anima::MCMBlockMatchingInitializer< PixelType, NDimensions > Class Template Reference

#include <animaMCMBlockMatchInitializer.h>

Inheritance diagram for anima::MCMBlockMatchingInitializer< PixelType, NDimensions >:

Collaboration diagram for anima::MCMBlockMatchingInitializer< PixelType, NDimensions >:

Classes
struct	MCMBlockGeneratorThreadStruct

Public Types
typedef Superclass::BlockGeneratorThreadStruct	BlockGeneratorThreadStruct
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::ImageRegionType	ImageRegionType
typedef anima::MCMImage< PixelType, NDimensions >	MCMImageType
typedef MCModelType::Pointer	MCModelPointer
typedef anima::MultiCompartmentModel	MCModelType
typedef itk::SmartPointer< Self >	Pointer
typedef MCMBlockMatchingInitializer< PixelType, NDimensions >	Self
typedef anima::BlockMatchingInitializer< PixelType, NDimensions >	Superclass
Public Types inherited from anima::BlockMatchingInitializer< PixelType, NDimensions >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef ScalarImageType::RegionType	ImageRegionType
typedef ScalarImageType::IndexType	IndexType
typedef MaskImageType::Pointer	MaskImagePointer
typedef itk::Image< unsigned char, NDimensions >	MaskImageType
typedef itk::SmartPointer< Self >	Pointer
typedef ScalarImageType::PointType	PointType
typedef ScalarImageType::Pointer	ScalarImagePointer
typedef itk::Image< PixelType, NDimensions >	ScalarImageType
typedef BlockMatchingInitializer< PixelType, NDimensions >	Self
typedef itk::Object	Superclass
typedef VectorImageType::Pointer	VectorImagePointer
typedef itk::VectorImage< PixelType, NDimensions >	VectorImageType
typedef WeightImageType::Pointer	WeightImagePointer
typedef itk::Image< double, NDimensions >	WeightImageType

Public Member Functions
void	AddReferenceImage (itk::ImageBase< NDimensions > *refImage) ITK_OVERRIDE
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
Public Member Functions inherited from anima::BlockMatchingInitializer< PixelType, NDimensions >
void	AddGenerationMask (MaskImageType *mask)
void	clearGenerationMasks ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual unsigned int	GetBlockSize ()
virtual unsigned int	GetBlockSpacing ()
itk::ImageBase< NDimensions > *	GetFirstReferenceImage ()
std::vector< unsigned int > &	GetMaskStartingIndexes ()
virtual unsigned int	GetNumberOfThreads ()
virtual double	GetOrientedModelVarianceThreshold ()
std::vector< ImageRegionType > &	GetOutput ()
std::vector< PointType > &	GetOutputPositions ()
virtual double	GetPercentageKept ()
ScalarImageType *	GetReferenceScalarImage (unsigned int i)
VectorImageType *	GetReferenceVectorImage (unsigned int i)
virtual ImageRegionType	GetRequestedRegion ()
virtual double	GetScalarVarianceThreshold ()
void	RegionBlockGenerator (BlockGeneratorThreadStruct *workStr, unsigned int threadId)
void	SetBlockSize (unsigned int val)
void	SetBlockSpacing (unsigned int val)
virtual void	SetNumberOfThreads (unsigned int _arg)
void	SetOrientedModelVarianceThreshold (double val)
void	SetPercentageKept (double val)
void	SetRequestedRegion (const ImageRegionType &val)
void	SetScalarVarianceThreshold (double val)
void	Update ()

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from anima::BlockMatchingInitializer< PixelType, NDimensions >
static Pointer	New ()
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreadBlockGenerator (void *arg)

Protected Member Functions
bool	CheckOrientedModelVariance (unsigned int imageIndex, ImageRegionType &region, double &blockVariance, BlockGeneratorThreadStruct *workStr, unsigned int threadId) ITK_OVERRIDE
void	InitializeThreading (unsigned int maskIndex, BlockGeneratorThreadStruct *&workStr) ITK_OVERRIDE
	MCMBlockMatchingInitializer ()
virtual	~MCMBlockMatchingInitializer ()
Protected Member Functions inherited from anima::BlockMatchingInitializer< PixelType, NDimensions >
	BlockMatchingInitializer ()
bool	CheckBlockConditions (ImageRegionType &region, double &blockVariance, BlockGeneratorThreadStruct *workStr, unsigned int threadId)
bool	CheckScalarVariance (ScalarImageType *refImage, ImageRegionType &region, double &blockVariance)
void	ComputeBlocksOnGenerationMask (unsigned int maskIndex)
bool	ProgressCounter (std::vector< unsigned int > &counter, std::vector< unsigned int > &bounds)
virtual	~BlockMatchingInitializer ()

Detailed Description

template<class PixelType, unsigned int NDimensions = 3>
class anima::MCMBlockMatchingInitializer< PixelType, NDimensions >

Definition at line 11 of file animaMCMBlockMatchInitializer.h.

