| Back enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| BaseProbabilisticTractographyImageFilter() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| Bottom enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Center enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| CheckModelProperties(double estimatedB0Value, double estimatedNoiseValue, VectorType &modelValue, unsigned int threadId) ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::CheckModelProperties(double estimatedB0Value, double estimatedNoiseValue, VectorType &modelValue, unsigned int threadId)=0 | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedpure virtual |
| Colinear enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ColinearityDirectionType enum name | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ComputeAdditionalScalarMaps() ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| ComputeFiber(FiberType &fiber, InterpolatorPointer &modelInterpolator, unsigned int numThread, ListType &resultWeights) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| ComputeLogWeightUpdate(double b0Value, double noiseValue, Vector3DType &newDirection, VectorType &modelValue, double &log_prior, double &log_proposal, unsigned int threadId) ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ComputeLogWeightUpdate(double b0Value, double noiseValue, Vector3DType &newDirection, VectorType &modelValue, double &log_prior, double &log_proposal, unsigned int threadId)=0 | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedpure virtual |
| ComputeModelValue(InterpolatorPointer &modelInterpolator, ContinuousIndexType &index, VectorType &modelValue) ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ComputeModelValue(InterpolatorPointer &modelInterpolator, ContinuousIndexType &index, VectorType &modelValue)=0 | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedpure virtual |
| ConstPointer typedef | anima::DTIProbabilisticTractographyImageFilter | |
| ContinuousIndexType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| CreateAnother(void) const | anima::DTIProbabilisticTractographyImageFilter | |
| createVTKOutput(FiberProcessVectorType &filteredFibers, ListType &filteredWeights) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| DirectionVectorType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| DTIProbabilisticTractographyImageFilter() | anima::DTIProbabilisticTractographyImageFilter | protected |
| FiberProcessVectorType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| FiberType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| FilterOutputFibers(FiberProcessVectorType &fibers, ListType &weights) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| Front enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| GetDTIMinorDirection(VectorType &modelValue, Vector3DType &resVec) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetDTIPrincipalDirection(const VectorType &modelValue, Vector3DType &resVec, bool is2d) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetEigenValueCombinations(VectorType &modelValue, double &meanLambda, double &perpLambda) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetFractionalAnisotropy(VectorType &modelValue) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetInitialDirectionMode() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| GetInputModelImage() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | inline |
| GetKappaFromFA(double FA) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetKappaOfPriorDistribution() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| GetLinearCoefficient(VectorType &modelValue) | anima::DTIProbabilisticTractographyImageFilter | protected |
| GetModelDimension() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| GetModelInterpolator() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| GetNameOfClass() const | anima::DTIProbabilisticTractographyImageFilter | virtual |
| GetOutput() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | inline |
| IndexType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| InitialDirectionModeType enum name | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| InitializeFirstIterationFromModel(Vector3DType &colinearDir, VectorType &modelValue, unsigned int threadId) ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::InitializeFirstIterationFromModel(Vector3DType &colinearDir, VectorType &modelValue, unsigned int threadId)=0 | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedpure virtual |
| InputModelImagePointer typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| InputModelImageType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| InterpolatorPointer typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| InterpolatorType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Left enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ListType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| MaskImagePointer typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| MaskImageType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Matrix3DType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| MembershipType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| MergeParticleClassFibers(FiberWorkType &fiberData, FiberProcessVectorType &outputMerged, unsigned int classNumber) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| New() | anima::DTIProbabilisticTractographyImageFilter | static |
| Outward enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Pointer typedef | anima::DTIProbabilisticTractographyImageFilter | |
| PointType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| PrepareTractography() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedvirtual |
| ProposeNewDirection(Vector3DType &oldDirection, VectorType &modelValue, Vector3DType &sampling_direction, double &log_prior, double &log_proposal, std::mt19937 &random_generator, unsigned int threadId) ITK_OVERRIDE | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
| BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > >::ProposeNewDirection(Vector3DType &oldDirection, VectorType &modelValue, Vector3DType &sampling_direction, double &log_prior, double &log_proposal, std::mt19937 &random_generator, unsigned int threadId)=0 | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedpure virtual |
| Right enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ScalarImagePointer typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ScalarImageType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ScalarInterpolatorPointer typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ScalarInterpolatorType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ScalarType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Self typedef | anima::DTIProbabilisticTractographyImageFilter | |
| SetB0Image(ScalarImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetClusterDistance(unsigned int _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetComputeLocalColors(bool _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetCutMask(MaskImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetFAThreshold(double _arg) | anima::DTIProbabilisticTractographyImageFilter | virtual |
| SetFiberTrashThreshold(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetFilterMask(MaskImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetForbiddenMask(MaskImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetInitialColinearityDirection(const ColinearityDirectionType &colDir) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | inline |
| SetInitialDirectionMode(const InitialDirectionModeType &dir) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | inline |
| SetInputModelImage(InputModelImageType *inImage) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | inlinevirtual |
| SetKappaOfPriorDistribution(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetKappaPolynomialCoefficients(std::vector< double > &coefs) | anima::DTIProbabilisticTractographyImageFilter | |
| SetKappaSplitThreshold(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetMAPMergeFibers(bool _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetMaxLengthFiber(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetMinimalNumberOfParticlesPerClass(unsigned int _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetMinLengthFiber(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetModelDimension(unsigned int _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetNoiseImage(ScalarImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetNumberOfFibersPerPixel(unsigned int _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetNumberOfParticles(unsigned int _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetPositionDistanceFuseThreshold(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetResamplingThreshold(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetSeedMask(MaskImageType *_arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetStepProgression(double _arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | virtual |
| SetThresholdForProlateTensor(double _arg) | anima::DTIProbabilisticTractographyImageFilter | virtual |
| Superclass typedef | anima::DTIProbabilisticTractographyImageFilter | |
| ThreadedTrackComputer(unsigned int numThread, FiberProcessVectorType &resultFibers, ListType &resultWeights, unsigned int startSeedIndex, unsigned int endSeedIndex) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| ThreadTrack(unsigned int numThread, FiberProcessVectorType &resultFibers, ListType &resultWeights) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| ThreadTracker(void *arg) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedstatic |
| Top enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Update() ITK_OVERRIDE | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| UpdateClassesMemberships(FiberWorkType &fiberData, DirectionVectorType &directions, std::mt19937 &random_generator) | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protected |
| Vector3DType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| VectorType typedef | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| Weight enum value | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | |
| ~BaseProbabilisticTractographyImageFilter() | anima::BaseProbabilisticTractographyImageFilter< itk::VectorImage< double, 3 > > | protectedvirtual |
| ~DTIProbabilisticTractographyImageFilter() | anima::DTIProbabilisticTractographyImageFilter | protectedvirtual |
