anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension > Class Template Reference

Tensor correlation similarity measure as defined by Taquet et al. More...

#include <animaTensorCorrelationImageToImageMetric.h>

Inheritance diagram for anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >:

Collaboration diagram for anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >:

Public Types
typedef itk::SmartPointer< const Self >	ConstPointer
typedef itk::ContinuousIndex< double, ImageDimension >	ContinuousIndexType
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef TFixedImage::PixelType	PixelType
typedef itk::SmartPointer< Self >	Pointer
typedef TensorCorrelationImageToImageMetric	Self
typedef BaseOrientedModelImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef itk::VectorImage< TFixedImagePixelType, ImageDimension >	TFixedImage
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension >	TMovingImage
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef FixedImageType::ConstPointer	FixedImageConstPointer
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef itk::SpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType
typedef FixedImageType::RegionType	FixedImageRegionType
typedef itk::VectorImage< TFixedImagePixelType, ImageDimension >	FixedImageType
typedef TransformType::InputPointType	InputPointType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef itk::InterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	InterpolatorType
typedef Superclass::MeasureType	MeasureType
enum	ModelReorientationType
typedef MovingImageType::ConstPointer	MovingImageConstPointer
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef itk::SpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension > ::PixelType	MovingImagePixelType
typedef itk::VectorImage< TMovingImagePixelType, ImageDimension >	MovingImageType
typedef TransformType::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef double	RealType
typedef BaseOrientedModelImageToImageMetric	Self
typedef itk::SingleValuedCostFunction	Superclass
typedef TransformType::JacobianType	TransformJacobianType
typedef TransformType::ParametersType	TransformParametersType
typedef TransformType::Pointer	TransformPointer
typedef itk::Transform< CoordinateRepresentationType, itkGetStaticConstMacro(MovingImageDimension), itkGetStaticConstMacro(FixedImageDimension)>	TransformType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
MeasureType	GetValue (const TransformParametersType &parameters) const ITK_OVERRIDE
void	PreComputeFixedValues ()
Public Member Functions inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const ITK_OVERRIDE
	Should not be used. More...
virtual const FixedImageType *	GetFixedImage () const
virtual const FixedImageMaskType *	GetFixedImageMask () const
virtual const FixedImageRegionType &	GetFixedImageRegion () const
virtual const InterpolatorType *	GetInterpolator () const
virtual ModelReorientationType	GetModelRotation () const
virtual const MovingImageType *	GetMovingImage () const
virtual const MovingImageMaskType *	GetMovingImageMask () const
unsigned int	GetNumberOfParameters (void) const ITK_OVERRIDE
virtual const unsigned long &	GetNumberOfPixelsCounted () const
virtual const TransformType *	GetTransform () const
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const ITK_OVERRIDE
virtual void	Initialize ()
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual void	SetFixedImageMask (FixedImageMaskType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedImageRegion (FixedImageRegionType _arg)
virtual void	SetInterpolator (InterpolatorType *_arg)
virtual void	SetModelRotation (ModelReorientationType _arg)
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual void	SetMovingImageMask (MovingImageMaskType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	TensorCorrelationImageToImageMetric ()
virtual	~TensorCorrelationImageToImageMetric ()
Protected Member Functions inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
	BaseOrientedModelImageToImageMetric ()
void	PrintSelf (std::ostream &os, itk::Indent indent) const ITK_OVERRIDE
virtual	~BaseOrientedModelImageToImageMetric ()

Additional Inherited Members
Static Public Attributes inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
static const unsigned int	FixedImageDimension
static const unsigned int	MovingImageDimension
Protected Attributes inherited from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >
FixedImageConstPointer	m_FixedImage
FixedImageMaskConstPointer	m_FixedImageMask
InterpolatorPointer	m_Interpolator
MovingImageConstPointer	m_MovingImage
MovingImageMaskConstPointer	m_MovingImageMask
unsigned long	m_NumberOfPixelsCounted
vnl_matrix< double >	m_OrientationMatrix
TransformPointer	m_Transform

Detailed Description

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>
class anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >

Tensor correlation similarity measure as defined by Taquet et al.

M. Taquet et al. "A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure". IEEE TMI 2014.

Definition at line 18 of file animaTensorCorrelationImageToImageMetric.h.

Member Typedef Documentation

ConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::SmartPointer<const Self> anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::ConstPointer

Definition at line 30 of file animaTensorCorrelationImageToImageMetric.h.

ContinuousIndexType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::ContinuousIndex<double, ImageDimension> anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::ContinuousIndexType

Definition at line 46 of file animaTensorCorrelationImageToImageMetric.h.

CoordinateRepresentationType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::CoordinateRepresentationType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::CoordinateRepresentationType

Definition at line 48 of file animaTensorCorrelationImageToImageMetric.h.

FixedImageConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::FixedImageConstPointer anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::FixedImageConstPointer

Definition at line 53 of file animaTensorCorrelationImageToImageMetric.h.

FixedImageType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::FixedImageType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::FixedImageType

Definition at line 51 of file animaTensorCorrelationImageToImageMetric.h.

InputPointType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::InputPointType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::InputPointType

Definition at line 45 of file animaTensorCorrelationImageToImageMetric.h.

MeasureType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MeasureType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MeasureType

Definition at line 50 of file animaTensorCorrelationImageToImageMetric.h.

MovingImageConstPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MovingImageConstPointer anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MovingImageConstPointer

Definition at line 54 of file animaTensorCorrelationImageToImageMetric.h.

MovingImageType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::MovingImageType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MovingImageType

Definition at line 52 of file animaTensorCorrelationImageToImageMetric.h.

OutputPointType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::OutputPointType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::OutputPointType

Definition at line 44 of file animaTensorCorrelationImageToImageMetric.h.

PixelType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef TFixedImage::PixelType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PixelType

Types transferred from the base class

Definition at line 39 of file animaTensorCorrelationImageToImageMetric.h.

Pointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::SmartPointer<Self> anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Pointer

Definition at line 29 of file animaTensorCorrelationImageToImageMetric.h.

Self

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef TensorCorrelationImageToImageMetric anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Self

Definition at line 27 of file animaTensorCorrelationImageToImageMetric.h.

Superclass

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef BaseOrientedModelImageToImageMetric<TFixedImage, TMovingImage > anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::Superclass

Definition at line 28 of file animaTensorCorrelationImageToImageMetric.h.

TFixedImage

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::VectorImage<TFixedImagePixelType, ImageDimension> anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TFixedImage

Standard class typedefs.

Definition at line 24 of file animaTensorCorrelationImageToImageMetric.h.

TMovingImage

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef itk::VectorImage<TMovingImagePixelType, ImageDimension> anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TMovingImage

Definition at line 25 of file animaTensorCorrelationImageToImageMetric.h.

TransformParametersType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformParametersType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformParametersType

Definition at line 43 of file animaTensorCorrelationImageToImageMetric.h.

TransformPointer

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformPointer anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformPointer

Definition at line 42 of file animaTensorCorrelationImageToImageMetric.h.

TransformType

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

typedef Superclass::TransformType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TransformType

Definition at line 41 of file animaTensorCorrelationImageToImageMetric.h.

Constructor & Destructor Documentation

TensorCorrelationImageToImageMetric()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorCorrelationImageToImageMetric ( )

protected

Constructor

Definition at line 16 of file animaTensorCorrelationImageToImageMetric.hxx.

References anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue().

Referenced by anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::~TensorCorrelationImageToImageMetric().

~TensorCorrelationImageToImageMetric()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::~TensorCorrelationImageToImageMetric ( )

inlineprotectedvirtual

Definition at line 63 of file animaTensorCorrelationImageToImageMetric.h.

References anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorCorrelationImageToImageMetric().

Member Function Documentation

CreateAnother()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual::itk::LightObject::Pointer anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::CreateAnother

(

void

)

const

GetNameOfClass()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

virtual const char* anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from anima::BaseOrientedModelImageToImageMetric< itk::VectorImage< TFixedImagePixelType, ImageDimension >, itk::VectorImage< TMovingImagePixelType, ImageDimension > >.

GetValue()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::MeasureType anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue

(

const TransformParametersType &

parameters

)

const

Get the value for single valued optimizers.

Get the match Measure

Definition at line 33 of file animaTensorCorrelationImageToImageMetric.hxx.

References anima::ExtractPPDRotationFromJacobianMatrix(), anima::GetTensorFromVectorRepresentation(), anima::GetVectorRepresentation(), anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PreComputeFixedValues(), and anima::RotateSymmetricMatrix().

Referenced by anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::TensorCorrelationImageToImageMetric().

New()

template<class TFixedImagePixelType, class TMovingImagePixelType, unsigned int ImageDimension>

static Pointer anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::New ( )

static

Method for creation through the object factory.

PreComputeFixedValues()

template<class TFixedImagePixelType , class TMovingImagePixelType , unsigned int ImageDimension>

void anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::PreComputeFixedValues

(

)

Definition at line 136 of file animaTensorCorrelationImageToImageMetric.hxx.

Referenced by anima::TensorCorrelationImageToImageMetric< TFixedImagePixelType, TMovingImagePixelType, ImageDimension >::GetValue().

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The documentation for this class was generated from the following files:

• animaTensorCorrelationImageToImageMetric.h
• animaTensorCorrelationImageToImageMetric.hxx