgorithm.cxx
animaBrentRootFindingAlgorithm.h
animaBuildSamplesFromVolumes.cxx
animaBVLSOptimizer.cxx
animaBVLSOptimizer.h
animaBVLSOptimizerTest.cxx
animaCheckStructureNeighborFilter.h
animaCheckStructureNeighborFilter.hxx
animaCholeskyDecomposition.cxx
animaCholeskyDecomposition.h
animaClassificationStrategy.h
animaClassificationStrategy.hxx
animaCollapseImage.cxx
animaComputeDTIScalarMaps.cxx
animaComputeMahalanobisImagesFilter.h
animaComputeMahalanobisImagesFilter.hxx
animaComputeSolution.h
animaComputeSolution.hxx
animaConcatenateImages.cxx
animaConnectedComponents.cxx
animaConvertImage.cxx
animaConvertShape.cxx
animaCreateImage.cxx
animaCropImage.cxx
animaCubicInterpolation.h
animaCubicInterpolation.hxx
animaDekkerRootFindingAlgorithm.cxx
animaDekkerRootFindingAlgorithm.h
animaDenseMCMSVFBMRegistration.cxx
animaDenseSVFBMRegistration.cxx
animaDenseSVFTransformAgregator.h
animaDenseSVFTransformAgregator.hxx
animaDenseTensorSVFBMRegistration.cxx
animaDenseTransformArithmetic.cxx
animaDetectedComponents.cxx
animaDiceMeasure.cxx
animaDirectionScaleSkewTransform.h
animaDirectionScaleSkewTransform.hxx
animaDisplacementFieldJacobian.cxx
animaDistanceMap.cxx
animaDistortionCorrection.cxx
animaDistortionCorrectionBlockMatcher.h
animaDistortionCorrectionBlockMatcher.hxx
animaDistortionCorrectionBMRegistrationMethod.h
animaDistortionCorrectionBMRegistrationMethod.hxx
animaDistortionCorrectionImageFilter.h
animaDistortionCorrectionImageFilter.hxx
animaDistributionSampling.h
animaDistributionSampling.hxx
animaDTIEstimationImageFilter.h
animaDTIEstimationImageFilter.hxx
animaDTIEstimator.cxx
animaDTIProbabilisticTractography.cxx
animaDTIProbabilisticTractographyImageFilter.cxx
animaDTIProbabilisticTractographyImageFilter.h
animaDTIScalarMapsImageFilter.h
animaDTIScalarMapsImageFilter.hxx
animaDTITractography.cxx
animaDTITractographyImageFilter.cxx
animaDTITractographyImageFilter.h
animaDWISimulatorFromDTI.cxx
animaDWISimulatorFromDTIImageFilter.h
animaDWISimulatorFromDTIImageFilter.hxx
animaEddyCurrentCorrection.cxx
animaEPGSignalSimulator.cxx
animaEPGSignalSimulator.h
animaErrorFunctions.cxx
animaErrorFunctions.h
animaExpTensorImageFilter.h
animaExpTensorImageFilter.hxx
animaExpTensors.cxx
animaFastCorrelationImageToImageMetric.h
animaFastCorrelationImageToImageMetric.hxx
animaFastMeanSquaresImageToImageMetric.h
animaFastMeanSquaresImageToImageMetric.hxx
animaFDRCorrectImageFilter.h
animaFDRCorrectImageFilter.hxx
animaFDRCorrection.cxx
animaFDRCorrection.h
animaFDRCorrectPValues.cxx
animaFibersApplyTransformSerie.cxx
animaFibersCounter.cxx
animaFibersFilterer.cxx
animaFillHoleImage.cxx
animaFlipTensorImageFilter.h
animaFlipTensorImageFilter.hxx
animaFlipTensors.cxx
animaFreeWaterCompartment.cxx
animaFreeWaterCompartment.h
animaFuzzyCMeansFilter.h
animaFuzzyCMeansFilter.hxx
animaFuzzyDiceMeasure.cxx
animaGammaFunctions.cxx
animaGammaFunctions.h
animaGammaMixtureT2RelaxometryEstimation.cxx
animaGammaMixtureT2RelaxometryEstimationImageFilter.h
animaGammaMixtureT2RelaxometryEstimationImageFilter.hxx
animaGaussianEMEstimator.h
animaGaussianEMEstimator.hxx
animaGaussianMCMCost.cxx
animaGaussianMCMCost.h
