ANIMA  4.0
anima::ODFProbabilisticTractographyImageFilter Member List

This is the complete list of members for anima::ODFProbabilisticTractographyImageFilter, including all inherited members.

Back enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
BaseProbabilisticTractographyImageFilter()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
Bottom enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Center enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
CheckModelProperties(double estimatedB0Value, double estimatedNoiseValue, VectorType &modelValue, unsigned int threadId) ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::CheckModelProperties(double estimatedB0Value, double estimatedNoiseValue, VectorType &modelValue, unsigned int threadId)=0anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedpure virtual
Colinear enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ColinearityDirectionType enum nameanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ComputeAdditionalScalarMaps()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inlineprotectedvirtual
ComputeFiber(FiberType &fiber, InterpolatorPointer &modelInterpolator, unsigned int numThread, ListType &resultWeights)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
ComputeLogWeightUpdate(double b0Value, double noiseValue, Vector3DType &newDirection, VectorType &modelValue, double &log_prior, double &log_proposal, unsigned int threadId) ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ComputeLogWeightUpdate(double b0Value, double noiseValue, Vector3DType &newDirection, VectorType &modelValue, double &log_prior, double &log_proposal, unsigned int threadId)=0anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedpure virtual
ComputeModelValue(InterpolatorPointer &modelInterpolator, ContinuousIndexType &index, VectorType &modelValue) ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ComputeModelValue(InterpolatorPointer &modelInterpolator, ContinuousIndexType &index, VectorType &modelValue)=0anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedpure virtual
ConstPointer typedefanima::ODFProbabilisticTractographyImageFilter
ContinuousIndexType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
CreateAnother(void) constanima::ODFProbabilisticTractographyImageFilter
createVTKOutput(FiberProcessVectorType &filteredFibers, ListType &filteredWeights)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
DirectionVectorType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
FiberProcessVectorType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
FiberType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
FilterOutputFibers(FiberProcessVectorType &fibers, ListType &weights)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
FindODFMaxima(const VectorType &modelValue, DirectionVectorType &maxima, double minVal, bool is2d)anima::ODFProbabilisticTractographyImageFilterprotected
Front enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
GetGeneralizedFractionalAnisotropy(VectorType &modelValue)anima::ODFProbabilisticTractographyImageFilterprotected
GetInitialDirectionMode()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
GetInputModelImage()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inline
GetKappaOfPriorDistribution()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
GetModelDimension()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
GetModelInterpolator()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
GetNameOfClass() constanima::ODFProbabilisticTractographyImageFiltervirtual
GetOutput()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inline
IndexType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
InitialDirectionModeType enum nameanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
InitializeFirstIterationFromModel(Vector3DType &colinearDir, VectorType &modelValue, unsigned int threadId) ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::InitializeFirstIterationFromModel(Vector3DType &colinearDir, VectorType &modelValue, unsigned int threadId)=0anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedpure virtual
InputModelImagePointer typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
InputModelImageType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
InterpolatorPointer typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
InterpolatorType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Left enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ListType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
MaskImagePointer typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
MaskImageType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Matrix3DType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
MembershipType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
MergeParticleClassFibers(FiberWorkType &fiberData, FiberProcessVectorType &outputMerged, unsigned int classNumber)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
New()anima::ODFProbabilisticTractographyImageFilterstatic
ODFProbabilisticTractographyImageFilter()anima::ODFProbabilisticTractographyImageFilterprotected
Outward enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Pointer typedefanima::ODFProbabilisticTractographyImageFilter
PointType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
PrepareTractography() ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
ProposeNewDirection(Vector3DType &oldDirection, VectorType &modelValue, Vector3DType &sampling_direction, double &log_prior, double &log_proposal, std::mt19937 &random_generator, unsigned int threadId) ITK_OVERRIDEanima::ODFProbabilisticTractographyImageFilterprotectedvirtual
BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ProposeNewDirection(Vector3DType &oldDirection, VectorType &modelValue, Vector3DType &sampling_direction, double &log_prior, double &log_proposal, std::mt19937 &random_generator, unsigned int threadId)=0anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedpure virtual
Right enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ScalarImagePointer typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ScalarImageType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ScalarInterpolatorPointer typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ScalarInterpolatorType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
ScalarType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Self typedefanima::ODFProbabilisticTractographyImageFilter
SetB0Image(ScalarImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetClusterDistance(unsigned int _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetComputeLocalColors(bool _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetCurvatureScale(double _arg)anima::ODFProbabilisticTractographyImageFiltervirtual
SetCutMask(MaskImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetFiberTrashThreshold(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetFilterMask(MaskImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetForbiddenMask(MaskImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetGFAThreshold(double _arg)anima::ODFProbabilisticTractographyImageFiltervirtual
SetInitialColinearityDirection(const ColinearityDirectionType &colDir)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inline
SetInitialDirectionMode(const InitialDirectionModeType &dir)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inline
SetInputModelImage(InputModelImageType *inImage)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >inlinevirtual
SetKappaOfPriorDistribution(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetKappaSplitThreshold(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetMAPMergeFibers(bool _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetMaxLengthFiber(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetMinimalDiffusionProbability(double _arg)anima::ODFProbabilisticTractographyImageFiltervirtual
SetMinimalNumberOfParticlesPerClass(unsigned int _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetMinLengthFiber(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetModelDimension(unsigned int _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetNoiseImage(ScalarImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetNumberOfFibersPerPixel(unsigned int _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetNumberOfParticles(unsigned int _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetODFSHOrder(unsigned int num)anima::ODFProbabilisticTractographyImageFilter
SetPositionDistanceFuseThreshold(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetResamplingThreshold(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetSeedMask(MaskImageType *_arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
SetStepProgression(double _arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >virtual
Superclass typedefanima::ODFProbabilisticTractographyImageFilter
ThreadedTrackComputer(unsigned int numThread, FiberProcessVectorType &resultFibers, ListType &resultWeights, unsigned int startSeedIndex, unsigned int endSeedIndex)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
ThreadTrack(unsigned int numThread, FiberProcessVectorType &resultFibers, ListType &resultWeights)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
ThreadTracker(void *arg)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedstatic
Top enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Update() ITK_OVERRIDEanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
UpdateClassesMemberships(FiberWorkType &fiberData, DirectionVectorType &directions, std::mt19937 &random_generator)anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protected
Vector3DType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
VectorType typedefanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
Weight enum valueanima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >
~BaseProbabilisticTractographyImageFilter()anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >protectedvirtual
~ODFProbabilisticTractographyImageFilter()anima::ODFProbabilisticTractographyImageFilterprotectedvirtual