anima::DTIScalarMapsImageFilter< ImageDimension > Class Template Reference

Applies an variance filter to an image. More...

#include <animaDTIScalarMapsImageFilter.h>

Inheritance diagram for anima::DTIScalarMapsImageFilter< ImageDimension >:

Collaboration diagram for anima::DTIScalarMapsImageFilter< ImageDimension >:

Public Types
typedef OutputImageType	ADCImageType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef OutputImageType	FAImageType
typedef itk::VectorImage< double, ImageDimension >	InputImageType
typedef OutputImageType::RegionType	OutputImageRegionType
typedef itk::Image< double, ImageDimension >	OutputImageType
typedef itk::SmartPointer< Self >	Pointer
typedef DTIScalarMapsImageFilter	Self
typedef anima::NumberedThreadImageToImageFilter< InputImageType, OutputImageType >	Superclass
typedef TensorImageType::RegionType	TensorImageRegionType
typedef TensorImageType::SizeType	TensorImageSizeType
typedef InputImageType	TensorImageType
typedef TensorImageType::PixelType	TensorVectorType
Public Types inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef itk::SmartPointer< Self >	Pointer
typedef NumberedThreadImageToImageFilter	Self
typedef itk::ImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >	Superclass
typedef itk::ImageSource< itk::Image< double, ImageDimension > >::ThreadStruct	ThreadStruct

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
OutputImageType::Pointer	GetADCImage ()
OutputImageType::Pointer	GetAxialDiffusivityImage ()
OutputImageType::Pointer	GetFAImage ()
virtual const char *	GetNameOfClass () const
OutputImageType::Pointer	GetRadialDiffusivityImage ()
itk::DataObject::Pointer	MakeOutput (itk::ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE
Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual OutputImageRegionType	GetComputationRegion ()
virtual void	SetComputationRegion (OutputImageRegionType _arg)
virtual void	SetNumberOfPointsToProcess (unsigned int _arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
static Pointer	New ()

Static Public Attributes
static const unsigned int	InputImageDimension = InputImageType::ImageDimension
static const unsigned int	OutputImageDimension = OutputImageType::ImageDimension
Static Public Attributes inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
	DTIScalarMapsImageFilter ()
void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE
virtual	~DTIScalarMapsImageFilter ()
Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
virtual void	BeforeThreadedGenerateData () ITK_OVERRIDE
virtual void	GenerateData () ITK_OVERRIDE
unsigned int	GetSafeThreadId ()
void	IncrementNumberOfProcessedPoints ()
void	InitializeZeroPixel (itk::Image< double, ImageDimension > *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel)
	Utility function to initialize output images pixel to zero for vector images. More...
void	InitializeZeroPixel (itk::Image< double, ImageDimension > *, PixelType &zeroPixel)
	Utility function to initialize output images pixel to zero for all images except vector images. More...
	NumberedThreadImageToImageFilter ()
void	SafeReleaseThreadId (unsigned int threadId)
virtual void	ThreadProcessSlices ()
virtual	~NumberedThreadImageToImageFilter ()

Additional Inherited Members
Static Protected Member Functions inherited from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderMultiSplitCallback (void *arg)

Detailed Description

template<unsigned int ImageDimension = 3>
class anima::DTIScalarMapsImageFilter< ImageDimension >

Applies an variance filter to an image.

Computes tow image where a given pixel is the FA or ADC value of the tensor of the corresponding input pixel.

Definition at line 23 of file animaDTIScalarMapsImageFilter.h.

Member Typedef Documentation

ADCImageType

template<unsigned int ImageDimension = 3>

typedef OutputImageType anima::DTIScalarMapsImageFilter< ImageDimension >::ADCImageType

Definition at line 33 of file animaDTIScalarMapsImageFilter.h.

ConstPointer

template<unsigned int ImageDimension = 3>

typedef itk::SmartPointer<const Self> anima::DTIScalarMapsImageFilter< ImageDimension >::ConstPointer

Definition at line 46 of file animaDTIScalarMapsImageFilter.h.

FAImageType

template<unsigned int ImageDimension = 3>

typedef OutputImageType anima::DTIScalarMapsImageFilter< ImageDimension >::FAImageType

Definition at line 32 of file animaDTIScalarMapsImageFilter.h.

InputImageType

template<unsigned int ImageDimension = 3>

typedef itk::VectorImage<double, ImageDimension> anima::DTIScalarMapsImageFilter< ImageDimension >::InputImageType

Convenient typedefs for simplifying declarations.

Definition at line 29 of file animaDTIScalarMapsImageFilter.h.

OutputImageRegionType

template<unsigned int ImageDimension = 3>

typedef OutputImageType::RegionType anima::DTIScalarMapsImageFilter< ImageDimension >::OutputImageRegionType

Definition at line 58 of file animaDTIScalarMapsImageFilter.h.

OutputImageType

template<unsigned int ImageDimension = 3>

typedef itk::Image<double, ImageDimension> anima::DTIScalarMapsImageFilter< ImageDimension >::OutputImageType

Definition at line 30 of file animaDTIScalarMapsImageFilter.h.

Pointer

template<unsigned int ImageDimension = 3>

typedef itk::SmartPointer<Self> anima::DTIScalarMapsImageFilter< ImageDimension >::Pointer

Definition at line 45 of file animaDTIScalarMapsImageFilter.h.

Self

template<unsigned int ImageDimension = 3>

typedef DTIScalarMapsImageFilter anima::DTIScalarMapsImageFilter< ImageDimension >::Self

Standard class typedefs.