animaGaussianMCMVariableProjectionCost.cxx
animaGaussianMCMVariableProjectionCost.h
animaGaussianMCMVariableProjectionMultipleValuedCostFunction.cxx
animaGaussianMCMVariableProjectionMultipleValuedCostFunction.h
animaGaussianMCMVariableProjectionSingleValuedCostFunction.cxx
animaGaussianMCMVariableProjectionSingleValuedCostFunction.h
animaGaussianREMEstimator.h
animaGaussianREMEstimator.hxx
animaGaussLaguerreQuadrature.cxx
animaGaussLaguerreQuadrature.h
animaGaussLaguerreTest.cxx
animaGcStremMsLesionsSegmentation.cxx
animaGcStremMsLesionsSegmentationFilter.h
animaGcStremMsLesionsSegmentationFilter.hxx
animaGeneralizedFA.cxx
animaGeneralizedFAImageFilter.h
animaGeneralizedFAImageFilter.hxx
animaGMMT2RelaxometryEstimation.cxx
animaGMMT2RelaxometryEstimationImageFilter.h
animaGMMT2RelaxometryEstimationImageFilter.hxx
animaGradientFileReader.h
animaGradientFileReader.hxx
animaGraph.h
animaGraph3DFilter.h
animaGraph3DFilter.hxx
animaGraphCut.cxx
animaGraphCutFilter.h
animaGraphCutFilter.hxx
animaHierarchicalInitializer.h
animaHierarchicalInitializer.hxx
animaHyperbolicFunctions.h
animaHyperbolicFunctions.hxx
animaImageArithmetic.cxx
animaImageClassifierFilter.h
animaImageClassifierFilter.hxx
animaImageDataSplitter.h
animaImageDataSplitter.hxx
animaImageMosaicing.cxx
animaImageResolutionChanger.cxx
animaImageSmoother.cxx
animaInfluenceZones.cxx
animaIsosurface.cxx
animaIsotropicRestrictedWaterCompartment.cxx
animaIsotropicRestrictedWaterCompartment.h
animaJacobianMatrixImageFilter.h
animaJacobianMatrixImageFilter.hxx
animaKissingSymmetricBMRegistrationMethod.h
animaKissingSymmetricBMRegistrationMethod.hxx
animaKMeansClustering.cxx
animaKMeansFilter.h
animaKMeansFilter.hxx
animaKummerFunctions.cxx
animaKummerFunctions.h
animaLegendreDerivatives.cxx
animaLegendreDerivatives.h
animaLesionEvolutionDetection.cxx
animaLinearTransformArithmetic.cxx
animaLinearTransformEstimationTools.h
animaLinearTransformEstimationTools.hxx
animaLinearTransformToSVF.cxx
animaLocalPatchCovarianceDistance.cxx
animaLocalPatchCovarianceDistanceImageFilter.h
animaLocalPatchCovarianceDistanceImageFilter.hxx
animaLocalPatchMeanDistance.cxx
animaLocalPatchMeanDistanceImageFilter.h
animaLocalPatchMeanDistanceImageFilter.hxx
animaLogarithmFunctions.h
animaLogarithmFunctions.hxx
animaLogExpMapsUnitSphere.h
animaLogExpMapsUnitSphere.hxx
animaLogRigid3DTransform.h
animaLogRigid3DTransform.hxx
animaLogTensorImageFilter.h
animaLogTensorImageFilter.hxx
animaLogTensors.cxx
animaLowMemLocalPatchCovarianceDistance.cxx
animaLowMemLocalPatchCovarianceDistanceBridge.cxx
animaLowMemLocalPatchCovarianceDistanceBridge.h
animaLowMemLocalPatchMeanDistance.cxx
animaLowMemLocalPatchMeanDistanceBridge.cxx
animaLowMemLocalPatchMeanDistanceBridge.h
animaLowMemNLMeansPatientToGroupComparison.cxx
animaLowMemNLMeansPatientToGroupComparisonBridge.cxx
animaLowMemNLMeansPatientToGroupComparisonBridge.h
animaLowMemPatientToGroupComparison.cxx
animaLowMemPatientToGroupComparisonBridge.cxx
animaLowMemPatientToGroupComparisonBridge.h
animaLowMemPatientToGroupODFComparison.cxx
animaLowMemPatientToGroupODFComparisonBridge.cxx
animaLowMemPatientToGroupODFComparisonBridge.h
