- a -

• addNoise() : animaNoiseGenerator.cxx
• ApplyGeometryToVectorField() : animaApplyDistortionCorrection.cxx
• applyScalarTransfo() : animaApplyTransformSerie.cxx
• applyScalarTransfo4D() : animaApplyTransformSerie.cxx
• applyTransformationToGradients() : animaApplyTransformSerie.cxx
• ApplyTransformToTracks() : animaFibersApplyTransformSerie.cxx
• applyVectorTransfo() : animaApplyTransformSerie.cxx

- c -

• checkIfComponentsAreVectors() : animaConvertImage.cxx , animaCropImage.cxx , animaApplyTransformSerie.cxx , animaMaskImage.cxx , animaVectorizeImages.cxx
• checkIterationArg() : animaN4BiasCorrection.cxx
• collapse() : animaCollapseImage.cxx
• computeArithmetic() : animaImageArithmetic.cxx
• ComputeKappaPolynomialCoefficients() : animaDTIProbabilisticTractography.cxx
• concatenate() : animaConcatenateImages.cxx
• connectedComponent() : animaConnectedComponents.cxx
• convert() : animaConvertImage.cxx
• convertStringToNumber() : animaN4BiasCorrection.cxx
• ConvertVector() : animaN4BiasCorrection.cxx

- e -

• evaluateOutputType() : animaCropImage.cxx
• eventCallback() : animaDTIEstimator.cxx , animaFlipTensors.cxx , animaT2EPGRelaxometryEstimation.cxx , animaMCMEstimator.cxx , animaDTIProbabilisticTractography.cxx , animaDTITractography.cxx , animaODFProbabilisticTractography.cxx , animaLocalPatchCovarianceDistance.cxx , animaNLMeans.cxx , animaNLMeansTemporal.cxx , animaCropImage.cxx , animaNLMeansPatientToGroupComparison.cxx , animaPatientToGroupComparison.cxx , animaPatientToGroupODFComparison.cxx , animaLocalPatchMeanDistance.cxx , animaN4BiasCorrection.cxx , animaGammaMixtureT2RelaxometryEstimation.cxx , animaGMMT2RelaxometryEstimation.cxx , animaMultiT2RelaxometryEstimation.cxx , animaComputeDTIScalarMaps.cxx
• extract() : animaCropImage.cxx
• extractMaxNumberOfIterationsVector() : animaN4BiasCorrection.cxx

- f -

• FilterTracks() : animaFibersFilterer.cxx
• flipTensors() : animaFlipTensors.cxx

