| BaseCompartment() | anima::BaseCompartment | inlineprotected |
| ConstPointer typedef | anima::BaseCompartment | |
| CopyFromOther(Self *rhs) | anima::BaseCompartment | virtual |
| GetApparentFractionalAnisotropy() | anima::BaseCompartment | virtual |
| GetApparentMeanDiffusivity() | anima::BaseCompartment | virtual |
| GetApparentParallelDiffusivity() | anima::BaseCompartment | virtual |
| GetApparentPerpendicularDiffusivity() | anima::BaseCompartment | virtual |
| GetAxialDiffusivity() | anima::BaseCompartment | inlinevirtual |
| GetCompartmentSize()=0 | anima::BaseCompartment | pure virtual |
| GetCompartmentType()=0 | anima::BaseCompartment | pure virtual |
| GetCompartmentVector()=0 | anima::BaseCompartment | pure virtual |
| GetDiffusionTensor() | anima::BaseCompartment | virtual |
| GetExtraAxonalFraction() | anima::BaseCompartment | inlinevirtual |
| GetFourierTransformedDiffusionProfile(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient)=0 | anima::BaseCompartment | pure virtual |
| GetLogDiffusionProfile(const Vector3DType &sample)=0 | anima::BaseCompartment | pure virtual |
| GetNameOfClass() const | anima::BaseCompartment | virtual |
| GetNumberOfParameters()=0 | anima::BaseCompartment | pure virtual |
| GetOrientationConcentration() | anima::BaseCompartment | inlinevirtual |
| GetOrientationPhi() | anima::BaseCompartment | inlinevirtual |
| GetOrientationTheta() | anima::BaseCompartment | inlinevirtual |
| GetParameterLowerBounds()=0 | anima::BaseCompartment | pure virtual |
| GetParametersAsVector()=0 | anima::BaseCompartment | pure virtual |
| GetParameterUpperBounds()=0 | anima::BaseCompartment | pure virtual |
| GetPerpendicularAngle() | anima::BaseCompartment | inlinevirtual |
| GetPredictedSignal(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient) | anima::BaseCompartment | |
| GetRadialDiffusivity1() | anima::BaseCompartment | inlinevirtual |
| GetRadialDiffusivity2() | anima::BaseCompartment | inlinevirtual |
| GetSignalAttenuationJacobian(double smallDelta, double bigDelta, double gradientStrength, const Vector3DType &gradient)=0 | anima::BaseCompartment | pure virtual |
| GetTensorCompatible() | anima::BaseCompartment | inlinevirtual |
| GetTissueRadius() | anima::BaseCompartment | inlinevirtual |
| IsEqual(Self *rhs, double tolerance=1.0e-2, double absoluteTolerance=1.0e-8) | anima::BaseCompartment | virtual |
| ListType typedef | anima::BaseCompartment | |
| m_CompartmentVector | anima::BaseCompartment | protected |
| m_DiffusionTensor | anima::BaseCompartment | protected |
| m_JacobianVector | anima::BaseCompartment | protected |
| m_ParametersLowerBoundsVector | anima::BaseCompartment | protected |
| m_ParametersUpperBoundsVector | anima::BaseCompartment | protected |
| m_ParametersVector | anima::BaseCompartment | protected |
| m_SpaceDimension | anima::BaseCompartment | protectedstatic |
| Matrix3DType typedef | anima::BaseCompartment | |
| ModelOutputVectorType typedef | anima::BaseCompartment | |
| Pointer typedef | anima::BaseCompartment | |
| Reorient(vnl_matrix< double > &orientationMatrix, bool affineTransform) | anima::BaseCompartment | virtual |
| Self typedef | anima::BaseCompartment | |
| SetAxialDiffusivity(double num) | anima::BaseCompartment | inlinevirtual |
| SetCompartmentVector(ModelOutputVectorType &compartmentVector)=0 | anima::BaseCompartment | pure virtual |
| SetExtraAxonalFraction(double num) | anima::BaseCompartment | inlinevirtual |
| SetOrientationConcentration(double num) | anima::BaseCompartment | inlinevirtual |
| SetOrientationPhi(double num) | anima::BaseCompartment | inlinevirtual |
| SetOrientationTheta(double num) | anima::BaseCompartment | inlinevirtual |
| SetParametersFromVector(const ListType ¶ms)=0 | anima::BaseCompartment | pure virtual |
| SetPerpendicularAngle(double num) | anima::BaseCompartment | inlinevirtual |
| SetRadialDiffusivity1(double num) | anima::BaseCompartment | inlinevirtual |
| SetRadialDiffusivity2(double num) | anima::BaseCompartment | inlinevirtual |
| SetTissueRadius(double num) | anima::BaseCompartment | inlinevirtual |
| Superclass typedef | anima::BaseCompartment | |
| Vector3DType typedef | anima::BaseCompartment | |
| ~BaseCompartment() | anima::BaseCompartment | inlineprotectedvirtual |
