animaApplyTransformSerie.cxx File Reference

#include <tclap/CmdLine.h>
#include <itkResampleImageFilter.h>
#include <itkMinimumMaximumImageFilter.h>
#include <itkNearestNeighborInterpolateImageFunction.h>
#include <itkLinearInterpolateImageFunction.h>
#include <itkBSplineInterpolateImageFunction.h>
#include <itkWindowedSincInterpolateImageFunction.h>
#include <itkConstantBoundaryCondition.h>
#include <itkImageRegionIterator.h>
#include <itkExtractImageFilter.h>
#include <animaResampleImageFilter.h>
#include <animaTransformSeriesReader.h>
#include <animaReadWriteFunctions.h>
#include <animaRetrieveImageTypeMacros.h>
#include <animaGradientFileReader.h>
#include <itkTransformToDisplacementFieldFilter.h>

Include dependency graph for animaApplyTransformSerie.cxx:

Go to the source code of this file.

Classes
struct	arguments

Functions
template<class ImageType >
void	applyScalarTransfo (itk::ImageIOBase::Pointer geometryImageIO, const arguments &args)
template<class ImageType >
void	applyScalarTransfo4D (itk::ImageIOBase::Pointer geometryImageIO, const arguments &args)
void	applyTransformationToGradients (std::string &inputGradientsFileName, std::string &outputGradientsFileName, const arguments &args)
template<class ImageType >
void	applyVectorTransfo (itk::ImageIOBase::Pointer geometryImageIO, const arguments &args)
template<class ComponentType , int Dimension>
void	checkIfComponentsAreVectors (itk::ImageIOBase::Pointer inputImageIO, itk::ImageIOBase::Pointer geometryImageIO, const arguments &args)
int	main (int ac, const char **av)
template<class ComponentType >
void	retrieveNbDimensions (itk::ImageIOBase::Pointer inputImageIO, itk::ImageIOBase::Pointer geometryImageIO, const arguments &args)

Function Documentation

applyScalarTransfo()

template<class ImageType >

void applyScalarTransfo	(	itk::ImageIOBase::Pointer	geometryImageIO,
		const arguments &	args
	)

Definition at line 336 of file animaApplyTransformSerie.cxx.

References arguments::exponentiationOrder, arguments::input, arguments::interpolation, arguments::invert, arguments::origin, arguments::output, arguments::pthread, anima::TransformSeriesReader< TScalarType, NDimensions >::SetInput(), arguments::spacing, and arguments::transfo.

applyScalarTransfo4D()

template<class ImageType >

void applyScalarTransfo4D	(	itk::ImageIOBase::Pointer	geometryImageIO,
		const arguments &	args
	)

Definition at line 174 of file animaApplyTransformSerie.cxx.

References arguments::exponentiationOrder, arguments::input, arguments::interpolation, arguments::invert, arguments::origin, arguments::output, arguments::pthread, anima::TransformSeriesReader< TScalarType, NDimensions >::SetInput(), arguments::spacing, and arguments::transfo.

applyTransformationToGradients()

void applyTransformationToGradients	(	std::string &	inputGradientsFileName,
		std::string &	outputGradientsFileName,
		const arguments &	args
	)

Definition at line 31 of file animaApplyTransformSerie.cxx.

References arguments::exponentiationOrder, arguments::invert, arguments::pthread, anima::GradientFileReader< GradientType, BValueScalarType >::SetGradientFileName(), anima::TransformSeriesReader< TScalarType, NDimensions >::SetInput(), and arguments::transfo.

Referenced by main().

applyVectorTransfo()

template<class ImageType >

void applyVectorTransfo	(	itk::ImageIOBase::Pointer	geometryImageIO,
		const arguments &	args
	)

Definition at line 100 of file animaApplyTransformSerie.cxx.

References arguments::exponentiationOrder, arguments::input, arguments::interpolation, arguments::invert, arguments::origin, arguments::output, arguments::pthread, anima::TransformSeriesReader< TScalarType, NDimensions >::SetInput(), arguments::spacing, and arguments::transfo.

checkIfComponentsAreVectors()

template<class ComponentType , int Dimension>

void checkIfComponentsAreVectors	(	itk::ImageIOBase::Pointer	inputImageIO,
		itk::ImageIOBase::Pointer	geometryImageIO,
		const arguments &	args
	)

Definition at line 427 of file animaApplyTransformSerie.cxx.

main()

int main	(	int	ac,
		const char **	av
	)

Definition at line 459 of file animaApplyTransformSerie.cxx.

References ANIMA_RETRIEVE_COMPONENT_TYPE, applyTransformationToGradients(), arguments::exponentiationOrder, arguments::geometry, arguments::input, arguments::interpolation, arguments::invert, arguments::output, arguments::pthread, retrieveNbDimensions(), anima::TransformSeriesReader< TScalarType, NDimensions >::SetInput(), and arguments::transfo.

retrieveNbDimensions()

template<class ComponentType >

void retrieveNbDimensions	(	itk::ImageIOBase::Pointer	inputImageIO,
		itk::ImageIOBase::Pointer	geometryImageIO,
		const arguments &	args
	)

Definition at line 447 of file animaApplyTransformSerie.cxx.

Referenced by main().