animaLSWTransformAgregator.h
animaLSWTransformAgregator.hxx
animaLTSWTransformAgregator.h
animaLTSWTransformAgregator.hxx
animaMajorityLabelVoting.cxx
animaMajorityLabelVotingImageFilter.h
animaMajorityLabelVotingImageFilter.hxx
animaMaskedImageToImageFilter.h
animaMaskedImageToImageFilter.hxx
animaMaskImage.cxx
animaMatrixLogExp.h
animaMatrixLogExp.hxx
animaMatrixOperations.h
animaMatrixOperations.hxx
animaMCMApplyTransformSerie.cxx
animaMCMAverageImages.cxx
animaMCMAverageImagesImageFilter.h
animaMCMAverageImagesImageFilter.hxx
animaMCMBlockMatcher.h
animaMCMBlockMatcher.hxx
animaMCMBlockMatchInitializer.h
animaMCMBlockMatchInitializer.hxx
animaMCMConstants.h
animaMCMCorrelationImageToImageMetric.h
animaMCMCorrelationImageToImageMetric.hxx
animaMCMEstimator.cxx
animaMCMEstimatorImageFilter.h
animaMCMEstimatorImageFilter.hxx
animaMCMFileReader.cxx
animaMCMFileReader.h
animaMCMFileReader.hxx
animaMCMFileWriter.h
animaMCMFileWriter.hxx
animaMCMImage.h
animaMCMImage.hxx
animaMCML2DistanceComputer.cxx
animaMCML2DistanceComputer.h
animaMCMLinearInterpolateImageFunction.h
animaMCMLinearInterpolateImageFunction.hxx
animaMCMMeanSquaresImageToImageMetric.h
animaMCMMeanSquaresImageToImageMetric.hxx
animaMCMMeasureTest.cxx
animaMCMMultipleValuedCostFunction.cxx
animaMCMMultipleValuedCostFunction.h
animaMCMPairingMeanSquaresImageToImageMetric.h
animaMCMPairingMeanSquaresImageToImageMetric.hxx
animaMCMResampleImageFilter.h
animaMCMResampleImageFilter.hxx
animaMCMScalarMaps.cxx
animaMCMScalarMapsImageFilter.h
animaMCMScalarMapsImageFilter.hxx
animaMCMSingleValuedCostFunction.cxx
animaMCMSingleValuedCostFunction.h
animaMCMWeightedAverager.cxx
animaMCMWeightedAverager.h
animaMeanAndVarianceImagesFilter.h
animaMeanAndVarianceImagesFilter.hxx
animaMergeBlockImages.cxx
animaMEstimateSVFImageFilter.h
animaMEstimateSVFImageFilter.hxx
animaMEstTransformAgregator.h
animaMEstTransformAgregator.hxx
animaModelInitializer.h
animaMorphologicalOperations.cxx
animaMTPairingCorrelationImageToImageMetric.h
animaMTPairingCorrelationImageToImageMetric.hxx
animaMultiCompartmentModel.cxx
animaMultiCompartmentModel.h
animaMultiCompartmentModelCreator.cxx
animaMultiCompartmentModelCreator.h
animaMultiT2EPGRelaxometryCostFunction.cxx
animaMultiT2EPGRelaxometryCostFunction.h
animaMultiT2RelaxometryEstimation.cxx
animaMultiT2RelaxometryEstimationImageFilter.h
animaMultiT2RelaxometryEstimationImageFilter.hxx
animaMultiTensorSmoothingCostFunction.cxx
animaMultiTensorSmoothingCostFunction.h
animaN4BiasCorrection.cxx
animaNLinksFilter.h
animaNLinksFilter.hxx
animaNLMeans.cxx
animaNLMeansPatientToGroupComparison.cxx
animaNLMeansPatientToGroupComparisonImageFilter.h
animaNLMeansPatientToGroupComparisonImageFilter.hxx
animaNLMeansTemporal.cxx
animaNLMeansVectorPatchSearcher.h
animaNLMeansVectorPatchSearcher.hxx
animaNLOPTOptimizers.cxx
animaNLOPTOptimizers.h
animaNLOPTParametersConstraintFunction.cxx
animaNLOPTParametersConstraintFunction.h
animaNNLSOptimizer.cxx
animaNNLSOptimizer.h
animaNNLSOptimizerTest.cxx
animaNODDICompartment.cxx
animaNODDICompartment.h
animaNoiseGenerator.cxx
animaNoiseGeneratorImageFilter.h
animaNoiseGeneratorImageFilter.hxx