Member Typedef Documentation

BlockGeneratorThreadStruct

template<class PixelType , unsigned int NDimensions = 3>

typedef Superclass::BlockGeneratorThreadStruct anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::BlockGeneratorThreadStruct

Definition at line 31 of file animaMCMBlockMatchInitializer.h.

ConstPointer

template<class PixelType , unsigned int NDimensions = 3>

typedef itk::SmartPointer<const Self> anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::ConstPointer

Definition at line 18 of file animaMCMBlockMatchInitializer.h.

ImageRegionType

template<class PixelType , unsigned int NDimensions = 3>

typedef Superclass::ImageRegionType anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::ImageRegionType

Definition at line 32 of file animaMCMBlockMatchInitializer.h.

MCMImageType

template<class PixelType , unsigned int NDimensions = 3>

typedef anima::MCMImage<PixelType, NDimensions> anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCMImageType

Definition at line 20 of file animaMCMBlockMatchInitializer.h.

MCModelPointer

template<class PixelType , unsigned int NDimensions = 3>

typedef MCModelType::Pointer anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCModelPointer

Definition at line 29 of file animaMCMBlockMatchInitializer.h.

MCModelType

template<class PixelType , unsigned int NDimensions = 3>

typedef anima::MultiCompartmentModel anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCModelType

Definition at line 28 of file animaMCMBlockMatchInitializer.h.

Pointer

template<class PixelType , unsigned int NDimensions = 3>

typedef itk::SmartPointer<Self> anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::Pointer

Definition at line 17 of file animaMCMBlockMatchInitializer.h.

Self

template<class PixelType , unsigned int NDimensions = 3>

typedef MCMBlockMatchingInitializer<PixelType,NDimensions> anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::Self

Definition at line 16 of file animaMCMBlockMatchInitializer.h.

Superclass

template<class PixelType , unsigned int NDimensions = 3>

typedef anima::BlockMatchingInitializer<PixelType, NDimensions> anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::Superclass

Definition at line 15 of file animaMCMBlockMatchInitializer.h.

Constructor & Destructor Documentation

MCMBlockMatchingInitializer()

template<class PixelType , unsigned int NDimensions = 3>

anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCMBlockMatchingInitializer ( )

inlineprotected

Definition at line 42 of file animaMCMBlockMatchInitializer.h.

Referenced by anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::~MCMBlockMatchingInitializer().

~MCMBlockMatchingInitializer()

template<class PixelType , unsigned int NDimensions = 3>

virtual anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::~MCMBlockMatchingInitializer ( )

inlineprotectedvirtual

Definition at line 46 of file animaMCMBlockMatchInitializer.h.

References anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::CheckOrientedModelVariance(), anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::InitializeThreading(), and anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCMBlockMatchingInitializer().

Member Function Documentation

AddReferenceImage()

template<class PixelType , unsigned int NDimensions>

void anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::AddReferenceImage ( itk::ImageBase< NDimensions > *  refImage )

virtual

Reimplemented from anima::BlockMatchingInitializer< PixelType, NDimensions >.

Definition at line 18 of file animaMCMBlockMatchInitializer.hxx.

References anima::MCMImage< TPixel, VImageDimension >::GetDescriptionModel(), and anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::InitializeThreading().

CheckOrientedModelVariance()

template<class PixelType , unsigned int NDimensions>

bool anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::CheckOrientedModelVariance ( unsigned int  imageIndex, ImageRegionType &  region, double &  blockVariance, BlockGeneratorThreadStruct *  workStr, unsigned int  threadId  )

protectedvirtual

Reimplemented from anima::BlockMatchingInitializer< PixelType, NDimensions >.

Definition at line 49 of file animaMCMBlockMatchInitializer.hxx.

Referenced by anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::InitializeThreading(), and anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::~MCMBlockMatchingInitializer().

CreateAnother()

template<class PixelType , unsigned int NDimensions = 3>

virtual::itk::LightObject::Pointer anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::CreateAnother

(

void

)

const

GetNameOfClass()

template<class PixelType , unsigned int NDimensions = 3>

virtual const char* anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from anima::BlockMatchingInitializer< PixelType, NDimensions >.

InitializeThreading()

template<class PixelType , unsigned int NDimensions>

void anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::InitializeThreading ( unsigned int  maskIndex, BlockGeneratorThreadStruct *&  workStr  )

protectedvirtual

Reimplemented from anima::BlockMatchingInitializer< PixelType, NDimensions >.

Definition at line 30 of file animaMCMBlockMatchInitializer.hxx.

References anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::CheckOrientedModelVariance(), and anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::MCMBlockGeneratorThreadStruct::ref_models.

Referenced by anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::AddReferenceImage(), and anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::~MCMBlockMatchingInitializer().

New()

template<class PixelType , unsigned int NDimensions = 3>

static Pointer anima::MCMBlockMatchingInitializer< PixelType, NDimensions >::New ( )

static

Method for creation through the object factory.

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The documentation for this class was generated from the following files:

• animaMCMBlockMatchInitializer.h
• animaMCMBlockMatchInitializer.hxx