| AddGradientDirection(unsigned int i, GradientType &grad) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| BaseCompartmentType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| BeforeThreadedGenerateData() ITK_OVERRIDE | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protectedvirtual |
| CheckComputationMask() ITK_OVERRIDE | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protectedvirtual |
| CompartmentType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| ComputeAICcValue(MCMPointer &mcmValue, double costValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ComputeExtraAxonalAndKappaCoarseGrids() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ComputeTensorRadialDiffsAndAzimuthCoarseGrids() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ConstPointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| CostFunctionBasePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| CostFunctionBaseType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| CreateAnother(void) const | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| CreateCostFunction(std::vector< double > &observedSignals, MCMPointer &mcmModel) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protectedvirtual |
| CreateOptimizer(CostFunctionBasePointer &cost, itk::Array< double > &lowerBounds, itk::Array< double > &upperBounds) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| DynamicThreadedGenerateData(const OutputImageRegionType &outputRegionForThread) ITK_OVERRIDE | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| EstimateFreeWaterModel(MCMPointer &mcmValue, std::vector< double > &observedSignals, itk::ThreadIdType threadId, double &aiccValue, double &b0Value, double &sigmaSqValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ExtraAxonalAndKappaCoarseGridInitialization(MCMPointer &mcmUpdateValue, CostFunctionBasePointer &cost, MCMType::ListType &workVec, ParametersType &p) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| Gaussian enum value | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| GenerateData() ITK_OVERRIDE | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protectedvirtual |
| GenerateOutputInformation() ITK_OVERRIDE | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| GetAICcVolume() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetB0Volume() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetBigDelta() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetComputationMask() | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | virtual |
| GetComputationRegion() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | virtual |
| GetCostValue(CostFunctionBasePointer &cost, ParametersType &p) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| GetGradientDirections() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetGradientStrengths() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetMCMCreator(unsigned int i) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetMLEstimationStrategy() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetMoseVolume() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetNameOfClass() const | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetNewMCMCreatorInstance() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetNoiseType() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetNumberOfCoils() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GetOptimizer() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetProfiledInformation(CostFunctionBasePointer &cost, MCMPointer &mcm, double &b0Value, double &sigmaSqValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| GetSafeThreadId() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protected |
| GetSigmaSquareVolume() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| GetSmallDelta() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| GradientType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| Image4DType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| IncrementNumberOfProcessedPoints() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protected |
| InitializeComputationRegionFromMask() | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protected |
| InitializeModelFromSimplifiedOne(MCMPointer &simplifiedModel, MCMPointer &complexModel) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protectedvirtual |
| InitializeZeroPixel(anima::MCMImage< OutputPixelType, 3 > *image, itk::VariableLengthVector< ScalarRealType > &zeroPixel) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotected |
| InitializeZeroPixel(anima::MCMImage< OutputPixelType, 3 > *, PixelType &zeroPixel) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotected |
| InitialOrientationsEstimation(MCMPointer &mcmValue, bool authorizedNegativeB0Value, unsigned int currentNumberOfCompartments, std::vector< double > &observedSignals, itk::ThreadIdType threadId, double &aiccValue, double &b0Value, double &sigmaSqValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| InputImagePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| InputImageRegionType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| InputImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| Marginal enum value | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MaskedImageToImageFilter() | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotected |
| MaskImagePointer typedef | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | |
| MaskImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MaskIndexType typedef | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | |
| MaskRegionType typedef | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | |
| MaskSizeType typedef | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | |
| MaximumLikelihoodEstimationMode enum name | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MCMCreatorType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MCMEstimatorImageFilter() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inlineprotected |
| MCMPointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MCMType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MCMVectorType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| ModelEstimation(MCMPointer &mcmValue, bool authorizedNegativeB0Value, std::vector< double > &observedSignals, itk::ThreadIdType threadId, double &aiccValue, double &b0Value, double &sigmaSqValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ModelImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MoseImagePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| MoseImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| NCC enum value | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| New() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | static |
| NumberedThreadImageToImageFilter() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotected |
| OptimizeNonIsotropicCompartments(MCMPointer &mcmValue, unsigned int currentNumberOfCompartments, std::vector< double > &observedSignals, itk::ThreadIdType threadId, double &aiccValue, double &b0Value, double &sigmaSqValue) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| OptimizerPointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OptimizerType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OutputImageDimension | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | static |
| OutputImagePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OutputImageRegionType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OutputImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OutputScalarImagePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| OutputScalarImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| ParametersType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| PerformSingleOptimization(ParametersType &p, CostFunctionBasePointer &cost, itk::Array< double > &lowerBounds, itk::Array< double > &upperBounds) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| Pointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| Profile enum value | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| SafeReleaseThreadId(unsigned int threadId) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protected |
| Self typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| SetAbsoluteCostChange(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetAxialDiffusivityValue(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetB0Threshold(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetBigDelta(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetCompartmentType(CompartmentType _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetComputationMask(MaskImagePointer _arg) | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | virtual |
| SetComputationRegion(OutputImageRegionType _arg) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | virtual |
| SetFindOptimalNumberOfCompartments(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetFTolerance(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetGradientStrengths(std::vector< double > &mb) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| SetIRWDiffusivityValue(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetMaxEval(unsigned int _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetMLEstimationStrategy(MaximumLikelihoodEstimationMode _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetModelWithFreeWaterComponent(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetModelWithRestrictedWaterComponent(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetModelWithStaniszComponent(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetModelWithStationaryWaterComponent(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetMoseVolume(MoseImageType *img) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| SetNoiseType(SignalNoiseType _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetNumberOfCoils(unsigned int _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetNumberOfCompartments(unsigned int _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetNumberOfPointsToProcess(unsigned int _arg) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | virtual |
| SetOptimizer(std::string &opt) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inline |
| SetRadialDiffusivity1Value(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetRadialDiffusivity2Value(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetSmallDelta(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetStaniszDiffusivityValue(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseCommonConcentrations(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseCommonDiffusivities(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseCommonExtraAxonalFractions(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedDiffusivity(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedExtraAxonalFraction(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedFreeWaterDiffusivity(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedIRWDiffusivity(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedOrientationConcentration(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedStaniszDiffusivity(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetUseConstrainedStaniszRadius(bool _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SetXTolerance(double _arg) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | virtual |
| SignalNoiseType enum name | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| SparseInitializeSticks(MCMPointer &complexModel, bool authorizeNegativeB0Value, std::vector< double > &observedSignals, itk::ThreadIdType threadId) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protectedvirtual |
| Superclass typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| TensorCoarseGridInitialization(MCMPointer &mcmUpdateValue, CostFunctionBasePointer &cost, MCMType::ListType &workVec, ParametersType &p) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | protected |
| ThreaderMultiSplitCallback(void *arg) | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protectedstatic |
| ThreadProcessSlices() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | protectedvirtual |
| ThreadStruct typedef | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | |
| TInputImage typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| TOutputImage typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| VariableLengthVectorType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| VariableProjection enum value | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| VectorImagePointer typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| VectorImageType typedef | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| WriteMCMOutput(std::string fileName) | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | |
| ~MaskedImageToImageFilter() | anima::MaskedImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotectedvirtual |
| ~MCMEstimatorImageFilter() | anima::MCMEstimatorImageFilter< InputPixelType, OutputPixelType > | inlineprotectedvirtual |
| ~NumberedThreadImageToImageFilter() | anima::NumberedThreadImageToImageFilter< itk::Image< InputPixelType, 3 >, anima::MCMImage< OutputPixelType, 3 > > | inlineprotectedvirtual |