animaNonLocalMeansImageFilter.h
animaNonLocalMeansImageFilter.hxx
animaNonLocalMeansPatchSearcher.h
animaNonLocalMeansPatchSearcher.hxx
animaNonLocalMeansTemporalImageFilter.h
animaNonLocalMeansTemporalImageFilter.hxx
animaNonLocalPatchBaseSearcher.h
animaNonLocalPatchBaseSearcher.hxx
animaNonLocalT2DistributionPatchSearcher.h
animaNonLocalT2DistributionPatchSearcher.hxx
animaNumberedThreadImageToImageFilter.h
animaNumberedThreadImageToImageFilter.hxx
animaNyulStandardization.cxx
animaODFApplyTransformSerie.cxx
animaODFEstimator.cxx
animaODFEstimatorImageFilter.h
animaODFEstimatorImageFilter.hxx
animaODFFunctions.cxx
animaODFFunctions.h
animaODFMaximaCostFunction.cxx
animaODFMaximaCostFunction.h
animaODFProbabilisticTractography.cxx
animaODFProbabilisticTractographyImageFilter.cxx
animaODFProbabilisticTractographyImageFilter.h
animaODFResampleImageFilter.h
animaODFResampleImageFilter.hxx
animaODFSphericalHarmonicBasis.cxx
animaODFSphericalHarmonicBasis.h
animaODFSphericalHarmonicBasis.hxx
animaOrientedModelBaseResampleImageFilter.h
animaOrientedModelBaseResampleImageFilter.hxx
animaOtsuThrImage.cxx
animaPatientToGroupComparison.cxx
animaPatientToGroupComparisonImageFilter.h
animaPatientToGroupComparisonImageFilter.hxx
animaPatientToGroupODFComparison.cxx
animaPatientToGroupODFComparisonImageFilter.h
animaPatientToGroupODFComparisonImageFilter.hxx
animaPyramidalBlockMatchingBridge.h
animaPyramidalBlockMatchingBridge.hxx
animaPyramidalBMRegistration.cxx
animaPyramidalDenseMCMSVFMatchingBridge.h
animaPyramidalDenseMCMSVFMatchingBridge.hxx
animaPyramidalDenseSVFMatchingBridge.h
animaPyramidalDenseSVFMatchingBridge.hxx
animaPyramidalDenseTensorSVFMatchingBridge.h
animaPyramidalDenseTensorSVFMatchingBridge.hxx
animaPyramidalDistortionCorrectionBlockMatchingBridge.h
animaPyramidalDistortionCorrectionBlockMatchingBridge.hxx
animaPyramidalSymmetryBridge.h
animaPyramidalSymmetryBridge.hxx
animaPyramidalSymmetryConstrainedRegistrationBridge.h
animaPyramidalSymmetryConstrainedRegistrationBridge.hxx
animaPyramidImage.cxx
animaPyramidImageFilter.h
animaPyramidImageFilter.hxx
animaQRDecomposition.h
animaQRDecomposition.hxx
animaQRTest.cxx
animaRandomInitializer.cxx
animaRandomInitializer.h
animaReadWriteFunctions.h
animaRecursiveLineYvvGaussianImageFilter.h
animaRecursiveLineYvvGaussianImageFilter.hxx
animaRemoveTouchingBorder.cxx
animaRemoveTouchingBorderFilter.h
animaRemoveTouchingBorderFilter.hxx
animaReorientation.h
animaResampleImageFilter.h
animaResampleImageFilter.hxx
animaRetrieveImageTypeMacros.h
animaSegmentationMeasuresImageFilter.h
animaSegmentationMeasuresImageFilter.hxx
animaSegPerfAnalyzer.cxx
animaSegPerfApp.cxx
animaSegPerfApp.h
animaSegPerfCAnalyzer.cxx
animaSegPerfCAnalyzer.h
animaSegPerfResults.cxx
animaSegPerfResults.h
animaShapesReader.cxx
animaShapesReader.h
animaShapesWriter.cxx
animaShapesWriter.h
animaSimuBlochCoherentGRE.cxx
animaSimuBlochCoherentGRE.h
animaSimuBlochCoherentGRE.hxx
animaSimuBlochGRE.cxx
animaSimuBlochGRE.h
animaSimuBlochGRE.hxx
animaSimuBlochIR-GRE.cxx
animaSimuBlochIR-GRE.h
animaSimuBlochIR-GRE.hxx
animaSimuBlochIR-SE.cxx
animaSimuBlochIR-SE.h