Definition at line 43 of file animaDTIScalarMapsImageFilter.h.

Superclass

template<unsigned int ImageDimension = 3>

typedef anima::NumberedThreadImageToImageFilter<InputImageType, OutputImageType> anima::DTIScalarMapsImageFilter< ImageDimension >::Superclass

Definition at line 44 of file animaDTIScalarMapsImageFilter.h.

TensorImageRegionType

template<unsigned int ImageDimension = 3>

typedef TensorImageType::RegionType anima::DTIScalarMapsImageFilter< ImageDimension >::TensorImageRegionType

Definition at line 57 of file animaDTIScalarMapsImageFilter.h.

TensorImageSizeType

template<unsigned int ImageDimension = 3>

typedef TensorImageType::SizeType anima::DTIScalarMapsImageFilter< ImageDimension >::TensorImageSizeType

Definition at line 59 of file animaDTIScalarMapsImageFilter.h.

TensorImageType

template<unsigned int ImageDimension = 3>

typedef InputImageType anima::DTIScalarMapsImageFilter< ImageDimension >::TensorImageType

Definition at line 31 of file animaDTIScalarMapsImageFilter.h.

TensorVectorType

template<unsigned int ImageDimension = 3>

typedef TensorImageType::PixelType anima::DTIScalarMapsImageFilter< ImageDimension >::TensorVectorType

Image typedef support.

Definition at line 55 of file animaDTIScalarMapsImageFilter.h.

Constructor & Destructor Documentation

DTIScalarMapsImageFilter()

template<unsigned int ImageDimension>

anima::DTIScalarMapsImageFilter< ImageDimension >::DTIScalarMapsImageFilter ( )

protected

Definition at line 21 of file animaDTIScalarMapsImageFilter.hxx.

Referenced by anima::DTIScalarMapsImageFilter< ImageDimension >::GetRadialDiffusivityImage().

~DTIScalarMapsImageFilter()

template<unsigned int ImageDimension = 3>

virtual anima::DTIScalarMapsImageFilter< ImageDimension >::~DTIScalarMapsImageFilter ( )

inlineprotectedvirtual

Definition at line 71 of file animaDTIScalarMapsImageFilter.h.

References anima::DTIScalarMapsImageFilter< ImageDimension >::DynamicThreadedGenerateData().

Member Function Documentation

CreateAnother()

template<unsigned int ImageDimension = 3>

virtual::itk::LightObject::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::CreateAnother

(

void

)

const

DynamicThreadedGenerateData()

template<unsigned int ImageDimension>

void anima::DTIScalarMapsImageFilter< ImageDimension >::DynamicThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread )

protected

Definition at line 44 of file animaDTIScalarMapsImageFilter.hxx.

References anima::GetTensorFromVectorRepresentation().

Referenced by anima::DTIScalarMapsImageFilter< ImageDimension >::MakeOutput(), and anima::DTIScalarMapsImageFilter< ImageDimension >::~DTIScalarMapsImageFilter().

GetADCImage()

template<unsigned int ImageDimension = 3>

OutputImageType::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::GetADCImage ( )

inline

Definition at line 64 of file animaDTIScalarMapsImageFilter.h.

GetAxialDiffusivityImage()

template<unsigned int ImageDimension = 3>

OutputImageType::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::GetAxialDiffusivityImage ( )

inline

Definition at line 66 of file animaDTIScalarMapsImageFilter.h.

GetFAImage()

template<unsigned int ImageDimension = 3>

OutputImageType::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::GetFAImage ( )

inline

Definition at line 65 of file animaDTIScalarMapsImageFilter.h.

GetNameOfClass()

template<unsigned int ImageDimension = 3>

virtual const char* anima::DTIScalarMapsImageFilter< ImageDimension >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from anima::NumberedThreadImageToImageFilter< itk::VectorImage< double, ImageDimension >, itk::Image< double, ImageDimension > >.

GetRadialDiffusivityImage()

template<unsigned int ImageDimension = 3>

OutputImageType::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::GetRadialDiffusivityImage ( )

inline

Definition at line 67 of file animaDTIScalarMapsImageFilter.h.

References anima::DTIScalarMapsImageFilter< ImageDimension >::DTIScalarMapsImageFilter().

MakeOutput()

template<unsigned int ImageDimension>

itk::DataObject::Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::MakeOutput

(

itk::ProcessObject::DataObjectPointerArraySizeType

idx

)

Create the Output

Make Ouput

Definition at line 36 of file animaDTIScalarMapsImageFilter.hxx.

References anima::DTIScalarMapsImageFilter< ImageDimension >::DynamicThreadedGenerateData().

New()

template<unsigned int ImageDimension = 3>

static Pointer anima::DTIScalarMapsImageFilter< ImageDimension >::New ( )

static

Method for creation through the object factory.

Member Data Documentation

InputImageDimension

template<unsigned int ImageDimension = 3>

const unsigned int anima::DTIScalarMapsImageFilter< ImageDimension >::InputImageDimension = InputImageType::ImageDimension

static

Extract dimension from input and output image.

Definition at line 37 of file animaDTIScalarMapsImageFilter.h.

OutputImageDimension

template<unsigned int ImageDimension = 3>

const unsigned int anima::DTIScalarMapsImageFilter< ImageDimension >::OutputImageDimension = OutputImageType::ImageDimension

static

Definition at line 39 of file animaDTIScalarMapsImageFilter.h.

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The documentation for this class was generated from the following files:

• animaDTIScalarMapsImageFilter.h
• animaDTIScalarMapsImageFilter.hxx