BaseCompartment() | anima::BaseCompartment | inlineprotected |
BaseIsotropicCompartment() | anima::BaseIsotropicCompartment | inlineprotected |
BasePointer typedef | anima::BaseIsotropicCompartment | |
ConstPointer typedef | anima::BaseIsotropicCompartment | |
CopyFromOther(Self *rhs) | anima::BaseCompartment | virtual |
GetApparentFractionalAnisotropy() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetApparentMeanDiffusivity() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetApparentParallelDiffusivity() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetApparentPerpendicularDiffusivity() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetAxialDiffusivity() | anima::BaseCompartment | inlinevirtual |
GetCompartmentSize() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetCompartmentType()=0 | anima::BaseCompartment | pure virtual |
GetCompartmentVector() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetDiffusionTensor() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetEstimateAxialDiffusivity() | anima::BaseIsotropicCompartment | inline |
GetExtraAxonalFraction() | anima::BaseCompartment | inlinevirtual |
GetFourierTransformedDiffusionProfile(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient) ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetLogDiffusionProfile(const Vector3DType &sample) ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetNameOfClass() const | anima::BaseIsotropicCompartment | virtual |
GetNumberOfParameters() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetOrientationConcentration() | anima::BaseCompartment | inlinevirtual |
GetOrientationPhi() | anima::BaseCompartment | inlinevirtual |
GetOrientationTheta() | anima::BaseCompartment | inlinevirtual |
GetParameterLowerBounds()=0 | anima::BaseCompartment | pure virtual |
GetParametersAsVector() ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetParameterUpperBounds()=0 | anima::BaseCompartment | pure virtual |
GetPerpendicularAngle() | anima::BaseCompartment | inlinevirtual |
GetPredictedSignal(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient) | anima::BaseCompartment | |
GetRadialDiffusivity1() | anima::BaseCompartment | inlinevirtual |
GetRadialDiffusivity2() | anima::BaseCompartment | inlinevirtual |
GetSignalAttenuationJacobian(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient) ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
GetTensorCompatible() | anima::BaseCompartment | inlinevirtual |
GetTissueRadius() | anima::BaseCompartment | inlinevirtual |
IsEqual(Self *rhs, double tolerance=1.0e-2, double absoluteTolerance=1.0e-8) | anima::BaseCompartment | virtual |
ListType typedef | anima::BaseCompartment | |
m_CompartmentVector | anima::BaseCompartment | protected |
m_JacobianVector | anima::BaseCompartment | protected |
m_ParametersLowerBoundsVector | anima::BaseCompartment | protected |
m_ParametersUpperBoundsVector | anima::BaseCompartment | protected |
m_ParametersVector | anima::BaseCompartment | protected |
m_SpaceDimension | anima::BaseCompartment | protectedstatic |
Matrix3DType typedef | anima::BaseIsotropicCompartment | |
ModelOutputVectorType typedef | anima::BaseIsotropicCompartment | |
Pointer typedef | anima::BaseIsotropicCompartment | |
Reorient(vnl_matrix< double > &orientationMatrix, bool affineTransform) ITK_OVERRIDE | anima::BaseIsotropicCompartment | inlinevirtual |
Self typedef | anima::BaseIsotropicCompartment | |
SetAxialDiffusivity(double num) | anima::BaseCompartment | inlinevirtual |
SetCompartmentVector(ModelOutputVectorType &compartmentVector) ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
SetEstimateAxialDiffusivity(bool arg) | anima::BaseIsotropicCompartment | |
SetExtraAxonalFraction(double num) | anima::BaseCompartment | inlinevirtual |
SetOrientationConcentration(double num) | anima::BaseCompartment | inlinevirtual |
SetOrientationPhi(double num) | anima::BaseCompartment | inlinevirtual |
SetOrientationTheta(double num) | anima::BaseCompartment | inlinevirtual |
SetParametersFromVector(const ListType ¶ms) ITK_OVERRIDE | anima::BaseIsotropicCompartment | virtual |
SetPerpendicularAngle(double num) | anima::BaseCompartment | inlinevirtual |
SetRadialDiffusivity1(double num) | anima::BaseCompartment | inlinevirtual |
SetRadialDiffusivity2(double num) | anima::BaseCompartment | inlinevirtual |
SetTissueRadius(double num) | anima::BaseCompartment | inlinevirtual |
Superclass typedef | anima::BaseIsotropicCompartment | |
Vector3DType typedef | anima::BaseIsotropicCompartment | |
~BaseCompartment() | anima::BaseCompartment | inlineprotectedvirtual |
~BaseIsotropicCompartment() | anima::BaseIsotropicCompartment | inlineprotectedvirtual |