animaSimuBlochIR-SE.hxx
animaSimuBlochSE.cxx
animaSimuBlochSE.h
animaSimuBlochSE.hxx
animaSimuBlochSP-GRE.cxx
animaSimuBlochSP-GRE.h
animaSimuBlochSP-GRE.hxx
animaSmoothingRecursiveYvvGaussianImageFilter.h
animaSmoothingRecursiveYvvGaussianImageFilter.hxx
animaSpectralClusteringFilter.h
animaSpectralClusteringFilter.hxx
animaSphereAverageTest.cxx
animaSphereOperations.h
animaSphereOperations.hxx
animaSphericalHarmonic.cxx
animaSphericalHarmonic.h
animaSplitAffine3DTransform.h
animaSplitAffine3DTransform.hxx
animaStaniszCompartment.cxx
animaStaniszCompartment.h
animaStationaryWaterCompartment.cxx
animaStationaryWaterCompartment.h
animaStickCompartment.cxx
animaStickCompartment.h
animaStimulatedSpinEchoImageFilter.h
animaStimulatedSpinEchoImageFilter.hxx
animaStimulatedSpinEchoSimulator.cxx
animaSVFExponentialImageFilter.h
animaSVFExponentialImageFilter.hxx
animaSVFLieBracketImageFilter.h
animaSVFLieBracketImageFilter.hxx
animaSymmetricBMRegistrationMethod.h
animaSymmetricBMRegistrationMethod.hxx
animaSymmetryConstrainedRegistration.cxx
animaSymmetryPlane.cxx
animaSymmetryPlaneTransform.h
animaSymmetryPlaneTransform.hxx
animaT1RelaxometryEstimation.cxx
animaT1RelaxometryEstimationImageFilter.h
animaT1RelaxometryEstimationImageFilter.hxx
animaT1SERelaxometryCostFunction.cxx
animaT1SERelaxometryCostFunction.h
animaT1SERelaxometryEstimation.cxx
animaT1SERelaxometryEstimationImageFilter.h
animaT1SERelaxometryEstimationImageFilter.hxx
animaT2EPGRelaxometryCostFunction.cxx
animaT2EPGRelaxometryCostFunction.h
animaT2EPGRelaxometryEstimation.cxx
animaT2EPGRelaxometryEstimationImageFilter.h
animaT2EPGRelaxometryEstimationImageFilter.hxx
animaT2RelaxometryCostFunction.cxx
animaT2RelaxometryCostFunction.h
animaT2RelaxometryEstimation.cxx
animaT2RelaxometryEstimationImageFilter.h
animaT2RelaxometryEstimationImageFilter.hxx
animaTensorApplyTransformSerie.cxx
animaTensorBlockMatcher.h
animaTensorBlockMatcher.hxx
animaTensorCompartment.cxx
animaTensorCompartment.h
animaTensorCorrelationImageToImageMetric.h
animaTensorCorrelationImageToImageMetric.hxx
animaTensorGeneralizedCorrelationImageToImageMetric.h
animaTensorGeneralizedCorrelationImageToImageMetric.hxx
animaTensorMeanSquaresImageToImageMetric.h
animaTensorMeanSquaresImageToImageMetric.hxx
animaTensorResampleImageFilter.h
animaTensorResampleImageFilter.hxx
animaThrImage.cxx
animaTLinksFilter.h
animaTLinksFilter.hxx
animaTOMS748RootFindingAlgorithm.cxx
animaTOMS748RootFindingAlgorithm.h
animaTotalLesionLoad.cxx
animaTransformSeriesReader.h
animaTransformSeriesReader.hxx
animaTransformSerieXmlGenerator.cxx
animaTrigonometricFunctions.h
animaTrigonometricFunctions.hxx
animaVectorImagePatchStatistics.h
animaVectorImagePatchStatistics.hxx
animaVectorizeImages.cxx
animaVectorModelLinearInterpolateImageFunction.h
animaVectorModelLinearInterpolateImageFunction.hxx
animaVectorOperations.h
animaVectorOperations.hxx
animaVelocityUtils.h
animaVelocityUtils.hxx
animaVMFDistribution.h
animaVMFDistribution.hxx
animaVoxelExhaustiveOptimizer.cxx
animaVoxelExhaustiveOptimizer.h
animaWatsonDistribution.h
animaWatsonDistribution.hxx
animaZeppelinCompartment.cxx
animaZeppelinCompartment.h