- m -

• main() : animaDTIEstimator.cxx , animaComputeDTIScalarMaps.cxx , animaFlipTensors.cxx , animaSegPerfAnalyzer.cxx , animaMCMEstimator.cxx , animaMCMAverageImages.cxx , animaMCMScalarMaps.cxx , animaODFEstimator.cxx , animaNLMeansTemporal.cxx , animaDTIProbabilisticTractography.cxx , animaDTITractography.cxx , animaFibersCounter.cxx , animaFibersFilterer.cxx , animaODFProbabilisticTractography.cxx , animaN4BiasCorrection.cxx , animaCropImage.cxx , animaSimuBlochSP-GRE.cxx , animaExpTensors.cxx , animaLogTensors.cxx , animaNoiseGenerator.cxx , animaNyulStandardization.cxx , animaImageSmoother.cxx , animaAverageImages.cxx , animaDenseTransformArithmetic.cxx , animaImageArithmetic.cxx , animaLinearTransformArithmetic.cxx , animaLinearTransformToSVF.cxx , animaCollapseImage.cxx , animaConcatenateImages.cxx , animaConvertImage.cxx , animaConvertShape.cxx , animaSimuBlochSE.cxx , animaCreateImage.cxx , animaMergeBlockImages.cxx , animaVectorizeImages.cxx , animaQRTest.cxx , animaBVLSOptimizerTest.cxx , animaNNLSOptimizerTest.cxx , animaGaussLaguerreTest.cxx , animaSphereAverageTest.cxx , animaFDRCorrectPValues.cxx , animaLowMemNLMeansPatientToGroupComparison.cxx , animaLowMemPatientToGroupComparison.cxx , animaLowMemPatientToGroupODFComparison.cxx , animaNLMeansPatientToGroupComparison.cxx , animaDetectedComponents.cxx , animaMorphologicalOperations.cxx , animaBuildSamplesFromVolumes.cxx , animaLocalPatchCovarianceDistance.cxx , animaLocalPatchMeanDistance.cxx , animaLowMemLocalPatchCovarianceDistance.cxx , animaLowMemLocalPatchMeanDistance.cxx , animaGammaMixtureT2RelaxometryEstimation.cxx , animaGMMT2RelaxometryEstimation.cxx , animaMultiT2RelaxometryEstimation.cxx , animaT1RelaxometryEstimation.cxx , animaT1SERelaxometryEstimation.cxx , animaT2EPGRelaxometryEstimation.cxx , animaT2RelaxometryEstimation.cxx , animaSimuBlochCoherentGRE.cxx , animaSimuBlochGRE.cxx , animaSimuBlochIR-GRE.cxx , animaSimuBlochIR-SE.cxx , animaNLMeans.cxx , animaGeneralizedFA.cxx , animaStimulatedSpinEchoSimulator.cxx , animaBMDistortionCorrection.cxx , animaDenseSVFBMRegistration.cxx , animaDistortionCorrection.cxx , animaEddyCurrentCorrection.cxx , animaPyramidalBMRegistration.cxx , animaDenseMCMSVFBMRegistration.cxx , animaDenseTensorSVFBMRegistration.cxx , animaApplyDistortionCorrection.cxx , animaApplyTransformSerie.cxx , animaFibersApplyTransformSerie.cxx , animaMCMApplyTransformSerie.cxx , animaPyramidImage.cxx , animaPatientToGroupODFComparison.cxx , animaTensorApplyTransformSerie.cxx , animaMCMMeasureTest.cxx , animaSymmetryConstrainedRegistration.cxx , animaSymmetryPlane.cxx , animaImageMosaicing.cxx , animaImageResolutionChanger.cxx , animaDisplacementFieldJacobian.cxx , animaTransformSerieXmlGenerator.cxx , animaConnectedComponents.cxx , animaDistanceMap.cxx , animaFillHoleImage.cxx , animaInfluenceZones.cxx , animaKMeansClustering.cxx , animaMajorityLabelVoting.cxx , animaPatientToGroupComparison.cxx , animaODFApplyTransformSerie.cxx , animaOtsuThrImage.cxx , animaThrImage.cxx , animaTotalLesionLoad.cxx , animaGcStremMsLesionsSegmentation.cxx , animaGraphCut.cxx , animaRemoveTouchingBorder.cxx , animaMaskImage.cxx , animaIsosurface.cxx , animaDiceMeasure.cxx , animaFuzzyDiceMeasure.cxx , animaLesionEvolutionDetection.cxx , animaDWISimulatorFromDTI.cxx
• mask3DImage() : animaMaskImage.cxx
• maskScalar4DImage() : animaMaskImage.cxx

- p -

• performSmoothing() : animaImageSmoother.cxx

- r -

• retrieveComponentType() : animaConcatenateImages.cxx
• retrieveDimension() : animaConnectedComponents.cxx
• retrieveNbComponent() : animaConcatenateImages.cxx
• retrieveNbDimensions() : animaFlipTensors.cxx , animaNoiseGenerator.cxx , animaNyulStandardization.cxx , animaCollapseImage.cxx , animaConcatenateImages.cxx , animaConvertImage.cxx , animaCropImage.cxx , animaVectorizeImages.cxx , animaApplyTransformSerie.cxx , animaMaskImage.cxx

- s -

• standardize() : animaNyulStandardization.cxx

- t -

• ThreadFilterer() : animaFibersFilterer.cxx

- v -

• vectorize() : animaVectorizeImages.cxx